Wall clock time and date at job start Tue Mar 31 2020 07:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47290 * 2 1 4 4 C 1.50696 * 109.50664 * 300.88934 * 3 2 1 5 5 O 1.20823 * 120.00027 * 250.37960 * 4 3 2 6 6 O 1.34228 * 120.00060 * 70.37732 * 4 3 2 7 7 C 1.53120 * 109.50432 * 60.96727 * 3 2 1 8 8 C 1.53119 * 109.16379 * 177.63376 * 7 3 2 9 9 C 1.53042 * 109.27678 * 302.34789 * 8 7 3 10 10 N 1.46847 * 109.52601 * 59.17676 * 9 8 7 11 11 C 1.46898 * 111.00167 * 174.15976 * 10 9 8 12 12 C 1.52998 * 109.47033 * 77.25610 * 11 10 9 13 13 C 1.50698 * 115.54904 * 293.65628 * 12 11 10 14 14 H 1.08002 * 120.00095 * 144.00035 * 13 12 11 15 15 C 1.37878 * 120.00395 * 323.99769 * 13 12 11 16 16 N 1.31510 * 119.99946 * 163.19945 * 15 13 12 17 17 Si 1.86800 * 119.99685 * 343.20898 * 15 13 12 18 18 H 1.48499 * 109.47078 * 95.06627 * 17 15 13 19 19 H 1.48504 * 109.46669 * 215.06370 * 17 15 13 20 20 H 1.48499 * 109.47013 * 335.05964 * 17 15 13 21 21 C 1.52998 * 117.49885 * 147.98949 * 12 11 10 22 22 C 1.52996 * 117.49917 * 79.32489 * 12 11 10 23 23 C 1.46845 * 111.19492 * 298.26049 * 10 9 8 24 24 H 1.09001 * 109.47413 * 300.00341 * 1 2 3 25 25 H 1.09010 * 109.46449 * 60.00034 * 1 2 3 26 26 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47413 * 239.99659 * 2 1 3 28 28 H 1.09005 * 109.46757 * 120.00305 * 2 1 3 29 29 H 0.96700 * 117.00641 * 179.97438 * 6 4 3 30 30 H 1.09006 * 109.52093 * 57.73018 * 7 3 2 31 31 H 1.08994 * 109.52782 * 297.54258 * 7 3 2 32 32 H 1.09001 * 109.50710 * 182.40496 * 8 7 3 33 33 H 1.08996 * 109.50425 * 62.28339 * 8 7 3 34 34 H 1.08999 * 109.46164 * 299.15707 * 9 8 7 35 35 H 1.08998 * 109.45967 * 179.19514 * 9 8 7 36 36 H 1.09000 * 109.47117 * 317.25838 * 11 10 9 37 37 H 1.09001 * 109.46958 * 197.26002 * 11 10 9 38 38 H 0.97001 * 120.00045 * 185.00163 * 16 15 13 39 39 H 1.09004 * 117.49975 * 359.97438 * 21 12 11 40 40 H 1.09000 * 117.50305 * 145.02362 * 21 12 11 41 41 H 1.08995 * 117.50436 * 214.97601 * 22 12 11 42 42 H 1.09002 * 117.49679 * 359.97438 * 22 12 11 43 43 H 1.09000 * 109.45776 * 181.75962 * 23 10 9 44 44 H 1.09000 * 109.46361 * 301.71769 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5203 2.1599 -1.2190 5 8 2.2765 2.4578 -2.1130 6 8 0.2171 2.4681 -1.3116 7 6 1.5501 2.1579 1.2620 8 6 2.1133 3.5816 1.2834 9 6 3.6415 3.5213 1.2262 10 7 4.0599 2.8284 0.0009 11 6 5.5197 2.8730 -0.1568 12 6 6.1653 1.8495 0.7794 13 6 6.0162 2.1311 2.2523 14 1 5.8844 1.3151 2.9474 15 6 6.0482 3.4304 2.7125 16 7 5.5979 3.7132 3.9153 17 14 6.7309 4.7890 1.6274 18 1 5.6166 5.4498 0.9015 19 1 7.4346 5.7890 2.4701 20 1 7.6843 4.2083 0.6481 21 6 7.4640 1.1876 0.3146 22 6 6.1606 0.3852 0.3361 23 6 3.5703 1.4442 -0.0198 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 -0.0693 2.9287 -2.1122 30 1 1.8935 1.6171 2.1439 31 1 0.4609 2.1972 1.2589 32 1 1.8029 4.0821 2.2006 33 1 1.7386 4.1342 0.4218 34 1 4.0163 2.9805 2.0952 35 1 4.0451 4.5337 1.2269 36 1 5.8816 3.8709 0.0909 37 1 5.7810 2.6375 -1.1885 38 1 5.5529 4.6357 4.2119 39 1 7.8583 1.4810 -0.6583 40 1 8.2105 0.9554 1.0742 41 1 6.0501 -0.3746 1.1098 42 1 5.6971 0.1509 -0.6223 43 1 3.9224 0.9480 -0.9243 44 1 3.9455 0.9131 0.8549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:24 Heat of formation + Delta-G solvation = -50.099841 kcal Electronic energy + Delta-G solvation = -24941.128155 eV Core-core repulsion = 21666.714364 eV Total energy + Delta-G solvation = -3274.413791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67153 -38.60794 -36.53741 -35.71955 -34.12615 -32.44162 -31.53058 -29.26535 -26.69176 -25.47840 -24.27438 -23.28973 -22.25835 -21.36278 -20.35767 -19.21031 -18.84902 -17.42874 -16.37998 -16.03115 -15.42972 -15.33365 -14.87310 -14.07968 -13.95210 -13.79211 -13.74363 -13.21349 -13.08795 -12.81581 -12.73890 -12.16658 -12.03182 -11.99366 -11.69025 -11.38702 -11.17177 -11.05709 -10.74118 -10.69198 -10.61954 -10.50783 -10.22625 -10.04215 -9.83028 -9.77718 -9.67549 -9.43821 -9.06407 -8.66776 -8.36485 -7.17308 -6.26022 -4.13915 2.70980 3.18861 3.34270 3.37897 3.38555 4.27506 4.54815 4.80645 4.89831 5.07964 5.20995 5.33820 5.41972 5.50039 5.59623 5.69459 5.78014 5.83593 5.96595 6.01454 6.03576 6.05869 6.14265 6.21324 6.30693 6.36711 6.40204 6.43160 6.50949 6.54084 6.56061 6.61629 6.67335 6.75134 6.85275 6.88542 7.01923 7.16688 7.42886 7.66019 7.94017 8.01623 8.34017 8.42673 8.78990 9.37744 10.82302 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.007469 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.597147 B = 3747.680015 C = 4039.459745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.043 4.043 4 C 0.493 3.507 5 O -0.495 6.495 6 O -0.521 6.521 7 C -0.106 4.106 8 C -0.117 4.117 9 C 0.017 3.983 10 N -0.518 5.518 11 C 0.085 3.915 12 C -0.021 4.021 13 C -0.490 4.490 14 H 0.076 0.924 15 C 0.088 3.912 16 N -0.881 5.881 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.300 1.300 20 H -0.263 1.263 21 C -0.210 4.210 22 C -0.188 4.188 23 C 0.076 3.924 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.396 0.604 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.268 0.732 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -3.986 -7.036 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.044 4.044 4 C 0.335 3.665 5 O -0.380 6.380 6 O -0.332 6.332 7 C -0.143 4.143 8 C -0.155 4.155 9 C -0.110 4.110 10 N -0.240 5.240 11 C -0.043 4.043 12 C -0.023 4.023 13 C -0.527 4.527 14 H 0.094 0.906 15 C -0.117 4.117 16 N -0.516 5.516 17 Si 0.708 3.292 18 H -0.198 1.198 19 H -0.228 1.228 20 H -0.189 1.189 21 C -0.248 4.248 22 C -0.226 4.226 23 C -0.052 4.052 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.253 0.747 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.925 -3.704 -7.145 12.778 hybrid contribution 0.701 0.767 -0.464 1.138 sum -9.224 -2.936 -7.609 12.313 Atomic orbital electron populations 1.21974 0.95025 1.01249 1.03278 1.21533 0.96608 0.93682 1.03197 1.20795 0.97370 0.94850 0.91407 1.23304 0.78933 0.76116 0.88195 1.90685 1.57228 1.49789 1.40343 1.84638 1.28569 1.72358 1.47677 1.21684 1.00295 0.96515 0.95815 1.21635 0.97139 0.95776 1.00921 1.22866 0.93282 0.99875 0.95021 1.62317 1.10655 1.13984 1.37007 1.21888 0.86961 0.98181 0.97221 1.20096 0.95627 0.90514 0.96042 1.20238 1.50431 0.93565 0.88435 0.90584 1.24918 0.93550 0.98437 0.94749 1.69906 1.43292 1.19674 1.18752 0.87217 0.79987 0.81834 0.80142 1.19825 1.22810 1.18868 1.23118 0.92391 1.08600 1.00721 1.22871 1.02474 0.96415 1.00807 1.22071 0.89220 0.91760 1.02172 0.92029 0.91492 0.93025 0.91683 0.90085 0.74664 0.90391 0.91090 0.91580 0.93159 0.87142 0.92034 0.92353 0.92340 0.92247 0.91546 0.90005 0.90187 0.90832 0.91197 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.04 37.16 0.34 -1.39 16 2 C -0.11 -1.43 4.99 -26.73 -0.13 -1.56 16 3 C -0.04 -0.67 0.52 -155.59 -0.08 -0.75 16 4 C 0.49 7.86 5.30 36.00 0.19 8.05 16 5 O -0.50 -9.52 16.24 -18.75 -0.30 -9.82 16 6 O -0.52 -6.40 10.53 -39.25 -0.41 -6.81 16 7 C -0.11 -1.65 4.26 -26.61 -0.11 -1.76 16 8 C -0.12 -2.10 5.84 -26.65 -0.16 -2.25 16 9 C 0.02 0.36 3.88 -3.83 -0.01 0.34 16 10 N -0.52 -10.95 4.00 -234.67 -0.94 -11.89 16 11 C 0.08 1.90 5.02 -3.83 -0.02 1.88 16 12 C -0.02 -0.47 0.54 -155.67 -0.08 -0.55 16 13 C -0.49 -12.75 7.59 -34.44 -0.26 -13.01 16 14 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 15 C 0.09 2.33 3.23 -17.82 -0.06 2.27 16 16 N -0.88 -24.45 13.82 55.43 0.77 -23.68 16 17 Si 0.88 21.40 22.71 -169.99 -3.86 17.54 16 18 H -0.27 -6.48 5.65 56.52 0.32 -6.16 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.26 -6.38 6.98 56.52 0.39 -5.99 16 21 C -0.21 -4.43 9.92 -26.69 -0.26 -4.70 16 22 C -0.19 -3.76 7.68 -26.69 -0.21 -3.97 16 23 C 0.08 1.42 2.24 -3.84 -0.01 1.41 16 24 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 25 H 0.07 0.74 5.76 -51.92 -0.30 0.45 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.40 3.30 9.10 45.56 0.41 3.72 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.97 6.33 -51.93 -0.33 0.64 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.90 7.35 -51.93 -0.38 0.52 16 34 H 0.11 2.68 4.49 -51.93 -0.23 2.45 16 35 H 0.06 1.44 5.24 -51.93 -0.27 1.17 16 36 H 0.06 1.39 2.29 -51.93 -0.12 1.27 16 37 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.27 7.08 8.32 -40.82 -0.34 6.74 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.07 1.35 6.78 -51.93 -0.35 1.00 16 43 H 0.07 1.31 6.73 -51.93 -0.35 0.96 16 44 H 0.07 1.44 5.97 -51.93 -0.31 1.13 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -29.29 313.23 -6.92 -36.20 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.02 Total: 9.71 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.87 Total: -15.97 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.17 Total: -35.57 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.72 Total: -16.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -3.86 Total: 17.54 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.29 -6.92 -36.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.895 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds