Wall clock time and date at job start Tue Mar 31 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47345 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46865 * 300.00049 * 3 2 1 6 6 H 1.48498 * 109.47545 * 59.99770 * 3 2 1 7 7 C 1.37872 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99784 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99805 * 269.99617 * 10 9 7 12 12 C 1.53001 * 109.47472 * 270.00209 * 11 10 9 13 13 C 1.52995 * 117.49949 * 243.75048 * 12 11 10 14 14 C 1.52997 * 117.49740 * 175.08579 * 12 11 10 15 15 C 1.34775 * 120.00250 * 89.99949 * 10 9 7 16 16 O 1.21279 * 119.99843 * 0.02562 * 15 10 9 17 17 C 1.50698 * 120.00029 * 179.97438 * 15 10 9 18 18 C 1.53001 * 109.46884 * 180.02562 * 17 15 10 19 19 H 1.08991 * 109.48469 * 55.02401 * 18 17 15 20 20 C 1.53100 * 109.47994 * 175.05930 * 18 17 15 21 21 C 1.53178 * 109.16395 * 177.59164 * 20 18 17 22 22 C 1.53181 * 109.03300 * 303.01709 * 21 20 18 23 23 C 1.53096 * 109.16280 * 56.98248 * 22 21 20 24 24 O 1.42894 * 109.41507 * 302.38730 * 23 22 21 25 25 H 0.97004 * 120.00294 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46620 * 60.00108 * 9 7 2 27 27 H 1.08998 * 109.46887 * 299.99886 * 9 7 2 28 28 H 1.09005 * 109.47407 * 30.00906 * 11 10 9 29 29 H 1.09002 * 109.46948 * 150.00431 * 11 10 9 30 30 H 1.08997 * 115.54567 * 29.41579 * 12 11 10 31 31 H 1.09001 * 117.50170 * 359.97438 * 13 12 11 32 32 H 1.09003 * 117.50019 * 145.02083 * 13 12 11 33 33 H 1.09001 * 117.49639 * 214.97875 * 14 12 11 34 34 H 1.08993 * 117.50404 * 0.02562 * 14 12 11 35 35 H 1.09004 * 109.47397 * 60.00354 * 17 15 10 36 36 H 1.09000 * 109.47232 * 300.00008 * 17 15 10 37 37 H 1.08997 * 109.51667 * 297.49685 * 20 18 17 38 38 H 1.08999 * 109.52001 * 57.68272 * 20 18 17 39 39 H 1.09000 * 109.54365 * 183.15369 * 21 20 18 40 40 H 1.09003 * 109.54455 * 62.87879 * 21 20 18 41 41 H 1.08998 * 109.52547 * 297.07448 * 22 21 20 42 42 H 1.09004 * 109.52249 * 176.88328 * 22 21 20 43 43 H 1.08997 * 109.47878 * 62.37549 * 23 22 21 44 44 H 1.09005 * 109.47771 * 182.39256 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6791 -4.1705 -1.2656 12 6 1.7484 -5.3021 -1.7062 13 6 2.3397 -6.7107 -1.7905 14 6 2.0101 -5.9406 -3.0718 15 6 2.6411 -4.1237 1.1703 16 8 2.2467 -3.6622 2.2202 17 6 3.6200 -5.2695 1.1713 18 6 3.9511 -5.6561 2.6141 19 1 3.0289 -5.8726 3.1532 20 6 4.8478 -6.8970 2.6172 21 6 5.2239 -7.2420 4.0615 22 6 5.9063 -6.0300 4.7031 23 6 4.9687 -4.8226 4.6195 24 8 4.6338 -4.5751 3.2526 25 1 -0.4851 0.8401 0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8920 28 1 2.6869 -3.3895 -2.0260 29 1 3.6885 -4.5603 -1.1349 30 1 0.7112 -5.2101 -1.3840 31 1 3.3918 -6.8312 -1.5324 32 1 1.6913 -7.5455 -1.5242 33 1 1.1450 -6.2691 -3.6478 34 1 2.8454 -5.5549 -3.6560 35 1 4.5326 -4.9681 0.6570 36 1 3.1793 -6.1244 0.6584 37 1 4.3121 -7.7345 2.1703 38 1 5.7523 -6.6942 2.0438 39 1 5.9075 -8.0909 4.0674 40 1 4.3237 -7.4931 4.6227 41 1 6.8322 -5.8097 4.1719 42 1 6.1277 -6.2475 5.7481 43 1 4.0599 -5.0283 5.1850 44 1 5.4659 -3.9468 5.0365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087298436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:09 Heat of formation + Delta-G solvation = -72.687880 kcal Electronic energy + Delta-G solvation = -23042.854719 eV Core-core repulsion = 19767.461437 eV Total energy + Delta-G solvation = -3275.393282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.66343 -38.56162 -37.05328 -34.31945 -33.49641 -32.73795 -32.28018 -28.70495 -27.38565 -25.89937 -24.33425 -23.15666 -22.28666 -21.74751 -20.60364 -20.18327 -18.26016 -16.47157 -16.46357 -16.18364 -15.88641 -15.24126 -14.89930 -14.58096 -14.42667 -14.38209 -14.06017 -13.49867 -13.34099 -12.65456 -12.50144 -12.38604 -12.15201 -11.97517 -11.69494 -11.42382 -11.27748 -11.17988 -11.15047 -11.06738 -10.77838 -10.70378 -10.53696 -10.30040 -10.16881 -10.01870 -9.77637 -9.51357 -9.20474 -8.69714 -8.36649 -7.55540 -5.97224 -4.00944 3.34665 3.42055 3.46627 3.58691 3.84436 4.00270 4.09580 4.51174 4.72334 4.77003 4.83364 4.90406 4.98886 5.05694 5.16371 5.25760 5.33461 5.36800 5.46633 5.50063 5.55668 5.65880 5.69301 5.72928 5.78656 5.80128 5.87888 5.91561 5.93555 6.02546 6.06050 6.13180 6.16191 6.19985 6.31641 6.50244 7.16056 7.52282 7.55162 7.66456 8.00440 8.32575 8.54879 9.00183 9.25569 9.64166 11.10890 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.005734 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.993670 B = 4882.321692 C = 6649.907765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.599 5.599 11 C 0.143 3.857 12 C -0.164 4.164 13 C -0.187 4.187 14 C -0.177 4.177 15 C 0.510 3.490 16 O -0.530 6.530 17 C -0.136 4.136 18 C 0.108 3.892 19 H 0.063 0.937 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.157 4.157 23 C 0.062 3.938 24 O -0.361 6.361 25 H 0.261 0.739 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 -16.835 0.845 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.331 5.331 11 C 0.018 3.982 12 C -0.183 4.183 13 C -0.224 4.224 14 C -0.214 4.214 15 C 0.296 3.704 16 O -0.407 6.407 17 C -0.176 4.176 18 C 0.050 3.950 19 H 0.081 0.919 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.015 4.015 24 O -0.279 6.279 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.019 -16.261 1.315 18.641 hybrid contribution 0.390 0.648 -0.004 0.757 sum 9.409 -15.612 1.311 18.276 Atomic orbital electron populations 1.69947 1.05969 1.26737 1.50954 1.24924 0.94849 0.99151 0.95222 0.86467 0.80093 0.83527 0.77485 1.19796 1.21064 1.20937 1.21498 0.93409 0.90716 1.50357 0.92437 1.19241 0.87532 0.82272 0.98199 1.48167 1.46029 1.34951 1.03920 1.20987 0.94996 0.94526 0.87672 1.22967 1.01508 0.93835 1.00029 1.23065 1.01420 0.95347 1.02576 1.22902 1.03339 1.04444 0.90750 1.20150 0.82165 0.83908 0.84136 1.90669 1.57800 1.61291 1.30898 1.21814 1.00258 0.99012 0.96540 1.21756 0.94220 0.86163 0.92906 0.91905 1.22247 1.00893 0.98463 0.97270 1.21568 1.00572 0.97709 0.96003 1.22226 0.99869 0.96283 1.01077 1.22483 0.97309 0.97518 0.84174 1.88053 1.76800 1.39293 1.23778 0.92903 0.95131 0.94015 0.89629 0.91528 0.87424 0.88898 0.89219 0.89049 0.88767 0.89016 0.88212 0.90989 0.91112 0.91766 0.91862 0.91256 0.91277 0.93350 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 10 N -0.60 -12.92 2.46 -175.06 -0.43 -13.35 16 11 C 0.14 2.36 5.49 -4.04 -0.02 2.33 16 12 C -0.16 -2.29 5.95 -90.62 -0.54 -2.83 16 13 C -0.19 -2.02 9.17 -26.69 -0.24 -2.27 16 14 C -0.18 -1.97 10.26 -26.69 -0.27 -2.25 16 15 C 0.51 10.97 7.55 -10.99 -0.08 10.88 16 16 O -0.53 -13.86 15.00 -8.84 -0.13 -13.99 16 17 C -0.14 -2.11 3.97 -27.88 -0.11 -2.22 16 18 C 0.11 1.63 2.19 -26.68 -0.06 1.57 16 19 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 20 C -0.15 -1.65 5.42 -26.59 -0.14 -1.80 16 21 C -0.12 -1.19 6.03 -26.55 -0.16 -1.35 16 22 C -0.16 -1.64 6.14 -26.59 -0.16 -1.80 16 23 C 0.06 0.85 6.84 37.21 0.25 1.10 16 24 O -0.36 -6.34 9.64 -49.63 -0.48 -6.82 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 28 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 29 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 30 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 31 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.33 7.40 -51.93 -0.38 0.95 16 36 H 0.10 1.27 6.83 -51.93 -0.35 0.91 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -34.15 353.86 -9.71 -43.85 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.72 Total: -0.13 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.99 Total: -5.89 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.31 Total: -39.77 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.61 Total: -20.81 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.15 -9.71 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.833 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds