Wall clock time and date at job start Tue Mar 31 2020 08:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47230 * 2 1 4 4 C 1.52993 * 109.46796 * 120.00547 * 2 1 3 5 5 C 1.53005 * 109.47554 * 64.99749 * 4 2 1 6 6 N 1.46894 * 109.47076 * 179.97438 * 5 4 2 7 7 C 1.46901 * 110.99852 * 66.05021 * 6 5 4 8 8 C 1.50702 * 109.47447 * 193.95118 * 7 6 5 9 9 H 1.08007 * 119.99736 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00519 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99489 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 119.99990 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47370 * 60.00271 * 12 10 8 14 14 H 1.48498 * 109.47126 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47074 * 299.99846 * 12 10 8 16 16 C 1.46903 * 110.99739 * 189.99626 * 6 5 4 17 17 C 1.50704 * 109.46973 * 170.00408 * 16 6 5 18 18 C 1.34515 * 125.79063 * 90.00036 * 17 16 6 19 19 C 1.41385 * 106.83992 * 180.02562 * 18 17 16 20 20 C 1.34512 * 106.83926 * 0.23220 * 19 18 17 21 21 C 1.50702 * 125.78762 * 179.76997 * 20 19 18 22 22 O 1.42900 * 109.47257 * 89.99768 * 21 20 19 23 23 O 1.34305 * 108.42433 * 359.63135 * 20 19 18 24 24 H 1.09001 * 109.47114 * 300.00093 * 1 2 3 25 25 H 1.09009 * 109.47297 * 59.99541 * 1 2 3 26 26 H 1.08998 * 109.47731 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46590 * 240.00462 * 2 1 3 28 28 H 1.09001 * 109.47223 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47432 * 300.00157 * 3 2 1 30 30 H 1.09007 * 109.46834 * 60.00218 * 3 2 1 31 31 H 1.09002 * 109.47415 * 304.99705 * 4 2 1 32 32 H 1.09003 * 109.46951 * 184.99569 * 4 2 1 33 33 H 1.09002 * 109.46795 * 59.99576 * 5 4 2 34 34 H 1.09003 * 109.46844 * 299.99885 * 5 4 2 35 35 H 1.09000 * 109.46991 * 313.94871 * 7 6 5 36 36 H 1.08999 * 109.47261 * 73.95028 * 7 6 5 37 37 H 0.97002 * 119.99271 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.47126 * 50.00665 * 16 6 5 39 39 H 1.09000 * 109.47165 * 290.00520 * 16 6 5 40 40 H 1.08002 * 126.57938 * 359.97438 * 18 17 16 41 41 H 1.08002 * 126.57514 * 179.97438 * 19 18 17 42 42 H 1.08999 * 109.47456 * 209.99695 * 21 20 19 43 43 H 1.09008 * 109.47140 * 329.99897 * 21 20 19 44 44 H 0.96699 * 114.00073 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 1.6351 -2.1956 1.1878 6 7 2.1253 -2.8882 2.3869 7 6 1.4521 -2.3909 3.5942 8 6 2.2008 -2.8586 4.8156 9 1 3.0878 -3.4650 4.7060 10 6 1.7535 -2.5124 6.0731 11 7 0.6738 -1.7736 6.2065 12 14 2.6812 -3.0927 7.5869 13 1 4.0716 -2.5727 7.5450 14 1 2.0016 -2.5889 8.8073 15 1 2.7084 -4.5772 7.6120 16 6 1.9659 -4.3428 2.2567 17 6 2.6944 -5.0306 3.3825 18 6 2.1718 -5.3455 4.5813 19 6 3.1982 -5.9739 5.3233 20 6 4.2881 -6.0008 4.5353 21 6 5.6310 -6.5744 4.9078 22 8 5.6769 -7.9553 4.5431 23 8 3.9756 -5.4326 3.3592 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6053 -0.2619 2.1369 32 1 3.1263 -0.6445 1.2950 33 1 2.0697 -2.6550 0.3000 34 1 0.5488 -2.2724 1.1419 35 1 1.4313 -1.3013 3.5759 36 1 0.4318 -2.7733 3.6250 37 1 0.3589 -1.5303 7.0911 38 1 2.3798 -4.6697 1.3029 39 1 0.9070 -4.5976 2.2998 40 1 1.1621 -5.1542 4.9137 41 1 3.1229 -6.3551 6.3310 42 1 6.4163 -6.0330 4.3804 43 1 5.7819 -6.4774 5.9830 44 1 6.5143 -8.3902 4.7544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:06 Heat of formation + Delta-G solvation = -31.976853 kcal Electronic energy + Delta-G solvation = -23020.093563 eV Core-core repulsion = 19746.465644 eV Total energy + Delta-G solvation = -3273.627919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -41.81830 -37.62895 -36.67240 -35.46778 -32.68674 -32.01692 -30.78636 -28.64754 -27.66264 -26.96915 -25.76375 -23.07779 -22.81320 -20.93118 -20.41818 -19.41428 -19.21279 -17.47347 -16.69058 -16.06092 -15.30098 -14.87106 -14.64965 -14.59133 -14.43390 -14.04477 -13.73645 -13.40122 -13.15860 -12.63059 -12.52164 -12.39506 -12.03201 -12.00645 -11.91496 -11.44877 -11.34362 -11.25810 -10.97282 -10.85617 -10.59766 -10.57025 -10.40444 -10.30675 -10.08039 -9.99665 -9.73528 -9.30874 -8.61924 -8.36971 -7.32885 -7.23323 -5.97619 -3.88544 2.40923 3.35487 3.40223 3.42376 3.45354 3.67739 4.48820 4.69313 4.86725 5.14436 5.20855 5.23227 5.33715 5.36434 5.39976 5.52617 5.68275 5.75072 5.78452 5.89746 5.92844 5.96405 5.97607 6.02521 6.08106 6.18356 6.21132 6.32525 6.39054 6.45969 6.69547 6.74105 6.83274 6.88014 6.96477 7.23298 7.30371 7.46330 7.63574 7.86994 8.06380 8.09275 8.18710 8.55932 9.11148 9.67366 11.13261 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.005660 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.936794 B = 4945.494266 C = 6221.761462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.059 3.941 6 N -0.538 5.538 7 C 0.188 3.812 8 C -0.492 4.492 9 H 0.075 0.925 10 C 0.057 3.943 11 N -0.902 5.902 12 Si 0.881 3.119 13 H -0.280 1.280 14 H -0.293 1.293 15 H -0.265 1.265 16 C 0.149 3.851 17 C 0.014 3.986 18 C -0.136 4.136 19 C -0.185 4.185 20 C -0.052 4.052 21 C 0.165 3.835 22 O -0.569 6.569 23 O -0.170 6.170 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.026 0.974 35 H 0.036 0.964 36 H -0.009 1.009 37 H 0.259 0.741 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -3.547 -7.919 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.148 4.148 5 C -0.069 4.069 6 N -0.263 5.263 7 C 0.063 3.937 8 C -0.530 4.530 9 H 0.093 0.907 10 C -0.144 4.144 11 N -0.542 5.542 12 Si 0.709 3.291 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.190 1.190 16 C 0.021 3.979 17 C -0.037 4.037 18 C -0.156 4.156 19 C -0.205 4.205 20 C -0.102 4.102 21 C 0.088 3.912 22 O -0.375 6.375 23 O -0.067 6.067 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.009 0.991 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.565 -3.185 -8.183 9.897 hybrid contribution 0.009 -0.300 1.452 1.483 sum 4.574 -3.486 -6.730 8.853 Atomic orbital electron populations 1.21894 0.95632 1.01782 1.01243 1.21091 0.95654 0.95984 0.98652 1.21818 1.00850 0.96265 1.01315 1.21645 1.01405 0.94448 0.97291 1.22047 0.97017 0.94706 0.93147 1.62167 1.59075 1.01399 1.03681 1.19881 0.91908 0.96279 0.85619 1.21551 1.11076 1.30815 0.89596 0.90742 1.24847 0.95183 0.95542 0.98799 1.69955 1.23367 1.37761 1.23134 0.86811 0.80002 0.79891 0.82360 1.20561 1.21902 1.19026 1.20175 0.95827 0.88697 0.93203 1.21765 0.81143 1.01836 0.98958 1.21233 1.01280 1.00338 0.92743 1.21481 0.93118 1.05139 1.00725 1.21446 0.97004 1.05799 0.85984 1.20173 0.91079 0.81472 0.98457 1.86600 1.41097 1.23408 1.86377 1.83835 1.28424 1.60026 1.34422 0.92574 0.93453 0.92544 0.91772 0.92835 0.93285 0.92643 0.91020 0.91545 0.92382 0.95557 0.94577 0.99143 0.93149 0.91247 0.92856 0.83778 0.84748 0.92270 0.91013 0.77525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.52 16 3 C -0.15 -1.75 9.19 37.15 0.34 -1.41 16 4 C -0.11 -1.82 4.64 -26.73 -0.12 -1.94 16 5 C 0.06 1.02 4.71 -3.82 -0.02 1.00 16 6 N -0.54 -11.41 4.56 -237.51 -1.08 -12.49 16 7 C 0.19 4.71 4.58 -4.97 -0.02 4.69 16 8 C -0.49 -13.27 5.63 -34.44 -0.19 -13.47 16 9 H 0.07 2.05 4.58 -52.48 -0.24 1.81 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 12 Si 0.88 21.62 29.00 -169.99 -4.93 16.69 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.27 -6.16 6.04 56.52 0.34 -5.81 16 16 C 0.15 2.92 5.49 -4.97 -0.03 2.89 16 17 C 0.01 0.29 4.78 -35.62 -0.17 0.12 16 18 C -0.14 -3.01 7.20 -39.70 -0.29 -3.30 16 19 C -0.18 -3.85 9.52 -39.70 -0.38 -4.23 16 20 C -0.05 -1.04 6.87 -35.62 -0.24 -1.28 16 21 C 0.17 2.46 7.57 36.01 0.27 2.73 16 22 O -0.57 -7.89 13.64 -35.23 -0.48 -8.37 16 23 O -0.17 -3.67 10.65 5.70 0.06 -3.61 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 31 H 0.07 1.36 6.31 -51.93 -0.33 1.03 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 34 H 0.03 0.45 6.55 -51.93 -0.34 0.11 16 35 H 0.04 0.97 5.98 -51.93 -0.31 0.66 16 36 H -0.01 -0.25 7.99 -51.93 -0.41 -0.66 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.05 1.01 8.01 -51.93 -0.42 0.59 16 40 H 0.14 3.33 7.77 -52.49 -0.41 2.92 16 41 H 0.13 2.62 7.57 -52.49 -0.40 2.22 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 44 H 0.38 2.92 9.12 45.56 0.42 3.33 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -31.57 346.82 -7.96 -39.52 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.60 Total: 4.41 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.88 Total: -15.79 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.35 Total: -38.08 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.42 Total: -11.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.93 Total: 16.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.57 -7.96 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.547 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds