Wall clock time and date at job start Tue Mar 31 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46988 * 299.99748 * 3 2 1 6 6 H 1.48496 * 109.47622 * 59.99805 * 3 2 1 7 7 C 1.38949 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00105 * 199.40230 * 7 2 1 9 9 N 1.37098 * 120.00142 * 19.41148 * 7 2 1 10 10 C 1.34779 * 120.00528 * 42.43756 * 9 7 2 11 11 O 1.21293 * 119.99366 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00109 * 180.02562 * 10 9 7 13 13 C 1.53006 * 109.46786 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47666 * 55.00366 * 13 12 10 15 15 C 1.53095 * 109.47886 * 175.02538 * 13 12 10 16 16 C 1.53177 * 109.16369 * 177.60429 * 15 13 12 17 17 C 1.53176 * 109.03574 * 303.02072 * 16 15 13 18 18 C 1.53090 * 109.16335 * 56.97581 * 17 16 15 19 19 O 1.42899 * 109.48345 * 294.97670 * 13 12 10 20 20 C 1.46500 * 119.99823 * 222.44308 * 9 7 2 21 21 C 1.54266 * 110.03275 * 54.32022 * 20 9 7 22 22 C 1.54889 * 104.19640 * 217.10402 * 21 20 9 23 23 C 1.54895 * 102.74792 * 37.94680 * 22 21 20 24 24 C 1.53880 * 110.03225 * 297.15731 * 20 9 7 25 25 H 0.96996 * 120.00091 * 354.87421 * 1 2 3 26 26 H 1.09001 * 109.47132 * 60.00750 * 12 10 9 27 27 H 1.08999 * 109.47322 * 300.00117 * 12 10 9 28 28 H 1.09006 * 109.51933 * 297.51220 * 15 13 12 29 29 H 1.08997 * 109.52076 * 57.69557 * 15 13 12 30 30 H 1.08998 * 109.54256 * 62.88379 * 16 15 13 31 31 H 1.09000 * 109.54234 * 183.14964 * 16 15 13 32 32 H 1.08999 * 109.52198 * 176.88481 * 17 16 15 33 33 H 1.09006 * 109.52081 * 297.07191 * 17 16 15 34 34 H 1.08997 * 109.47817 * 62.38140 * 18 17 16 35 35 H 1.09002 * 109.47717 * 182.39485 * 18 17 16 36 36 H 1.08996 * 110.02011 * 175.76181 * 20 9 7 37 37 H 1.08993 * 110.48845 * 335.78634 * 21 20 9 38 38 H 1.09003 * 110.48669 * 98.43155 * 21 20 9 39 39 H 1.08996 * 110.76013 * 279.62794 * 22 21 20 40 40 H 1.09001 * 110.75447 * 156.25744 * 22 21 20 41 41 H 1.09000 * 110.48449 * 203.37605 * 23 22 21 42 42 H 1.08997 * 110.48973 * 80.73511 * 23 22 21 43 43 H 1.08998 * 110.03074 * 238.56876 * 24 20 9 44 44 H 1.08998 * 110.02826 * 359.94922 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3963 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0429 -1.2298 0.3113 9 7 1.3818 -2.3571 -0.3935 10 6 0.5754 -2.3509 -1.4735 11 8 0.4049 -1.3245 -2.0970 12 6 -0.1142 -3.6190 -1.9062 13 6 -0.9625 -3.3397 -3.1486 14 1 -0.3365 -2.8989 -3.9245 15 6 -1.5640 -4.6508 -3.6614 16 6 -2.4593 -4.3550 -4.8685 17 6 -3.5340 -3.3439 -4.4577 18 6 -2.8564 -2.0833 -3.9141 19 8 -2.0150 -2.4332 -2.8132 20 6 1.5881 -3.5968 0.3593 21 6 1.2592 -3.3710 1.8495 22 6 2.3115 -4.2211 2.6038 23 6 3.5869 -4.0256 1.7469 24 6 3.0681 -4.0129 0.2941 25 1 -0.4850 0.8366 0.0750 26 1 -0.7557 -3.9767 -1.1008 27 1 0.6330 -4.3774 -2.1399 28 1 -0.7627 -5.3272 -3.9591 29 1 -2.1573 -5.1125 -2.8722 30 1 -1.8569 -3.9390 -5.6760 31 1 -2.9349 -5.2766 -5.2042 32 1 -4.1417 -3.0856 -5.3249 33 1 -4.1672 -3.7793 -3.6846 34 1 -2.2554 -1.6261 -4.7000 35 1 -3.6167 -1.3770 -3.5806 36 1 0.9592 -4.3890 -0.0467 37 1 1.3637 -2.3173 2.1079 38 1 0.2523 -3.7221 2.0754 39 1 2.0173 -5.2704 2.6249 40 1 2.4629 -3.8410 3.6141 41 1 4.2786 -4.8543 1.8978 42 1 4.0673 -3.0775 1.9887 43 1 3.1574 -5.0075 -0.1428 44 1 3.6326 -3.2930 -0.2984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087317138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:37 Heat of formation + Delta-G solvation = -89.229653 kcal Electronic energy + Delta-G solvation = -23776.916866 eV Core-core repulsion = 20500.806279 eV Total energy + Delta-G solvation = -3276.110587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.23038 -38.36449 -36.46812 -33.29804 -33.12687 -32.21920 -31.22277 -27.98710 -27.88580 -26.72281 -24.69672 -23.73542 -22.02477 -20.04151 -19.93303 -19.69066 -18.82066 -16.21124 -15.91925 -15.80070 -15.53555 -14.83404 -14.56181 -14.25928 -14.12927 -13.93955 -13.46150 -13.22193 -13.00921 -12.65728 -12.32451 -11.89099 -11.83161 -11.61044 -11.17331 -10.98785 -10.90083 -10.80893 -10.69393 -10.56070 -10.52983 -10.46716 -10.37791 -10.27706 -10.07379 -9.99480 -9.85239 -9.62862 -8.85653 -8.57146 -7.77622 -6.86924 -5.91803 -3.64162 3.38326 3.48154 3.50177 4.28822 4.38350 4.61469 4.86919 4.99618 5.07276 5.13242 5.25991 5.31086 5.32519 5.50564 5.56536 5.58952 5.66519 5.77005 5.89554 5.96941 6.01074 6.02009 6.03997 6.14604 6.15955 6.18107 6.20703 6.29027 6.30805 6.37616 6.39322 6.45468 6.51437 6.58821 6.66994 6.70157 6.88604 7.05417 7.31399 7.80395 7.91333 8.46939 9.26859 9.41126 9.89372 10.55368 11.16485 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.006606 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.318300 B = 4237.417147 C = 5612.608821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.343 4.343 8 H 0.074 0.926 9 N -0.454 5.454 10 C 0.479 3.521 11 O -0.524 6.524 12 C -0.130 4.130 13 C 0.113 3.887 14 H 0.058 0.942 15 C -0.152 4.152 16 C -0.120 4.120 17 C -0.156 4.156 18 C 0.063 3.937 19 O -0.350 6.350 20 C 0.130 3.870 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.132 4.132 25 H 0.260 0.740 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -10.906 -3.212 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.470 4.470 8 H 0.092 0.908 9 N -0.177 5.177 10 C 0.266 3.734 11 O -0.400 6.400 12 C -0.171 4.171 13 C 0.054 3.946 14 H 0.076 0.924 15 C -0.190 4.190 16 C -0.157 4.157 17 C -0.194 4.194 18 C -0.015 4.015 19 O -0.268 6.268 20 C 0.025 3.975 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.171 4.171 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.078 -10.164 -3.433 10.927 hybrid contribution 0.279 0.596 -0.161 0.677 sum -1.799 -9.568 -3.594 10.378 Atomic orbital electron populations 1.69868 1.06283 1.26786 1.42706 1.25175 0.94674 0.98986 0.94954 0.86310 0.79864 0.83532 0.77247 1.19816 1.20970 1.21508 1.18762 0.94856 0.84201 1.49136 0.90788 1.43398 1.44449 1.06987 1.22835 1.19681 0.83017 0.88828 0.81880 1.90522 1.61759 1.33169 1.54570 1.21698 0.98508 0.99209 0.97691 1.21699 0.88344 0.87943 0.96566 0.92374 1.22280 0.99733 0.98799 0.98197 1.21558 0.97346 0.98960 0.97873 1.22227 0.98436 0.97651 1.01080 1.22429 0.93561 0.95103 0.90368 1.88148 1.42088 1.64135 1.32423 1.21654 0.94380 0.88879 0.92596 1.22630 0.96822 1.02115 0.94699 1.22449 0.96175 0.99138 0.98339 1.22256 0.96960 1.00755 0.95501 1.22498 0.97722 1.00145 0.96699 0.93002 0.90251 0.90017 0.91284 0.91327 0.92031 0.92052 0.91578 0.91387 0.93736 0.89575 0.91721 0.88977 0.93081 0.92591 0.92425 0.93015 0.91681 0.93077 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.92 11.65 55.50 0.65 -24.27 16 2 C 0.07 2.08 4.34 -17.47 -0.08 2.00 16 3 Si 0.90 22.45 29.60 -169.99 -5.03 17.41 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.34 -9.35 7.29 -14.93 -0.11 -9.45 16 8 H 0.07 1.98 7.41 -52.48 -0.39 1.59 16 9 N -0.45 -11.28 2.44 -106.54 -0.26 -11.54 16 10 C 0.48 12.31 6.85 -10.99 -0.08 12.23 16 11 O -0.52 -15.69 13.05 -8.85 -0.12 -15.80 16 12 C -0.13 -2.59 3.73 -27.88 -0.10 -2.69 16 13 C 0.11 2.11 2.19 -26.68 -0.06 2.06 16 14 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 15 C -0.15 -2.13 5.42 -26.59 -0.14 -2.28 16 16 C -0.12 -1.48 6.03 -26.55 -0.16 -1.64 16 17 C -0.16 -2.02 6.14 -26.59 -0.16 -2.18 16 18 C 0.06 1.04 6.84 37.20 0.25 1.30 16 19 O -0.35 -7.44 9.64 -49.63 -0.48 -7.92 16 20 C 0.13 2.59 3.20 -66.81 -0.21 2.37 16 21 C -0.12 -2.38 6.40 -25.07 -0.16 -2.54 16 22 C -0.12 -1.88 6.91 -24.74 -0.17 -2.05 16 23 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.29 6.23 -25.61 -0.16 -2.45 16 25 H 0.26 7.62 8.32 -40.82 -0.34 7.28 16 26 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 27 H 0.08 1.37 7.87 -51.93 -0.41 0.96 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.17 5.84 -51.93 -0.30 0.87 16 37 H 0.09 2.09 6.89 -51.93 -0.36 1.73 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.43 7.21 -51.93 -0.37 1.06 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -33.29 339.30 -9.34 -42.63 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.70 Total: 1.69 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.51 Total: -7.30 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.39 Total: -35.81 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.59 Total: -23.72 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.29 -9.34 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087317138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.602 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds