Wall clock time and date at job start Tue Mar 31 2020 07:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00086 * 2 1 4 4 C 1.52999 * 109.46707 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47086 * 67.08239 * 4 3 2 6 6 C 1.46898 * 110.99721 * 289.87259 * 5 4 3 7 7 C 1.53001 * 109.47282 * 299.04905 * 6 5 4 8 8 C 1.53011 * 109.47127 * 176.51699 * 7 6 5 9 9 C 1.50697 * 109.46902 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00001 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99700 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00065 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99701 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47297 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47224 * 120.00133 * 13 11 9 16 16 H 1.48503 * 109.47150 * 239.99970 * 13 11 9 17 17 C 1.46900 * 111.00389 * 53.82470 * 5 4 3 18 18 C 1.50705 * 109.46643 * 66.05129 * 17 5 4 19 19 C 1.34508 * 125.79068 * 90.00462 * 18 17 5 20 20 C 1.41382 * 106.84144 * 179.73382 * 19 18 17 21 21 C 1.34509 * 106.84230 * 359.97438 * 20 19 18 22 22 C 1.50702 * 125.79155 * 180.02562 * 21 20 19 23 23 O 1.34302 * 108.41885 * 0.02562 * 21 20 19 24 24 H 1.09005 * 109.46398 * 60.00325 * 1 2 3 25 25 H 1.08998 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47362 * 300.00908 * 1 2 3 27 27 H 1.09001 * 109.47026 * 59.99849 * 3 2 1 28 28 H 1.08999 * 109.46842 * 299.99502 * 3 2 1 29 29 H 1.08990 * 109.47718 * 307.07419 * 4 3 2 30 30 H 1.09001 * 109.46655 * 187.07528 * 4 3 2 31 31 H 1.09003 * 109.47075 * 59.04955 * 6 5 4 32 32 H 1.08998 * 109.47583 * 179.04401 * 6 5 4 33 33 H 1.08996 * 109.46754 * 296.51238 * 7 6 5 34 34 H 1.08998 * 109.47184 * 56.51810 * 7 6 5 35 35 H 1.09001 * 109.46754 * 299.99873 * 8 7 6 36 36 H 1.08998 * 109.46998 * 59.99998 * 8 7 6 37 37 H 0.97003 * 120.00309 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.47049 * 306.05346 * 17 5 4 39 39 H 1.09001 * 109.47236 * 186.04387 * 17 5 4 40 40 H 1.08002 * 126.58250 * 359.69469 * 19 18 17 41 41 H 1.07999 * 126.58097 * 179.97438 * 20 19 18 42 42 H 1.09006 * 109.46979 * 90.00227 * 22 21 20 43 43 H 1.09003 * 109.47245 * 209.99921 * 22 21 20 44 44 H 1.08989 * 109.47069 * 330.00204 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9815 0.6080 -1.2747 6 6 3.6043 -0.8084 -1.3726 7 6 4.2719 -1.5933 -0.2416 8 6 3.8107 -3.0514 -0.2913 9 6 4.4678 -3.8243 0.8230 10 1 5.1461 -3.3255 1.4993 11 6 4.2022 -5.1682 0.9798 12 7 3.3750 -5.7753 0.1571 13 14 5.0172 -6.1264 2.3607 14 1 5.8969 -5.2192 3.1407 15 1 3.9741 -6.6920 3.2535 16 1 5.8282 -7.2297 1.7860 17 6 3.4531 1.3732 -2.4119 18 6 4.0570 2.7540 -2.4121 19 6 5.1929 3.1157 -3.0352 20 6 5.3801 4.4933 -2.7784 21 6 4.3471 4.8912 -2.0142 22 6 4.1233 6.2871 -1.4922 23 8 3.5490 3.8335 -1.7953 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8485 0.5384 0.8207 30 1 3.9782 2.1725 0.1272 31 1 2.5215 -0.9025 -1.2903 32 1 3.9315 -1.2060 -2.3332 33 1 5.3546 -1.5505 -0.3596 34 1 3.9933 -1.1567 0.7175 35 1 2.7280 -3.0942 -0.1734 36 1 4.0894 -3.4881 -1.2504 37 1 3.1878 -6.7206 0.2676 38 1 2.3693 1.4506 -2.3256 39 1 3.7083 0.8650 -3.3418 40 1 5.8384 2.4764 -3.6190 41 1 6.1959 5.1083 -3.1285 42 1 3.5324 6.8538 -2.2119 43 1 3.5905 6.2388 -0.5425 44 1 5.0850 6.7784 -1.3447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125420429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:07 Heat of formation + Delta-G solvation = -31.345149 kcal Electronic energy + Delta-G solvation = -22575.111900 eV Core-core repulsion = 19301.511373 eV Total energy + Delta-G solvation = -3273.600526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.60482 -38.88063 -36.50991 -33.74796 -33.19934 -32.33534 -31.24303 -29.65152 -28.12037 -26.39513 -25.56590 -24.18807 -22.98844 -21.78261 -21.01468 -19.96758 -19.41639 -16.74605 -16.65462 -16.47389 -16.14404 -16.05209 -14.99997 -14.81148 -14.46746 -14.34706 -14.20820 -13.60300 -13.41020 -13.14562 -12.85290 -12.75583 -12.36154 -12.24135 -12.11713 -11.79532 -11.65607 -11.62390 -11.43432 -11.21753 -10.83706 -10.71449 -10.44280 -10.32792 -9.86374 -9.63210 -9.27036 -9.20116 -8.92466 -8.31694 -8.23659 -7.89022 -5.89868 -3.90560 1.67244 2.60959 2.85366 3.37060 3.44168 3.49177 3.89643 4.33223 4.55435 4.59676 4.82095 5.02928 5.03823 5.09385 5.19813 5.23754 5.32252 5.42429 5.44504 5.46142 5.47785 5.51680 5.55813 5.71863 5.81470 5.84062 5.96186 6.03121 6.12355 6.21207 6.29477 6.53731 6.63545 6.89012 6.91385 7.15221 7.23681 7.32144 7.44026 7.49833 7.82736 8.01600 8.13493 8.57048 9.17215 9.72477 11.21719 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.003564 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.651869 B = 7853.550187 C = 8402.731949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.021 3.979 4 C 0.051 3.949 5 N -0.527 5.527 6 C 0.046 3.954 7 C -0.099 4.099 8 C 0.025 3.975 9 C -0.513 4.513 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.285 1.285 17 C 0.126 3.874 18 C 0.002 3.998 19 C -0.193 4.193 20 C -0.211 4.211 21 C -0.025 4.025 22 C -0.071 4.071 23 O -0.178 6.178 24 H 0.034 0.966 25 H 0.088 0.912 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.258 0.742 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 22.665 -5.160 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.286 6.286 3 C -0.057 4.057 4 C -0.077 4.077 5 N -0.251 5.251 6 C -0.079 4.079 7 C -0.137 4.137 8 C -0.012 4.012 9 C -0.551 4.551 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.002 4.002 18 C -0.049 4.049 19 C -0.213 4.213 20 C -0.230 4.230 21 C -0.075 4.075 22 C -0.127 4.127 23 O -0.075 6.075 24 H 0.052 0.948 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.282 22.345 -5.046 23.021 hybrid contribution -0.467 -0.394 0.632 0.879 sum -2.749 21.951 -4.414 22.558 Atomic orbital electron populations 1.22747 0.82089 1.02938 0.99104 1.88184 1.18938 1.26579 1.94863 1.23337 0.96515 0.85780 1.00055 1.22387 0.90307 1.00944 0.94095 1.62335 1.58618 1.03701 1.00417 1.22572 1.00648 0.84339 1.00384 1.21605 0.98886 0.97502 0.95718 1.19027 0.96585 0.88913 0.96686 1.21320 1.26183 0.94025 1.13585 0.92784 1.25012 0.95400 0.97891 0.96256 1.69979 1.35860 1.10407 1.37491 0.86586 0.79308 0.80023 0.82378 1.19773 1.21158 1.21119 1.20618 0.97207 0.85635 0.96707 1.22353 0.96180 0.88066 0.98258 1.21533 0.98443 0.95587 1.05735 1.21550 1.01038 0.96003 1.04429 1.22352 0.92541 0.89712 1.02876 1.20255 1.03518 0.87503 1.01468 1.83946 1.46723 1.16804 1.59997 0.94778 0.89351 0.94527 0.93442 0.93247 0.88466 0.90102 0.91562 0.91951 0.93419 0.93147 0.96516 0.96972 0.93257 0.92920 0.87907 0.83494 0.83821 0.90441 0.90756 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.92 7.58 -35.23 -0.27 -6.19 16 3 C 0.02 0.30 5.69 37.16 0.21 0.51 16 4 C 0.05 0.76 5.47 -3.83 -0.02 0.74 16 5 N -0.53 -8.29 4.74 -236.08 -1.12 -9.41 16 6 C 0.05 0.84 4.55 -3.82 -0.02 0.83 16 7 C -0.10 -2.17 5.07 -26.73 -0.14 -2.31 16 8 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 9 C -0.51 -15.03 9.11 -34.44 -0.31 -15.34 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 13 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 C 0.13 1.68 5.14 -4.97 -0.03 1.66 16 18 C 0.00 0.02 5.89 -35.62 -0.21 -0.19 16 19 C -0.19 -2.43 10.81 -39.71 -0.43 -2.86 16 20 C -0.21 -2.37 10.81 -39.70 -0.43 -2.80 16 21 C -0.02 -0.27 7.32 -35.63 -0.26 -0.53 16 22 C -0.07 -0.49 10.42 36.01 0.38 -0.12 16 23 O -0.18 -2.32 10.26 5.71 0.06 -2.26 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.65 5.79 -51.93 -0.30 0.35 16 29 H 0.10 1.61 5.79 -51.93 -0.30 1.31 16 30 H 0.08 1.15 7.17 -51.93 -0.37 0.77 16 31 H 0.07 1.26 5.25 -51.93 -0.27 0.98 16 32 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.11 6.05 -51.93 -0.31 0.79 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.05 0.69 5.71 -51.93 -0.30 0.40 16 39 H 0.10 1.26 8.00 -51.93 -0.42 0.85 16 40 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.46 8.14 -51.94 -0.42 0.04 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -32.60 353.83 -7.96 -40.56 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.30 Total: -1.50 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.38 Total: -16.89 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.38 Total: -36.29 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.21 Total: -8.45 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.60 -7.96 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125420429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.219 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds