Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47345 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46865 * 300.00049 * 3 2 1 6 6 H 1.48498 * 109.47545 * 59.99770 * 3 2 1 7 7 C 1.37872 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99784 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99805 * 269.99617 * 10 9 7 12 12 C 1.53001 * 109.47472 * 270.00209 * 11 10 9 13 13 C 1.52995 * 117.49949 * 243.75048 * 12 11 10 14 14 C 1.52997 * 117.49740 * 175.08579 * 12 11 10 15 15 C 1.34775 * 120.00250 * 89.99949 * 10 9 7 16 16 O 1.21279 * 119.99843 * 0.02562 * 15 10 9 17 17 C 1.50698 * 120.00029 * 179.97438 * 15 10 9 18 18 C 1.53001 * 109.46884 * 180.02562 * 17 15 10 19 19 H 1.08991 * 109.48469 * 55.02401 * 18 17 15 20 20 C 1.53100 * 109.47994 * 175.05930 * 18 17 15 21 21 C 1.53178 * 109.16395 * 177.59164 * 20 18 17 22 22 C 1.53181 * 109.03300 * 303.01709 * 21 20 18 23 23 C 1.53096 * 109.16280 * 56.98248 * 22 21 20 24 24 O 1.42894 * 109.41507 * 302.38730 * 23 22 21 25 25 H 0.97004 * 120.00294 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46620 * 60.00108 * 9 7 2 27 27 H 1.08998 * 109.46887 * 299.99886 * 9 7 2 28 28 H 1.09005 * 109.47407 * 30.00906 * 11 10 9 29 29 H 1.09002 * 109.46948 * 150.00431 * 11 10 9 30 30 H 1.08997 * 115.54567 * 29.41579 * 12 11 10 31 31 H 1.09001 * 117.50170 * 359.97438 * 13 12 11 32 32 H 1.09003 * 117.50019 * 145.02083 * 13 12 11 33 33 H 1.09001 * 117.49639 * 214.97875 * 14 12 11 34 34 H 1.08993 * 117.50404 * 0.02562 * 14 12 11 35 35 H 1.09004 * 109.47397 * 60.00354 * 17 15 10 36 36 H 1.09000 * 109.47232 * 300.00008 * 17 15 10 37 37 H 1.08997 * 109.51667 * 297.49685 * 20 18 17 38 38 H 1.08999 * 109.52001 * 57.68272 * 20 18 17 39 39 H 1.09000 * 109.54365 * 183.15369 * 21 20 18 40 40 H 1.09003 * 109.54455 * 62.87879 * 21 20 18 41 41 H 1.08998 * 109.52547 * 297.07448 * 22 21 20 42 42 H 1.09004 * 109.52249 * 176.88328 * 22 21 20 43 43 H 1.08997 * 109.47878 * 62.37549 * 23 22 21 44 44 H 1.09005 * 109.47771 * 182.39256 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6791 -4.1705 -1.2656 12 6 1.7484 -5.3021 -1.7062 13 6 2.3397 -6.7107 -1.7905 14 6 2.0101 -5.9406 -3.0718 15 6 2.6411 -4.1237 1.1703 16 8 2.2467 -3.6622 2.2202 17 6 3.6200 -5.2695 1.1713 18 6 3.9511 -5.6561 2.6141 19 1 3.0289 -5.8726 3.1532 20 6 4.8478 -6.8970 2.6172 21 6 5.2239 -7.2420 4.0615 22 6 5.9063 -6.0300 4.7031 23 6 4.9687 -4.8226 4.6195 24 8 4.6338 -4.5751 3.2526 25 1 -0.4851 0.8401 0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6248 -2.5563 0.8920 28 1 2.6869 -3.3895 -2.0260 29 1 3.6885 -4.5603 -1.1349 30 1 0.7112 -5.2101 -1.3840 31 1 3.3918 -6.8312 -1.5324 32 1 1.6913 -7.5455 -1.5242 33 1 1.1450 -6.2691 -3.6478 34 1 2.8454 -5.5549 -3.6560 35 1 4.5326 -4.9681 0.6570 36 1 3.1793 -6.1244 0.6584 37 1 4.3121 -7.7345 2.1703 38 1 5.7523 -6.6942 2.0438 39 1 5.9075 -8.0909 4.0674 40 1 4.3237 -7.4931 4.6227 41 1 6.8322 -5.8097 4.1719 42 1 6.1277 -6.2475 5.7481 43 1 4.0599 -5.0283 5.1850 44 1 5.4659 -3.9468 5.0365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087298436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -93.292609 kcal Electronic energy + Delta-G solvation = -23043.748207 eV Core-core repulsion = 19767.461437 eV Total energy + Delta-G solvation = -3276.286770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05935 -39.86027 -38.28016 -36.09597 -34.61906 -34.45582 -33.72211 -30.31435 -28.87360 -27.47555 -25.58951 -24.71357 -23.24917 -23.05495 -21.78055 -21.12052 -19.86204 -18.60899 -17.94264 -17.45440 -17.27600 -16.70965 -16.31322 -15.93116 -15.84689 -15.39144 -15.28337 -14.77279 -14.58005 -14.38528 -13.91474 -13.65599 -13.47205 -13.35285 -13.16877 -12.99042 -12.72583 -12.56540 -12.51350 -12.24777 -12.21611 -12.11752 -11.92053 -11.69466 -11.58932 -11.21787 -11.21358 -10.85206 -10.65273 -10.47562 -10.23204 -9.39256 -8.22535 -6.37224 1.34115 1.37023 1.49169 1.93034 2.30174 2.45070 2.91718 3.00004 3.06388 3.63725 3.80100 3.93610 3.98270 4.01312 4.07840 4.14255 4.18653 4.25713 4.35598 4.39853 4.51052 4.61322 4.70883 4.77658 4.80635 4.87081 4.89812 4.93990 5.01348 5.04001 5.10659 5.12988 5.15947 5.21063 5.24713 5.36102 5.36968 5.43731 5.57998 5.88266 6.07715 6.43212 6.70993 6.85649 7.29291 7.57324 8.84640 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.005734 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.993670 B = 4882.321692 C = 6649.907765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.264 3.736 10 N -0.604 5.604 11 C 0.142 3.858 12 C -0.195 4.195 13 C -0.162 4.162 14 C -0.163 4.163 15 C 0.497 3.503 16 O -0.590 6.590 17 C -0.120 4.120 18 C 0.102 3.898 19 H 0.039 0.961 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.148 4.148 23 C 0.052 3.948 24 O -0.401 6.401 25 H 0.267 0.733 26 H 0.019 0.981 27 H -0.007 1.007 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.037 0.963 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 -18.992 -0.274 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.143 3.857 10 N -0.334 5.334 11 C 0.020 3.980 12 C -0.215 4.215 13 C -0.199 4.199 14 C -0.201 4.201 15 C 0.286 3.714 16 O -0.471 6.471 17 C -0.159 4.159 18 C 0.044 3.956 19 H 0.057 0.943 20 C -0.178 4.178 21 C -0.159 4.159 22 C -0.186 4.186 23 C -0.024 4.024 24 O -0.320 6.320 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.011 0.989 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.737 -18.460 0.155 21.876 hybrid contribution -0.525 1.328 0.351 1.470 sum 11.212 -17.132 0.506 20.481 Atomic orbital electron populations 1.70064 1.07552 1.28025 1.51296 1.25861 0.95812 1.03047 0.94460 0.85369 0.78718 0.78675 0.78052 1.19277 1.19132 1.20721 1.21731 0.93118 0.92102 1.50864 0.93198 1.18643 0.87986 0.83929 0.95155 1.48181 1.45048 1.33827 1.06374 1.21212 0.97154 0.94908 0.84747 1.22648 0.99730 0.95460 1.03643 1.23227 1.02657 0.93025 1.00986 1.23020 1.04007 1.02985 0.90062 1.21317 0.82279 0.84822 0.82935 1.90631 1.60026 1.63468 1.32975 1.21844 0.98939 0.97226 0.97938 1.21896 0.94317 0.87542 0.91845 0.94340 1.22191 1.00463 0.96691 0.98503 1.21620 1.01064 0.98100 0.95135 1.22162 0.98918 0.94902 1.02610 1.22671 0.97779 0.99403 0.82570 1.87982 1.77177 1.41360 1.25518 0.92438 0.96286 0.98907 0.91250 0.88218 0.90344 0.86540 0.88010 0.88311 0.87411 0.87127 0.84736 0.88519 0.90066 0.89035 0.92090 0.90884 0.89269 0.94430 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 46.81 29.54 68.60 2.03 48.84 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.54 -32.74 9.39 25.60 0.24 -32.50 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 9 C 0.26 15.08 5.16 85.64 0.44 15.52 16 10 N -0.60 -27.09 2.46 -826.15 -2.03 -29.12 16 11 C 0.14 4.64 5.49 86.38 0.47 5.12 16 12 C -0.20 -5.27 5.95 -10.80 -0.06 -5.33 16 13 C -0.16 -2.89 9.17 30.62 0.28 -2.61 16 14 C -0.16 -3.19 10.26 30.62 0.31 -2.88 16 15 C 0.50 22.10 7.55 87.66 0.66 22.76 16 16 O -0.59 -32.91 15.00 10.74 0.16 -32.75 16 17 C -0.12 -3.55 3.97 29.85 0.12 -3.43 16 18 C 0.10 2.99 2.19 30.63 0.07 3.06 16 19 H 0.04 1.29 7.95 -2.39 -0.02 1.27 16 20 C -0.14 -2.61 5.42 30.69 0.17 -2.44 16 21 C -0.12 -2.02 6.03 30.71 0.19 -1.83 16 22 C -0.15 -2.79 6.14 30.69 0.19 -2.60 16 23 C 0.05 1.44 6.84 72.01 0.49 1.93 16 24 O -0.40 -14.27 9.64 -135.21 -1.30 -15.58 16 25 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 27 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 28 H 0.07 2.44 8.07 -2.38 -0.02 2.43 16 29 H 0.10 2.54 6.17 -2.39 -0.01 2.53 16 30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.12 1.57 7.87 -2.39 -0.02 1.55 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 2.88 7.40 -2.39 -0.02 2.87 16 36 H 0.13 2.97 6.83 -2.39 -0.02 2.95 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -80.62 353.86 4.12 -76.50 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.95 Total: 14.43 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 4.03 Total: -4.34 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.74 Total: -87.09 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.14 Total: -48.33 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -80.62 4.12 -76.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.797 kcal (2) G-P(sol) polarization free energy of solvation -80.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds