Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48497 * 109.47513 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47062 * 300.00569 * 3 2 1 6 6 H 1.48508 * 109.46731 * 60.00217 * 3 2 1 7 7 C 1.37882 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99697 * 156.27715 * 7 2 1 9 9 C 1.50696 * 120.00069 * 336.27930 * 7 2 1 10 10 C 1.52999 * 115.54984 * 322.89866 * 9 7 2 11 11 N 1.46897 * 109.47275 * 291.91843 * 10 9 7 12 12 C 1.46854 * 110.99982 * 73.12957 * 11 10 9 13 13 C 1.53037 * 109.52269 * 185.84081 * 12 11 10 14 14 C 1.53203 * 109.29650 * 300.82122 * 13 12 11 15 15 C 1.53119 * 109.11781 * 57.63316 * 14 13 12 16 16 H 1.08995 * 109.50558 * 62.32384 * 15 14 13 17 17 C 1.53002 * 109.50367 * 182.39928 * 15 14 13 18 18 C 1.53000 * 109.47301 * 294.92217 * 17 15 14 19 19 C 1.50701 * 109.47142 * 179.97438 * 18 17 15 20 20 O 1.20822 * 120.00286 * 359.97438 * 19 18 17 21 21 O 1.34234 * 119.99918 * 179.97438 * 19 18 17 22 22 C 1.46849 * 111.00246 * 197.33826 * 11 10 9 23 23 C 1.52993 * 117.49825 * 108.56608 * 9 7 2 24 24 C 1.52997 * 117.49677 * 177.22885 * 9 7 2 25 25 H 0.96997 * 119.99754 * 5.27337 * 1 2 3 26 26 H 1.09004 * 109.47212 * 171.91711 * 10 9 7 27 27 H 1.09000 * 109.47228 * 51.92088 * 10 9 7 28 28 H 1.08995 * 109.46328 * 305.85687 * 12 11 10 29 29 H 1.09000 * 109.45975 * 65.83688 * 12 11 10 30 30 H 1.08999 * 109.50126 * 60.76199 * 13 12 11 31 31 H 1.08998 * 109.50199 * 180.84563 * 13 12 11 32 32 H 1.09001 * 109.51467 * 297.75742 * 14 13 12 33 33 H 1.09007 * 109.57601 * 177.54357 * 14 13 12 34 34 H 1.09007 * 109.46724 * 54.91777 * 17 15 14 35 35 H 1.08999 * 109.47300 * 174.92061 * 17 15 14 36 36 H 1.08995 * 109.47122 * 299.99798 * 18 17 15 37 37 H 1.08999 * 109.47071 * 59.99704 * 18 17 15 38 38 H 0.96691 * 117.00075 * 179.97438 * 21 19 18 39 39 H 1.09003 * 109.46001 * 54.14810 * 22 11 10 40 40 H 1.08995 * 109.46473 * 294.17941 * 22 11 10 41 41 H 1.08997 * 117.50264 * 215.00158 * 23 9 7 42 42 H 1.09000 * 117.50132 * 0.02704 * 23 9 7 43 43 H 1.08996 * 117.50437 * 359.97438 * 24 9 7 44 44 H 1.09007 * 117.49469 * 144.97711 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0161 -1.2334 -0.3769 9 6 1.3465 -2.4443 0.5239 10 6 0.4353 -2.2509 1.7377 11 7 1.2465 -1.8806 2.9050 12 6 1.7276 -0.4975 2.7941 13 6 2.6842 -0.1946 3.9497 14 6 1.9507 -0.3947 5.2797 15 6 1.4180 -1.8286 5.3480 16 1 2.2530 -2.5287 5.3211 17 6 0.6324 -2.0204 6.6468 18 6 1.5797 -1.8855 7.8406 19 6 0.8058 -2.0739 9.1199 20 8 -0.3818 -2.2930 9.0808 21 8 1.4357 -1.9982 10.3028 22 6 0.4982 -2.0841 4.1520 23 6 0.9483 -3.5137 -0.4952 24 6 2.1396 -3.7498 0.4367 25 1 -0.4849 0.8365 -0.0772 26 1 -0.0963 -3.1798 1.9446 27 1 -0.2843 -1.4592 1.5293 28 1 2.2509 -0.3699 1.8465 29 1 0.8798 0.1863 2.8359 30 1 3.5391 -0.8690 3.9007 31 1 3.0293 0.8366 3.8755 32 1 1.1188 0.3065 5.3458 33 1 2.6400 -0.2224 6.1064 34 1 -0.1479 -1.2622 6.7147 35 1 0.1780 -3.0111 6.6536 36 1 2.3600 -2.6436 7.7727 37 1 2.0341 -0.8948 7.8337 38 1 0.8973 -2.1254 11.0958 39 1 0.1285 -3.1088 4.1905 40 1 -0.3439 -1.3929 4.1871 41 1 0.0372 -4.0796 -0.3010 42 1 1.1626 -3.3132 -1.5449 43 1 3.1370 -3.7045 -0.0004 44 1 2.0123 -4.4708 1.2443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -75.052865 kcal Electronic energy + Delta-G solvation = -23089.372171 eV Core-core repulsion = 19813.876336 eV Total energy + Delta-G solvation = -3275.495835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.44606 -38.74966 -36.66443 -36.24623 -34.09834 -32.32439 -31.65763 -29.69706 -26.06154 -25.65984 -24.75923 -22.34083 -21.65767 -20.99633 -20.29356 -19.17641 -18.94194 -18.21793 -16.68444 -16.31322 -16.02929 -14.99635 -14.66575 -14.50040 -14.06014 -13.96732 -13.79940 -13.43750 -12.97054 -12.85783 -12.59226 -12.30346 -11.91993 -11.86446 -11.72715 -11.43355 -11.11049 -10.96525 -10.85290 -10.75526 -10.67851 -10.48038 -10.35550 -10.23104 -10.09761 -9.79949 -9.68518 -9.14292 -8.93557 -8.55692 -8.00957 -7.15698 -6.14701 -4.01190 2.03289 2.86767 3.19799 3.31459 3.35121 4.30228 4.60140 4.74278 4.84812 4.95268 5.12344 5.22880 5.28943 5.44086 5.46316 5.67882 5.80546 5.86964 5.90718 6.02178 6.05435 6.15947 6.18930 6.28231 6.34135 6.38083 6.41816 6.47541 6.54761 6.65296 6.72470 6.85898 6.87683 6.98061 7.06088 7.24092 7.38925 7.47011 7.51873 7.69637 7.89391 8.23396 8.28026 8.49986 8.87656 9.43613 10.86930 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.004401 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.601490 B = 6360.191735 C = 7050.323170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.081 3.919 3 Si 0.863 3.137 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.064 3.936 10 C 0.089 3.911 11 N -0.522 5.522 12 C 0.036 3.964 13 C -0.120 4.120 14 C -0.116 4.116 15 C -0.081 4.081 16 H 0.079 0.921 17 C -0.103 4.103 18 C -0.113 4.113 19 C 0.476 3.524 20 O -0.517 6.517 21 O -0.521 6.521 22 C 0.060 3.940 23 C -0.205 4.205 24 C -0.197 4.197 25 H 0.262 0.738 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.130 0.870 29 H 0.016 0.984 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.407 0.593 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -1.798 15.166 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.123 4.123 3 Si 0.689 3.311 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.063 3.937 10 C -0.038 4.038 11 N -0.246 5.246 12 C -0.091 4.091 13 C -0.158 4.158 14 C -0.154 4.154 15 C -0.099 4.099 16 H 0.098 0.902 17 C -0.141 4.141 18 C -0.151 4.151 19 C 0.319 3.681 20 O -0.404 6.404 21 O -0.333 6.333 22 C -0.068 4.068 23 C -0.243 4.243 24 C -0.235 4.235 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.265 0.735 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.056 -1.975 14.871 15.310 hybrid contribution -0.764 1.301 0.534 1.600 sum 2.291 -0.675 15.405 15.589 Atomic orbital electron populations 1.70006 1.06143 1.26803 1.46884 1.24943 0.94515 0.98745 0.94084 0.87055 0.81419 0.84622 0.78040 1.19005 1.21089 1.20168 1.20448 0.99805 0.90996 1.41549 0.91903 1.18782 0.95206 0.87742 0.91931 1.21656 0.94919 0.99004 0.88253 1.61782 1.38570 1.23500 1.00707 1.22802 0.97361 0.87668 1.01283 1.21681 0.99305 1.00290 0.94532 1.21723 0.99574 0.96154 0.97926 1.21162 0.98434 0.97581 0.92758 0.90229 1.21485 0.97377 1.03372 0.91910 1.21494 0.99565 1.05792 0.88219 1.23796 0.86727 0.71953 0.85603 1.90729 1.17130 1.44719 1.87868 1.84562 1.47097 1.84398 1.17266 1.22027 0.94288 0.99867 0.90651 1.22953 0.96726 1.07807 0.96860 1.22735 0.95091 1.03717 1.01925 0.92790 0.94845 0.90501 0.85258 0.96610 0.91479 0.92793 0.92709 0.92662 0.91205 0.91013 0.87498 0.87433 0.73456 0.91897 0.96022 0.92129 0.90643 0.91143 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.10 11.34 55.43 0.63 -22.47 16 2 C 0.08 2.10 3.36 -17.82 -0.06 2.04 16 3 Si 0.86 19.82 28.02 -169.99 -4.76 15.06 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.49 -12.84 6.99 -34.44 -0.24 -13.08 16 8 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 9 C 0.06 1.56 1.89 -155.67 -0.29 1.27 16 10 C 0.09 2.05 4.73 -3.83 -0.02 2.03 16 11 N -0.52 -10.78 4.60 -234.67 -1.08 -11.86 16 12 C 0.04 0.76 4.00 -3.83 -0.02 0.74 16 13 C -0.12 -2.05 6.09 -26.61 -0.16 -2.21 16 14 C -0.12 -1.63 4.99 -26.56 -0.13 -1.77 16 15 C -0.08 -1.12 2.35 -90.54 -0.21 -1.33 16 16 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 17 C -0.10 -1.23 3.98 -26.73 -0.11 -1.33 16 18 C -0.11 -1.07 5.57 -27.88 -0.16 -1.22 16 19 C 0.48 5.03 8.33 36.01 0.30 5.33 16 20 O -0.52 -7.22 16.74 -18.75 -0.31 -7.53 16 21 O -0.52 -4.18 13.42 -39.27 -0.53 -4.71 16 22 C 0.06 1.05 4.72 -3.84 -0.02 1.03 16 23 C -0.20 -4.71 9.91 -26.69 -0.26 -4.98 16 24 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 25 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 26 H 0.03 0.73 7.77 -51.93 -0.40 0.33 16 27 H 0.08 1.98 5.75 -51.93 -0.30 1.69 16 28 H 0.13 3.07 2.65 -51.93 -0.14 2.93 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.63 6.70 -51.92 -0.35 0.28 16 34 H 0.07 0.90 8.10 -51.92 -0.42 0.48 16 35 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 0.90 6.63 -51.93 -0.34 0.56 16 38 H 0.41 1.61 9.10 45.56 0.41 2.03 16 39 H 0.06 1.05 7.95 -51.93 -0.41 0.63 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 43 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -29.12 340.87 -9.14 -38.26 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.57 Total: 6.23 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.65 Total: -18.11 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: -0.45 Total: -34.33 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.84 Total: -12.24 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.76 Total: 15.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.12 -9.14 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.796 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds