Wall clock time and date at job start Tue Mar 31 2020 08:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47515 * 2 1 4 4 C 1.53002 * 109.46664 * 240.00248 * 2 1 3 5 5 C 1.52998 * 109.47548 * 120.00415 * 2 1 3 6 6 N 1.46896 * 109.47387 * 82.04052 * 5 2 1 7 7 C 1.46903 * 111.00163 * 80.93310 * 6 5 2 8 8 C 1.50697 * 109.46963 * 75.35197 * 7 6 5 9 9 H 1.07999 * 120.00197 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99909 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99781 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99928 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46935 * 90.00110 * 12 10 8 14 14 H 1.48496 * 109.46932 * 209.99686 * 12 10 8 15 15 H 1.48498 * 109.47058 * 329.99725 * 12 10 8 16 16 C 1.46904 * 111.00011 * 316.97992 * 6 5 2 17 17 C 1.50700 * 109.47238 * 277.32712 * 16 6 5 18 18 C 1.34516 * 125.78851 * 82.99264 * 17 16 6 19 19 C 1.41381 * 106.83870 * 180.02562 * 18 17 16 20 20 C 1.34511 * 106.84096 * 0.23188 * 19 18 17 21 21 C 1.50703 * 125.78580 * 179.77328 * 20 19 18 22 22 O 1.42901 * 109.47207 * 89.99742 * 21 20 19 23 23 O 1.34297 * 125.79129 * 263.02306 * 17 16 6 24 24 H 1.09005 * 109.46610 * 308.39837 * 1 2 3 25 25 H 1.08999 * 109.47407 * 68.39547 * 1 2 3 26 26 H 1.09000 * 109.47213 * 188.39928 * 1 2 3 27 27 H 1.08994 * 109.47375 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46839 * 300.00838 * 3 2 1 29 29 H 1.09003 * 109.47087 * 59.99767 * 3 2 1 30 30 H 1.08997 * 109.47278 * 281.22087 * 4 2 1 31 31 H 1.08996 * 109.47584 * 41.22342 * 4 2 1 32 32 H 1.09009 * 109.47304 * 161.22409 * 4 2 1 33 33 H 1.09000 * 109.46961 * 322.03960 * 5 2 1 34 34 H 1.08998 * 109.47422 * 202.04265 * 5 2 1 35 35 H 1.08993 * 109.47224 * 195.35832 * 7 6 5 36 36 H 1.09004 * 109.46961 * 315.35253 * 7 6 5 37 37 H 0.97007 * 119.99888 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.47221 * 157.32495 * 16 6 5 39 39 H 1.09005 * 109.47020 * 37.32663 * 16 6 5 40 40 H 1.07997 * 126.58249 * 359.97438 * 18 17 16 41 41 H 1.08001 * 126.57848 * 179.97438 * 19 18 17 42 42 H 1.09004 * 109.46711 * 209.99472 * 21 20 19 43 43 H 1.09001 * 109.47497 * 329.99645 * 21 20 19 44 44 H 0.96708 * 113.99885 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2491 6 7 2.0226 -2.1719 1.0185 7 6 3.2035 -2.5980 0.2556 8 6 4.4107 -2.5987 1.1575 9 1 4.3107 -2.3117 2.1939 10 6 5.6430 -2.9656 0.6596 11 7 5.7647 -3.3156 -0.6022 12 14 7.1394 -2.9671 1.7778 13 1 7.2778 -4.3001 2.4176 14 1 8.3554 -2.6734 0.9777 15 1 6.9744 -1.9292 2.8269 16 6 0.7838 -2.5829 0.3441 17 6 -0.3141 -2.7428 1.3640 18 6 -1.0758 -1.7521 1.8617 19 6 -1.9702 -2.3459 2.7817 20 6 -1.6981 -3.6631 2.7949 21 6 -2.3995 -4.6994 3.6347 22 8 -3.5162 -5.2218 2.9121 23 8 -0.6976 -3.8984 1.9305 24 1 -0.3633 0.6384 0.8055 25 1 -0.3634 0.3784 -0.9554 26 1 -0.3633 -1.0166 0.1501 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.9724 -1.7988 -1.0998 31 1 1.4323 -0.4348 -2.1077 32 1 3.0784 -0.4439 -1.4306 33 1 1.3973 -0.4803 2.0958 34 1 3.0593 -0.3998 1.4637 35 1 3.0408 -3.6026 -0.1347 36 1 3.3690 -1.9090 -0.5726 37 1 6.6317 -3.5734 -0.9526 38 1 0.9459 -3.5318 -0.1670 39 1 0.4966 -1.8230 -0.3828 40 1 -1.0152 -0.7041 1.6080 41 1 -2.7241 -1.8385 3.3653 42 1 -1.7067 -5.5082 3.8671 43 1 -2.7478 -4.2419 4.5607 44 1 -4.0154 -5.8961 3.3931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:15 Heat of formation + Delta-G solvation = 36.514423 kcal Electronic energy + Delta-G solvation = -23421.586165 eV Core-core repulsion = 20150.928251 eV Total energy + Delta-G solvation = -3270.657914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -42.36870 -39.66476 -36.93581 -34.02602 -32.97119 -32.44857 -31.14918 -28.29753 -27.71210 -26.75685 -26.39836 -24.73234 -23.13147 -21.45471 -20.59529 -19.75254 -18.54886 -17.72775 -16.70420 -16.22941 -15.77130 -15.32592 -14.91925 -14.76127 -14.46702 -14.20021 -14.11408 -13.25220 -13.19111 -12.99154 -12.66717 -12.42006 -12.02455 -11.87338 -11.58364 -11.47134 -11.27358 -11.11485 -11.02272 -10.83482 -10.75806 -10.51516 -10.30665 -10.28092 -10.05847 -9.78037 -9.68973 -9.52056 -9.18271 -8.39033 -8.06869 -7.10270 -5.99603 -3.99446 1.94161 2.85090 3.16627 3.33504 3.39616 3.43435 4.38146 4.45362 4.86869 4.95916 5.07694 5.13816 5.16391 5.19753 5.29987 5.35051 5.40590 5.44686 5.62839 5.81880 5.86765 5.91872 6.00663 6.03361 6.06780 6.17925 6.25116 6.27898 6.30264 6.38595 6.45755 6.57756 6.67962 6.80171 6.83904 6.85866 7.22168 7.38006 7.39199 7.54393 7.83490 8.09335 8.20150 8.54743 9.06966 9.63264 11.10199 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.005303 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.136632 B = 5279.000673 C = 6504.798748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 C -0.134 4.134 4 C -0.168 4.168 5 C 0.070 3.930 6 N -0.525 5.525 7 C 0.163 3.837 8 C -0.501 4.501 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.900 5.900 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.077 3.923 17 C 0.040 3.960 18 C -0.244 4.244 19 C -0.183 4.183 20 C -0.041 4.041 21 C 0.162 3.838 22 O -0.568 6.568 23 O -0.164 6.164 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.164 0.836 41 H 0.142 0.858 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.292 3.386 4.235 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.104 4.104 3 C -0.192 4.192 4 C -0.224 4.224 5 C -0.059 4.059 6 N -0.248 5.248 7 C 0.040 3.960 8 C -0.540 4.540 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.723 3.277 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.050 4.050 17 C -0.012 4.012 18 C -0.263 4.263 19 C -0.202 4.202 20 C -0.091 4.091 21 C 0.084 3.916 22 O -0.375 6.375 23 O -0.060 6.060 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.182 0.818 41 H 0.160 0.840 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -14.767 3.201 4.059 15.646 hybrid contribution 0.645 0.139 0.373 0.758 sum -14.122 3.340 4.432 15.173 Atomic orbital electron populations 1.23296 0.95847 1.04011 1.01182 1.21189 0.95020 0.96313 0.97833 1.21818 1.01307 0.95329 1.00705 1.22786 1.01270 1.02602 0.95775 1.22235 1.01916 0.87198 0.94566 1.62117 1.01060 1.12461 1.49174 1.20543 0.85608 0.96214 0.93680 1.21169 0.91708 1.44249 0.96826 0.92084 1.24938 0.98862 0.95679 0.95078 1.69944 1.24424 1.46336 1.13304 0.86540 0.82202 0.78381 0.80539 1.20767 1.21400 1.19923 1.21736 0.88587 1.03011 0.91674 1.22846 0.97802 0.82532 0.97977 1.22275 1.00165 1.01403 1.02432 1.21561 1.02484 0.93359 1.02809 1.21766 0.93918 0.95159 0.98268 1.20225 0.86955 0.93617 0.90768 1.86585 1.43705 1.60330 1.46831 1.83992 1.42482 1.34674 1.44832 0.92614 0.93174 0.88234 0.92316 0.93417 0.93146 0.89480 0.94036 0.91496 0.92338 0.89736 0.95631 0.94695 0.93022 0.90209 0.86912 0.81840 0.84033 0.91855 0.90627 0.77024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 6.08 37.16 0.23 -2.31 16 2 C -0.10 -1.60 0.77 -154.51 -0.12 -1.72 16 3 C -0.13 -1.89 8.27 37.16 0.31 -1.58 16 4 C -0.17 -2.88 6.28 37.16 0.23 -2.64 16 5 C 0.07 1.30 4.79 -3.83 -0.02 1.28 16 6 N -0.52 -11.09 4.51 -237.52 -1.07 -12.16 16 7 C 0.16 4.06 3.73 -4.98 -0.02 4.04 16 8 C -0.50 -13.87 8.49 -34.44 -0.29 -14.16 16 9 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 10 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 12 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.08 1.42 3.93 -4.97 -0.02 1.40 16 17 C 0.04 0.73 6.53 -35.62 -0.23 0.49 16 18 C -0.24 -3.86 8.73 -39.70 -0.35 -4.21 16 19 C -0.18 -2.71 10.81 -39.70 -0.43 -3.14 16 20 C -0.04 -0.64 6.95 -35.62 -0.25 -0.89 16 21 C 0.16 1.83 7.57 36.01 0.27 2.10 16 22 O -0.57 -6.37 13.64 -35.23 -0.48 -6.85 16 23 O -0.16 -3.09 10.65 5.74 0.06 -3.03 16 24 H 0.06 0.69 7.00 -51.93 -0.36 0.33 16 25 H 0.05 0.62 7.96 -51.93 -0.41 0.21 16 26 H 0.10 1.44 1.97 -51.93 -0.10 1.33 16 27 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.64 2.95 -51.93 -0.15 1.49 16 31 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 32 H 0.07 1.27 7.21 -51.92 -0.37 0.89 16 33 H 0.06 1.04 7.49 -51.93 -0.39 0.65 16 34 H 0.08 1.75 7.06 -51.93 -0.37 1.38 16 35 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 36 H 0.04 0.88 4.00 -51.93 -0.21 0.67 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.08 1.53 7.47 -51.93 -0.39 1.14 16 39 H 0.11 1.86 2.39 -51.93 -0.12 1.73 16 40 H 0.16 2.30 4.30 -52.49 -0.23 2.08 16 41 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.38 2.03 9.12 45.56 0.42 2.45 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -32.03 330.55 -7.15 -39.18 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.57 Total: 6.60 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -0.78 Total: -19.89 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.33 Total: -37.64 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.42 Total: -9.87 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.03 -7.15 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.693 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds