Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00529 * 2 1 4 4 H 1.48491 * 109.47326 * 240.00463 * 3 2 1 5 5 H 1.48505 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47351 * 119.99859 * 3 2 1 7 7 C 1.37888 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99508 * 167.02597 * 7 2 1 9 9 C 1.50697 * 120.00151 * 347.01909 * 7 2 1 10 10 C 1.53001 * 115.55019 * 324.63561 * 9 7 2 11 11 N 1.46892 * 109.47129 * 291.33138 * 10 9 7 12 12 C 1.46849 * 111.00265 * 51.66834 * 11 10 9 13 13 C 1.53030 * 109.52458 * 185.83869 * 12 11 10 14 14 C 1.53122 * 109.27702 * 300.81934 * 13 12 11 15 15 C 1.53005 * 109.52204 * 177.56250 * 14 13 12 16 16 C 1.52996 * 109.47358 * 65.31761 * 15 14 13 17 17 C 1.50703 * 109.47156 * 180.02562 * 16 15 14 18 18 O 1.20825 * 120.00067 * 359.97438 * 17 16 15 19 19 O 1.34231 * 119.99962 * 180.02562 * 17 16 15 20 20 C 1.53117 * 109.16083 * 57.65777 * 14 13 12 21 21 C 1.46856 * 110.99848 * 175.87806 * 11 10 9 22 22 C 1.53001 * 117.49666 * 110.30363 * 9 7 2 23 23 C 1.53001 * 117.50026 * 178.96450 * 9 7 2 24 24 H 0.97001 * 119.99515 * 5.01340 * 1 2 3 25 25 H 1.09000 * 109.47085 * 51.33351 * 10 9 7 26 26 H 1.09006 * 109.46865 * 171.33014 * 10 9 7 27 27 H 1.08997 * 109.46013 * 305.85468 * 12 11 10 28 28 H 1.09005 * 109.46017 * 65.81846 * 12 11 10 29 29 H 1.09000 * 109.50496 * 180.87908 * 13 12 11 30 30 H 1.09002 * 109.50548 * 60.75705 * 13 12 11 31 31 H 1.09000 * 109.52559 * 297.74481 * 14 13 12 32 32 H 1.08997 * 109.47031 * 185.31691 * 15 14 13 33 33 H 1.09007 * 109.46783 * 305.31584 * 15 14 13 34 34 H 1.09006 * 109.46853 * 300.00097 * 16 15 14 35 35 H 1.08996 * 109.47442 * 59.99746 * 16 15 14 36 36 H 0.96693 * 116.99908 * 179.97438 * 19 17 16 37 37 H 1.09007 * 109.50069 * 182.40613 * 20 14 13 38 38 H 1.09000 * 109.50453 * 62.28469 * 20 14 13 39 39 H 1.09006 * 109.46152 * 294.17681 * 21 11 10 40 40 H 1.08994 * 109.46251 * 54.14380 * 21 11 10 41 41 H 1.08998 * 117.50105 * 215.00083 * 22 9 7 42 42 H 1.09000 * 117.49730 * 0.02811 * 22 9 7 43 43 H 1.09002 * 117.49414 * 359.97438 * 23 9 7 44 44 H 1.08996 * 117.49748 * 144.97687 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0639 -1.2060 -0.2105 9 6 1.2798 -2.4827 0.2920 10 6 0.1556 -2.3875 1.3254 11 7 0.7303 -2.1251 2.6515 12 6 1.6429 -0.9753 2.6114 13 6 2.3316 -0.8214 3.9693 14 6 1.2704 -0.6168 5.0540 15 6 1.9492 -0.5230 6.4221 16 6 2.8188 0.7347 6.4748 17 6 3.4878 0.8267 7.8221 18 8 3.2890 -0.0259 8.6548 19 8 4.3037 1.8564 8.0974 20 6 0.3045 -1.8048 5.0425 21 6 -0.3256 -1.9302 3.6535 22 6 1.0951 -3.4675 -0.8642 23 6 2.0954 -3.7766 0.2526 24 1 -0.4849 0.8369 -0.0734 25 1 -0.5191 -1.5754 1.0545 26 1 -0.3973 -3.3267 1.3484 27 1 2.3950 -1.1354 1.8388 28 1 1.0779 -0.0708 2.3861 29 1 2.9972 0.0414 3.9441 30 1 2.9080 -1.7201 4.1890 31 1 0.7196 0.3026 4.8560 32 1 1.1894 -0.4723 7.2019 33 1 2.5730 -1.4030 6.5792 34 1 3.5786 0.6839 5.6949 35 1 2.1950 1.6146 6.3176 36 1 4.7095 1.8725 8.9749 37 1 -0.4783 -1.6445 5.7839 38 1 0.8490 -2.7189 5.2790 39 1 -0.8814 -1.0212 3.4233 40 1 -1.0031 -2.7838 3.6377 41 1 0.1727 -4.0477 -0.8887 42 1 1.4982 -3.1836 -1.8363 43 1 3.1560 -3.6959 0.0146 44 1 1.8312 -4.5599 0.9630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = -73.038322 kcal Electronic energy + Delta-G solvation = -23270.240648 eV Core-core repulsion = 19994.832170 eV Total energy + Delta-G solvation = -3275.408478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37615 -38.70573 -36.71395 -36.19684 -34.12086 -32.38634 -30.78375 -29.96223 -26.57420 -25.84837 -23.95206 -22.36628 -21.48255 -21.02257 -20.23787 -19.13132 -18.81663 -18.16865 -16.59086 -16.23900 -16.20209 -14.94181 -14.66421 -14.28100 -14.00780 -13.91752 -13.55712 -13.36928 -13.08112 -12.81488 -12.55573 -12.08790 -11.75331 -11.67836 -11.66529 -11.30337 -11.12929 -10.99626 -10.86669 -10.66026 -10.63811 -10.45002 -10.35805 -10.21520 -10.01018 -9.66636 -9.53447 -9.19238 -8.86033 -8.60482 -8.17624 -7.03772 -6.02889 -4.05247 2.09864 2.94788 3.20458 3.26857 3.30106 4.27669 4.75362 4.85764 4.93706 5.00631 5.08216 5.35228 5.43338 5.52196 5.58283 5.67947 5.89155 5.91374 6.04926 6.11041 6.17475 6.22038 6.33030 6.35379 6.42877 6.48513 6.50729 6.56961 6.61086 6.75268 6.78700 6.83136 6.91839 7.03884 7.19856 7.25625 7.41880 7.54112 7.65437 7.76416 8.00492 8.35647 8.41030 8.45193 8.81083 9.41246 10.86777 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.005097 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.776732 B = 5491.952040 C = 6328.804332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.076 3.924 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.056 3.944 10 C 0.078 3.922 11 N -0.526 5.526 12 C 0.041 3.959 13 C -0.119 4.119 14 C -0.089 4.089 15 C -0.100 4.100 16 C -0.117 4.117 17 C 0.478 3.522 18 O -0.519 6.519 19 O -0.520 6.520 20 C -0.104 4.104 21 C 0.055 3.945 22 C -0.205 4.205 23 C -0.199 4.199 24 H 0.262 0.738 25 H 0.097 0.903 26 H 0.027 0.973 27 H 0.133 0.867 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.406 0.594 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 2.212 11.497 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.056 3.944 10 C -0.048 4.048 11 N -0.250 5.250 12 C -0.086 4.086 13 C -0.157 4.157 14 C -0.107 4.107 15 C -0.138 4.138 16 C -0.154 4.154 17 C 0.321 3.679 18 O -0.407 6.407 19 O -0.332 6.332 20 C -0.142 4.142 21 C -0.074 4.074 22 C -0.243 4.243 23 C -0.236 4.236 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.046 0.954 27 H 0.150 0.850 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.887 1.704 11.532 12.010 hybrid contribution 0.172 1.580 0.308 1.619 sum 3.060 3.284 11.840 12.663 Atomic orbital electron populations 1.69762 1.05951 1.26696 1.48590 1.24942 0.94721 0.98774 0.94284 0.86856 0.80085 0.83322 0.79185 1.20172 1.21200 1.19360 1.20378 0.94831 0.89641 1.47221 0.91963 1.18928 0.94558 0.88223 0.92713 1.21895 0.97011 0.99869 0.86072 1.61969 1.16873 1.39628 1.06570 1.23002 0.98073 0.91389 0.96181 1.21885 0.97184 1.00611 0.95999 1.21251 0.97061 0.98786 0.93619 1.21505 0.98447 0.95775 0.98070 1.21541 1.00581 1.02190 0.91119 1.23814 0.75730 0.77732 0.90612 1.90711 1.60511 1.40091 1.49411 1.84579 1.58945 1.48405 1.41281 1.21542 0.97827 0.98163 0.96625 1.21968 0.93999 0.99050 0.92351 1.22935 0.99040 1.07535 0.94827 1.22770 0.95915 1.02793 1.02170 0.92733 0.88599 0.95427 0.85010 0.95279 0.92860 0.91923 0.91741 0.91555 0.91003 0.87128 0.87743 0.73542 0.92768 0.91547 0.95861 0.92345 0.91977 0.90705 0.91169 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.73 10.53 55.43 0.58 -22.15 16 2 C 0.08 1.90 3.00 -17.81 -0.05 1.84 16 3 Si 0.88 19.58 29.13 -169.99 -4.95 14.63 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.48 -12.20 5.91 -34.44 -0.20 -12.40 16 8 H 0.06 1.59 7.85 -52.48 -0.41 1.17 16 9 C 0.06 1.35 1.62 -155.66 -0.25 1.09 16 10 C 0.08 1.81 4.82 -3.83 -0.02 1.79 16 11 N -0.53 -10.94 4.76 -234.67 -1.12 -12.06 16 12 C 0.04 0.85 3.76 -3.84 -0.01 0.84 16 13 C -0.12 -2.00 5.08 -26.65 -0.14 -2.13 16 14 C -0.09 -1.30 2.25 -90.49 -0.20 -1.50 16 15 C -0.10 -1.26 3.98 -26.73 -0.11 -1.37 16 16 C -0.12 -1.29 5.57 -27.88 -0.16 -1.45 16 17 C 0.48 5.55 8.33 36.01 0.30 5.85 16 18 O -0.52 -7.54 16.74 -18.75 -0.31 -7.86 16 19 O -0.52 -4.78 13.42 -39.26 -0.53 -5.31 16 20 C -0.10 -1.57 5.38 -26.65 -0.14 -1.72 16 21 C 0.06 1.00 5.46 -3.83 -0.02 0.98 16 22 C -0.20 -4.63 9.91 -26.69 -0.26 -4.89 16 23 C -0.20 -4.34 9.96 -26.69 -0.27 -4.60 16 24 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 25 H 0.10 2.46 5.31 -51.93 -0.28 2.18 16 26 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 27 H 0.13 3.08 4.35 -51.93 -0.23 2.86 16 28 H 0.03 0.67 6.47 -51.93 -0.34 0.33 16 29 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.07 0.96 8.10 -51.92 -0.42 0.54 16 34 H 0.11 1.18 6.64 -51.93 -0.34 0.84 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 1.98 9.10 45.56 0.41 2.39 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -27.92 339.49 -9.32 -37.24 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.57 Total: 8.06 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -1.54 Total: -17.67 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: -0.53 Total: -34.21 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.84 Total: -13.16 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.95 Total: 14.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.92 -9.32 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.797 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds