Wall clock time and date at job start Tue Mar 31 2020 07:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 C 1.50697 * 109.50487 * 60.07952 * 3 2 1 5 5 O 1.20824 * 119.99975 * 119.91791 * 4 3 2 6 6 O 1.34232 * 119.99834 * 299.92280 * 4 3 2 7 7 C 1.53122 * 109.50293 * 299.99754 * 3 2 1 8 8 C 1.53114 * 109.16199 * 297.67547 * 7 3 2 9 9 C 1.53036 * 109.27763 * 302.34391 * 8 7 3 10 10 N 1.46855 * 109.52495 * 59.18266 * 9 8 7 11 11 C 1.46891 * 111.00216 * 174.15887 * 10 9 8 12 12 C 1.53009 * 109.47166 * 308.63175 * 11 10 9 13 13 C 1.50700 * 115.54844 * 282.90504 * 12 11 10 14 14 H 1.07997 * 119.99902 * 145.88157 * 13 12 11 15 15 C 1.37884 * 120.00064 * 325.88377 * 13 12 11 16 16 N 1.31510 * 119.99572 * 342.99612 * 15 13 12 17 17 Si 1.86792 * 119.99995 * 162.99187 * 15 13 12 18 18 H 1.48493 * 109.47094 * 94.99479 * 17 15 13 19 19 H 1.48501 * 109.47036 * 214.99489 * 17 15 13 20 20 H 1.48498 * 109.47293 * 334.99279 * 17 15 13 21 21 C 1.53001 * 117.50109 * 137.20001 * 12 11 10 22 22 C 1.52991 * 117.49935 * 68.57645 * 12 11 10 23 23 C 1.46847 * 111.19329 * 298.25864 * 10 9 8 24 24 H 1.09006 * 109.47292 * 59.99698 * 1 2 3 25 25 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47024 * 300.00292 * 1 2 3 27 27 H 1.09008 * 109.47479 * 240.00194 * 2 1 3 28 28 H 1.08998 * 109.47499 * 120.00022 * 2 1 3 29 29 H 0.96696 * 116.99717 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.51726 * 177.76743 * 7 3 2 31 31 H 1.08997 * 109.57083 * 57.61483 * 7 3 2 32 32 H 1.09000 * 109.50706 * 62.28597 * 8 7 3 33 33 H 1.09003 * 109.49965 * 182.40826 * 8 7 3 34 34 H 1.09000 * 109.46382 * 179.19594 * 9 8 7 35 35 H 1.08999 * 109.46917 * 299.16129 * 9 8 7 36 36 H 1.09000 * 109.47333 * 68.62458 * 11 10 9 37 37 H 1.08997 * 109.47227 * 188.63158 * 11 10 9 38 38 H 0.97005 * 119.99885 * 185.00995 * 16 15 13 39 39 H 1.09002 * 117.49420 * 359.97438 * 21 12 11 40 40 H 1.08997 * 117.49938 * 145.02073 * 21 12 11 41 41 H 1.09005 * 117.49694 * 214.98234 * 22 12 11 42 42 H 1.08998 * 117.50517 * 359.97438 * 22 12 11 43 43 H 1.08997 * 109.46148 * 301.72151 * 23 10 9 44 44 H 1.09004 * 109.45025 * 181.75372 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5397 2.1531 1.2312 5 8 2.3261 2.6108 2.0261 6 8 0.2203 2.2775 1.4447 7 6 1.5300 2.1651 -1.2500 8 6 2.0917 1.4728 -2.4949 9 6 3.6205 1.4737 -2.4270 10 7 4.0584 0.7704 -1.2145 11 6 5.5203 0.6306 -1.1859 12 6 6.0008 0.0262 -2.5069 13 6 5.7918 -1.4587 -2.6563 14 1 5.5659 -1.8773 -3.6259 15 6 5.8889 -2.2829 -1.5551 16 7 6.4794 -1.8524 -0.4618 17 14 5.1817 -4.0107 -1.6164 18 1 6.2520 -4.9708 -1.9874 19 1 4.6352 -4.3694 -0.2831 20 1 4.0955 -4.0653 -2.6275 21 6 7.2512 0.6320 -3.1476 22 6 5.8749 0.8875 -3.7650 23 6 3.5703 1.4442 -0.0045 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 -0.0525 2.7415 2.2480 30 1 1.8601 3.2037 -1.2305 31 1 0.4409 2.1294 -1.2735 32 1 1.7298 0.4454 -2.5346 33 1 1.7667 2.0085 -3.3869 34 1 4.0234 0.9689 -3.3051 35 1 3.9824 2.5015 -2.4014 36 1 5.9765 1.6109 -1.0478 37 1 5.8068 -0.0228 -0.3619 38 1 6.6126 -2.4548 0.2868 39 1 7.7312 1.4615 -2.6282 40 1 7.9229 -0.0435 -3.6773 41 1 5.6411 0.3800 -4.7010 42 1 5.4493 1.8846 -3.6519 43 1 3.9324 2.4722 0.0099 44 1 3.9367 0.9179 0.8770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:19 Heat of formation + Delta-G solvation = -55.214276 kcal Electronic energy + Delta-G solvation = -24229.748813 eV Core-core repulsion = 20955.113244 eV Total energy + Delta-G solvation = -3274.635569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81428 -38.71857 -36.68199 -36.10750 -33.61806 -32.20193 -31.54241 -29.46916 -26.36224 -25.27970 -24.59057 -23.18133 -22.13905 -21.56617 -20.56134 -18.98185 -18.36459 -17.84513 -16.61238 -15.95606 -15.70372 -14.87184 -14.71296 -14.27080 -14.19859 -13.81256 -13.71365 -13.13509 -12.98804 -12.78508 -12.71543 -12.28760 -12.23190 -11.63102 -11.49832 -11.27196 -11.14075 -10.89880 -10.78486 -10.68357 -10.56955 -10.46937 -10.39051 -10.18317 -10.05262 -9.92452 -9.79712 -9.15175 -9.10766 -8.48197 -7.95074 -7.30385 -5.98516 -3.97806 2.32037 3.08750 3.31440 3.40487 3.45403 4.43008 4.66207 4.75975 4.93666 5.03171 5.12108 5.34214 5.45719 5.55684 5.63104 5.64389 5.79097 5.86607 5.91452 6.05766 6.09121 6.12113 6.17840 6.21596 6.32480 6.35278 6.39184 6.49154 6.53440 6.55063 6.59848 6.69132 6.71077 6.83024 6.84149 6.97161 7.20400 7.35098 7.67945 7.95492 8.02047 8.12617 8.18985 8.53506 8.94595 9.59677 11.02610 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.006617 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.137674 B = 4230.511065 C = 4833.976393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.040 4.040 4 C 0.489 3.511 5 O -0.517 6.517 6 O -0.508 6.508 7 C -0.107 4.107 8 C -0.117 4.117 9 C 0.034 3.966 10 N -0.509 5.509 11 C 0.082 3.918 12 C 0.066 3.934 13 C -0.476 4.476 14 H 0.058 0.942 15 C 0.080 3.920 16 N -0.876 5.876 17 Si 0.890 3.110 18 H -0.285 1.285 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.207 4.207 22 C -0.221 4.221 23 C 0.079 3.921 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.398 0.602 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.014 0.986 36 H -0.009 1.009 37 H 0.137 0.863 38 H 0.261 0.739 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.028 0.972 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 6.772 0.915 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.143 4.143 3 C -0.042 4.042 4 C 0.331 3.669 5 O -0.405 6.405 6 O -0.320 6.320 7 C -0.145 4.145 8 C -0.155 4.155 9 C -0.093 4.093 10 N -0.233 5.233 11 C -0.044 4.044 12 C 0.065 3.935 13 C -0.513 4.513 14 H 0.076 0.924 15 C -0.122 4.122 16 N -0.514 5.514 17 Si 0.718 3.282 18 H -0.212 1.212 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.246 4.246 22 C -0.259 4.259 23 C -0.050 4.050 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.256 0.744 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.032 0.968 36 H 0.009 0.991 37 H 0.154 0.846 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.607 6.167 0.990 13.181 hybrid contribution -0.034 0.443 0.608 0.753 sum -11.641 6.610 1.598 13.482 Atomic orbital electron populations 1.22119 0.95782 1.01285 1.02885 1.21517 0.95313 0.92733 1.04786 1.20622 0.97171 0.96559 0.89799 1.23744 0.79624 0.76137 0.87394 1.90699 1.56811 1.46096 1.46852 1.84701 1.26625 1.72546 1.48125 1.21668 1.00842 0.98443 0.93529 1.21676 0.96620 1.01389 0.95783 1.22779 0.93929 0.95717 0.96921 1.61817 1.13820 1.48329 0.99335 1.22146 0.82792 0.96755 1.02730 1.18947 0.93905 0.93120 0.87512 1.20379 1.47635 0.89253 0.94068 0.92419 1.24827 0.94075 0.98229 0.95086 1.69664 1.40530 1.35255 1.05924 0.86623 0.79682 0.84335 0.77607 1.21188 1.21049 1.19684 1.23070 0.91553 1.02910 1.07041 1.23136 1.01989 1.00646 1.00088 1.21816 0.90266 0.97286 0.95628 0.92530 0.93080 0.91147 0.87956 0.91955 0.74387 0.92477 0.90688 0.90410 0.91914 0.87083 0.96758 0.99054 0.84579 0.92833 0.92041 0.90495 0.90615 0.90964 0.95376 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.11 -1.60 4.54 -26.73 -0.12 -1.72 16 3 C -0.04 -0.61 0.51 -155.58 -0.08 -0.69 16 4 C 0.49 7.15 6.86 36.00 0.25 7.40 16 5 O -0.52 -9.14 16.74 -18.75 -0.31 -9.46 16 6 O -0.51 -5.46 10.28 -39.26 -0.40 -5.86 16 7 C -0.11 -1.45 4.43 -26.61 -0.12 -1.57 16 8 C -0.12 -1.69 5.74 -26.65 -0.15 -1.85 16 9 C 0.03 0.61 3.96 -3.83 -0.02 0.59 16 10 N -0.51 -10.28 4.05 -234.67 -0.95 -11.24 16 11 C 0.08 1.90 4.86 -3.82 -0.02 1.89 16 12 C 0.07 1.58 1.57 -155.66 -0.24 1.34 16 13 C -0.48 -12.55 9.02 -34.44 -0.31 -12.87 16 14 H 0.06 1.53 7.87 -52.49 -0.41 1.12 16 15 C 0.08 2.12 5.16 -17.82 -0.09 2.03 16 16 N -0.88 -23.74 10.74 55.43 0.60 -23.14 16 17 Si 0.89 20.71 29.57 -169.99 -5.03 15.68 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.21 -4.69 9.88 -26.73 -0.26 -4.95 16 22 C -0.22 -4.64 7.24 -26.74 -0.19 -4.83 16 23 C 0.08 1.46 3.47 -3.83 -0.01 1.45 16 24 H 0.06 0.65 6.38 -51.93 -0.33 0.31 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.82 5.33 -51.93 -0.28 0.54 16 27 H 0.10 1.73 6.01 -51.92 -0.31 1.41 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.40 2.57 9.10 45.56 0.41 2.99 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.89 6.32 -51.93 -0.33 0.56 16 32 H 0.08 1.17 6.58 -51.93 -0.34 0.82 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 2.14 4.31 -51.93 -0.22 1.92 16 35 H 0.01 0.26 7.69 -51.93 -0.40 -0.14 16 36 H -0.01 -0.20 7.97 -51.93 -0.41 -0.62 16 37 H 0.14 3.57 5.15 -51.93 -0.27 3.30 16 38 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 39 H 0.06 1.33 8.11 -51.93 -0.42 0.91 16 40 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.07 1.40 6.08 -51.93 -0.32 1.08 16 43 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 44 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -28.66 329.26 -8.32 -36.98 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.14 Total: 7.51 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.04 Total: -15.43 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: -0.36 Total: -34.38 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.72 Total: -15.32 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.66 -8.32 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds