Wall clock time and date at job start Tue Mar 31 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47305 * 300.00057 * 3 2 1 6 6 H 1.48503 * 109.46961 * 60.00123 * 3 2 1 7 7 C 1.38957 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99679 * 202.21847 * 7 2 1 9 9 N 1.37092 * 119.99969 * 21.93955 * 7 2 1 10 10 C 1.34773 * 120.00088 * 52.54931 * 9 7 2 11 11 O 1.21293 * 120.00379 * 179.97438 * 10 9 7 12 12 C 1.50699 * 120.00032 * 0.02562 * 10 9 7 13 13 C 1.53007 * 109.47182 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47647 * 304.99786 * 13 12 10 15 15 C 1.53093 * 109.47807 * 184.97652 * 13 12 10 16 16 C 1.53186 * 109.16078 * 182.40719 * 15 13 12 17 17 C 1.53181 * 109.03532 * 56.97885 * 16 15 13 18 18 C 1.53096 * 109.16282 * 303.01932 * 17 16 15 19 19 O 1.42900 * 109.42331 * 57.60651 * 18 17 16 20 20 C 1.46498 * 119.99962 * 232.55038 * 9 7 2 21 21 C 1.54271 * 110.03322 * 56.24747 * 20 9 7 22 22 C 1.54885 * 104.19658 * 217.10504 * 21 20 9 23 23 C 1.54889 * 102.74732 * 37.93971 * 22 21 20 24 24 C 1.53878 * 110.03408 * 299.08002 * 20 9 7 25 25 H 0.96995 * 119.99993 * 354.83960 * 1 2 3 26 26 H 1.08999 * 109.46901 * 299.99203 * 12 10 9 27 27 H 1.08997 * 109.47570 * 60.00087 * 12 10 9 28 28 H 1.09001 * 109.52323 * 302.30617 * 15 13 12 29 29 H 1.08998 * 109.52670 * 62.44090 * 15 13 12 30 30 H 1.09000 * 109.53874 * 176.84611 * 16 15 13 31 31 H 1.08996 * 109.53995 * 297.11295 * 16 15 13 32 32 H 1.09003 * 109.52184 * 62.92631 * 17 16 15 33 33 H 1.08997 * 109.51952 * 183.05069 * 17 16 15 34 34 H 1.08995 * 109.47766 * 177.59140 * 18 17 16 35 35 H 1.09004 * 109.47785 * 297.61632 * 18 17 16 36 36 H 1.09007 * 110.01709 * 177.68919 * 20 9 7 37 37 H 1.08996 * 110.48309 * 335.78929 * 21 20 9 38 38 H 1.09004 * 110.48394 * 98.42845 * 21 20 9 39 39 H 1.09008 * 110.75630 * 279.62507 * 22 21 20 40 40 H 1.09000 * 110.91670 * 156.32845 * 22 21 20 41 41 H 1.09001 * 110.48677 * 203.37269 * 23 22 21 42 42 H 1.09004 * 110.59628 * 80.79506 * 23 22 21 43 43 H 1.08999 * 110.03297 * 238.56831 * 24 20 9 44 44 H 1.08997 * 110.02781 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0287 -1.2382 0.3531 9 7 1.3979 -2.3475 -0.4446 10 6 0.8050 -2.3686 -1.6548 11 8 0.2647 -3.3809 -2.0479 12 6 0.8141 -1.1347 -2.5200 13 6 0.0799 -1.4253 -3.8305 14 1 0.5252 -2.2964 -4.3112 15 6 0.1958 -0.2143 -4.7600 16 6 -0.5918 -0.4894 -6.0447 17 6 -2.0457 -0.8063 -5.6813 18 6 -2.0749 -1.9945 -4.7162 19 8 -1.2986 -1.6845 -3.5572 20 6 1.3894 -3.5471 0.3962 21 6 0.7625 -3.2260 1.7687 22 6 1.5958 -4.0616 2.7718 23 6 3.0303 -3.9537 2.1977 24 6 2.8314 -4.0098 0.6690 25 1 -0.4850 0.8366 0.0756 26 1 0.3143 -0.3200 -1.9961 27 1 1.8438 -0.8502 -2.7363 28 1 -0.2127 0.6661 -4.2638 29 1 1.2439 -0.0415 -5.0042 30 1 -0.5600 0.3905 -6.6872 31 1 -0.1527 -1.3397 -6.5665 32 1 -2.4994 0.0622 -5.2037 33 1 -2.6009 -1.0564 -6.5853 34 1 -3.1042 -2.1974 -4.4206 35 1 -1.6582 -2.8731 -5.2087 36 1 0.8285 -4.3427 -0.0944 37 1 0.8532 -2.1626 1.9901 38 1 -0.2830 -3.5337 1.7919 39 1 1.2610 -5.0990 2.7823 40 1 1.5466 -3.6313 3.7721 41 1 3.6400 -4.7922 2.5342 42 1 3.4895 -3.0087 2.4883 43 1 2.9700 -5.0301 0.3117 44 1 3.5374 -3.3420 0.1754 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087317136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:21 Heat of formation + Delta-G solvation = -99.028178 kcal Electronic energy + Delta-G solvation = -23865.087401 eV Core-core repulsion = 20588.551918 eV Total energy + Delta-G solvation = -3276.535483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.20237 -38.37848 -36.45314 -34.02380 -33.11124 -32.05597 -31.22978 -27.93390 -27.88432 -26.53139 -24.63612 -23.82536 -22.06908 -19.95200 -19.83750 -19.29385 -19.21364 -16.34288 -15.84292 -15.71677 -15.29854 -15.06842 -14.56060 -14.34765 -14.09428 -14.02756 -13.54602 -13.23085 -12.80653 -12.57201 -12.26429 -12.02877 -11.83708 -11.59429 -11.25477 -11.10302 -10.90660 -10.86488 -10.74344 -10.53104 -10.46439 -10.41237 -10.30567 -10.27302 -10.24856 -9.93513 -9.74639 -9.55663 -8.77741 -8.63880 -8.07531 -7.14986 -6.33600 -4.11926 3.10945 3.22546 3.25159 4.08636 4.30675 4.49795 4.84479 4.91809 5.09210 5.17297 5.19135 5.42229 5.44435 5.45475 5.63401 5.67243 5.80693 5.88870 6.04780 6.12380 6.14384 6.15950 6.20124 6.27471 6.30715 6.38365 6.39913 6.44152 6.47984 6.56445 6.60622 6.62287 6.74008 6.80145 6.83347 6.99857 7.19502 7.30188 7.39076 7.54561 8.03536 8.12116 8.75122 9.00985 9.75593 10.19693 10.69451 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.006476 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.685866 B = 4322.575080 C = 5349.319633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.051 3.949 3 Si 0.898 3.102 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.452 5.452 10 C 0.519 3.481 11 O -0.605 6.605 12 C -0.130 4.130 13 C 0.110 3.890 14 H 0.051 0.949 15 C -0.152 4.152 16 C -0.119 4.119 17 C -0.156 4.156 18 C 0.062 3.938 19 O -0.353 6.353 20 C 0.133 3.867 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.127 4.127 25 H 0.270 0.730 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 -0.405 -4.603 4.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.156 4.156 3 Si 0.724 3.276 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.173 5.173 10 C 0.310 3.690 11 O -0.490 6.490 12 C -0.169 4.169 13 C 0.052 3.948 14 H 0.069 0.931 15 C -0.190 4.190 16 C -0.157 4.157 17 C -0.194 4.194 18 C -0.016 4.016 19 O -0.271 6.271 20 C 0.029 3.971 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.900 -0.776 -4.651 4.800 hybrid contribution 0.415 1.072 -0.133 1.157 sum 1.315 0.296 -4.783 4.969 Atomic orbital electron populations 1.69997 1.06037 1.27873 1.44188 1.25577 0.95004 0.99785 0.95280 0.86335 0.80479 0.82607 0.78204 1.19057 1.20222 1.20724 1.19121 0.96677 0.84200 1.46274 0.90176 1.43414 1.51401 1.09845 1.12606 1.20130 0.78915 0.88201 0.81784 1.90486 1.49215 1.34948 1.74349 1.21836 1.00316 1.00867 0.93923 1.21847 0.82838 0.94683 0.95460 0.93127 1.22255 1.00412 1.00116 0.96230 1.21562 0.95518 1.01143 0.97448 1.22212 0.97079 1.00323 0.99736 1.22420 0.96295 0.95207 0.87683 1.88130 1.19685 1.89858 1.29431 1.21522 0.94106 0.89977 0.91482 1.22566 0.97412 1.01856 0.93955 1.22444 0.95886 0.99372 0.98403 1.22252 0.96601 1.00631 0.95887 1.22417 0.98624 0.99940 0.95590 0.91930 0.85760 0.89815 0.91211 0.91292 0.92130 0.92161 0.91349 0.91711 0.89778 0.93929 0.90597 0.89154 0.93190 0.92634 0.92515 0.93100 0.91756 0.93100 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.07 11.41 55.50 0.63 -21.44 16 2 C 0.05 1.23 3.51 -17.47 -0.06 1.17 16 3 Si 0.90 18.85 29.61 -169.99 -5.03 13.81 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.33 -8.23 6.88 -14.93 -0.10 -8.33 16 8 H 0.08 1.94 7.33 -52.49 -0.38 1.55 16 9 N -0.45 -11.31 2.35 -106.54 -0.25 -11.56 16 10 C 0.52 13.58 7.04 -10.99 -0.08 13.50 16 11 O -0.60 -17.08 14.77 -8.83 -0.13 -17.22 16 12 C -0.13 -3.02 3.80 -27.88 -0.11 -3.12 16 13 C 0.11 2.27 2.19 -26.68 -0.06 2.21 16 14 H 0.05 1.07 7.95 -51.93 -0.41 0.65 16 15 C -0.15 -2.52 5.42 -26.59 -0.14 -2.66 16 16 C -0.12 -1.65 6.03 -26.54 -0.16 -1.81 16 17 C -0.16 -2.17 6.14 -26.59 -0.16 -2.34 16 18 C 0.06 1.04 6.84 37.21 0.25 1.30 16 19 O -0.35 -7.83 9.64 -49.61 -0.48 -8.31 16 20 C 0.13 3.02 3.29 -66.81 -0.22 2.80 16 21 C -0.12 -2.53 6.41 -25.07 -0.16 -2.69 16 22 C -0.12 -2.08 6.91 -24.74 -0.17 -2.25 16 23 C -0.12 -1.93 6.83 -25.08 -0.17 -2.10 16 24 C -0.13 -2.43 6.27 -25.61 -0.16 -2.59 16 25 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 26 H 0.12 3.12 4.90 -51.93 -0.25 2.86 16 27 H 0.08 1.80 8.10 -51.93 -0.42 1.38 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.84 6.95 -51.92 -0.36 1.48 16 37 H 0.09 2.14 6.97 -51.93 -0.36 1.78 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.40 7.04 -51.93 -0.37 1.03 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -29.07 338.19 -9.28 -38.35 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.61 Total: 8.17 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.50 Total: -6.91 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.38 Total: -33.00 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.61 Total: -25.52 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.07 -9.28 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087317136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.681 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds