Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99658 * 90.00121 * 10 9 7 12 12 C 1.52998 * 109.47482 * 90.00117 * 11 10 9 13 13 C 1.53001 * 117.49921 * 243.74638 * 12 11 10 14 14 C 1.52994 * 117.50171 * 175.08577 * 12 11 10 15 15 C 1.34775 * 120.00337 * 269.99986 * 10 9 7 16 16 O 1.21285 * 119.99996 * 359.97438 * 15 10 9 17 17 C 1.50698 * 120.00318 * 180.02562 * 15 10 9 18 18 C 1.53001 * 109.47377 * 179.97438 * 17 15 10 19 19 O 1.42897 * 110.01384 * 64.29389 * 18 17 15 20 20 C 1.54267 * 110.02950 * 302.90566 * 18 17 15 21 21 C 1.54966 * 104.15872 * 217.13560 * 20 18 17 22 22 C 1.54891 * 102.77528 * 37.88934 * 21 20 18 23 23 C 1.53876 * 110.03309 * 185.68958 * 18 17 15 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.08998 * 109.46888 * 209.99779 * 11 10 9 28 28 H 1.08994 * 109.47490 * 329.99842 * 11 10 9 29 29 H 1.09006 * 115.54841 * 29.40861 * 12 11 10 30 30 H 1.09000 * 117.49465 * 359.97438 * 13 12 11 31 31 H 1.09000 * 117.49862 * 145.01490 * 13 12 11 32 32 H 1.09003 * 117.50161 * 214.97508 * 14 12 11 33 33 H 1.08995 * 117.50018 * 359.97438 * 14 12 11 34 34 H 1.09006 * 109.47054 * 299.99977 * 17 15 10 35 35 H 1.09003 * 109.47164 * 59.99309 * 17 15 10 36 36 H 0.96697 * 114.00804 * 300.70008 * 19 18 17 37 37 H 1.09003 * 110.48684 * 335.78054 * 20 18 17 38 38 H 1.08997 * 110.48727 * 98.42758 * 20 18 17 39 39 H 1.08999 * 110.71891 * 279.57511 * 21 20 18 40 40 H 1.08995 * 110.76181 * 156.22091 * 21 20 18 41 41 H 1.09004 * 110.48522 * 203.40462 * 22 21 20 42 42 H 1.08997 * 110.49164 * 80.76499 * 22 21 20 43 43 H 1.09001 * 110.02679 * 238.56882 * 23 18 17 44 44 H 1.09002 * 110.03220 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6788 -4.1694 1.2693 12 6 1.7482 -5.3006 1.7110 13 6 0.9694 -5.1068 3.0137 14 6 2.1406 -6.0910 2.9609 15 6 2.6408 -4.1250 -1.1666 16 8 2.2465 -3.6644 -2.2170 17 6 3.6197 -5.2708 -1.1666 18 6 3.9507 -5.6588 -2.6091 19 8 4.6197 -4.5796 -3.2646 20 6 2.6576 -6.0188 -3.3695 21 6 3.0735 -7.1947 -4.2891 22 6 4.0514 -7.9984 -3.3964 23 6 4.8368 -6.9167 -2.6264 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 3.6883 -4.5595 1.1390 28 1 2.6866 -3.3878 2.0289 29 1 1.2545 -5.8447 0.9058 30 1 1.1205 -4.1735 3.5562 31 1 -0.0364 -5.5237 3.0656 32 1 1.9048 -7.1551 2.9782 33 1 3.0620 -5.8054 3.4683 34 1 4.5323 -4.9690 -0.6525 35 1 3.1789 -6.1252 -0.6529 36 1 4.1074 -3.7601 -3.2960 37 1 1.8812 -6.3355 -2.6731 38 1 2.3159 -5.1713 -3.9636 39 1 3.5793 -6.8261 -5.1815 40 1 2.2080 -7.8007 -4.5567 41 1 4.7259 -8.5951 -4.0105 42 1 3.5005 -8.6352 -2.7042 43 1 5.7768 -6.7042 -3.1357 44 1 5.0313 -7.2505 -1.6072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155802867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = -79.646562 kcal Electronic energy + Delta-G solvation = -23306.344274 eV Core-core repulsion = 20030.649242 eV Total energy + Delta-G solvation = -3275.695033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97727 -38.20407 -37.03352 -34.64194 -34.26120 -32.61606 -30.65165 -28.64742 -27.89204 -26.31268 -25.17348 -22.60551 -22.21190 -20.86471 -20.71659 -19.62039 -18.50819 -16.57513 -16.49749 -16.26582 -15.70579 -15.33670 -15.01379 -14.75920 -14.57630 -14.10055 -13.82609 -13.34221 -12.75442 -12.70338 -12.37328 -12.23163 -12.13593 -11.69840 -11.46602 -11.39361 -11.24989 -11.22095 -11.09124 -10.92951 -10.85005 -10.65902 -10.54863 -10.40276 -10.28854 -10.14600 -9.76817 -9.64288 -9.52190 -8.86648 -8.44064 -7.71379 -6.05387 -4.10271 3.30997 3.33713 3.35843 3.40575 3.76274 4.02418 4.41738 4.44891 4.68830 4.72906 4.90158 5.00358 5.04494 5.07530 5.23998 5.28399 5.31976 5.45570 5.57932 5.60128 5.66262 5.69898 5.71116 5.79005 5.87338 5.92244 5.93172 5.98916 6.04538 6.13760 6.17260 6.23876 6.24750 6.42543 6.43785 6.61112 7.05983 7.42739 7.51452 7.90651 8.10313 8.22249 8.38975 8.87702 9.04917 9.54921 11.02583 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.005777 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.691008 B = 4846.027488 C = 6217.329677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.247 3.753 10 N -0.591 5.591 11 C 0.141 3.859 12 C -0.167 4.167 13 C -0.174 4.174 14 C -0.181 4.181 15 C 0.508 3.492 16 O -0.544 6.544 17 C -0.168 4.168 18 C 0.149 3.851 19 O -0.566 6.566 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.113 4.113 24 H 0.264 0.736 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.389 0.611 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 -15.807 1.254 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.128 3.872 10 N -0.321 5.321 11 C 0.017 3.983 12 C -0.186 4.186 13 C -0.211 4.211 14 C -0.219 4.219 15 C 0.295 3.705 16 O -0.424 6.424 17 C -0.209 4.209 18 C 0.108 3.892 19 O -0.376 6.376 20 C -0.175 4.175 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.363 -15.838 0.651 17.080 hybrid contribution -0.102 1.383 0.372 1.435 sum 6.261 -14.455 1.023 15.786 Atomic orbital electron populations 1.69923 1.05984 1.27092 1.50309 1.24919 0.94853 0.99155 0.95052 0.86579 0.79530 0.82787 0.78638 1.20157 1.21195 1.20293 1.21386 0.93255 0.90690 1.51258 0.92583 1.19270 0.87446 0.82057 0.98405 1.48207 1.45404 1.34554 1.03951 1.21036 0.95380 0.94346 0.87583 1.22881 1.03088 1.00784 0.91871 1.23013 0.96155 1.01102 1.00839 1.22934 0.99751 0.97255 1.01941 1.20337 0.82054 0.83862 0.84263 1.90599 1.58896 1.62146 1.30715 1.22586 1.00130 0.98691 0.99463 1.21451 0.91531 0.87259 0.88960 1.86341 1.47800 1.23654 1.79827 1.23011 0.96918 0.98795 0.98748 1.22528 0.98560 0.96879 0.98361 1.22346 0.98042 0.97236 0.98401 1.22162 0.99155 0.92954 1.00808 0.92684 0.94993 0.93935 0.91163 0.89799 0.88050 0.88427 0.89146 0.89154 0.88822 0.88963 0.88834 0.75918 0.91676 0.89666 0.91467 0.91927 0.91743 0.91706 0.90513 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 10 N -0.59 -12.02 2.46 -175.06 -0.43 -12.45 16 11 C 0.14 2.24 5.49 -4.04 -0.02 2.22 16 12 C -0.17 -2.28 5.94 -90.62 -0.54 -2.81 16 13 C -0.17 -2.23 10.18 -26.69 -0.27 -2.50 16 14 C -0.18 -1.96 10.25 -26.70 -0.27 -2.23 16 15 C 0.51 9.96 7.14 -10.99 -0.08 9.88 16 16 O -0.54 -12.48 12.09 -9.14 -0.11 -12.59 16 17 C -0.17 -2.49 3.18 -27.88 -0.09 -2.58 16 18 C 0.15 2.21 0.98 -89.50 -0.09 2.12 16 19 O -0.57 -9.76 12.89 -49.93 -0.64 -10.41 16 20 C -0.14 -2.04 4.65 -25.03 -0.12 -2.15 16 21 C -0.13 -1.51 6.91 -24.70 -0.17 -1.68 16 22 C -0.12 -1.28 6.83 -25.07 -0.17 -1.46 16 23 C -0.11 -1.35 6.27 -25.62 -0.16 -1.51 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 27 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 28 H 0.08 1.41 7.80 -51.93 -0.41 1.01 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.29 7.40 -51.93 -0.38 0.90 16 35 H 0.09 1.18 8.03 -51.93 -0.42 0.77 16 36 H 0.39 7.14 6.96 45.56 0.32 7.46 16 37 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 38 H 0.08 1.47 7.17 -51.93 -0.37 1.10 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.95 7.95 -51.93 -0.41 0.53 16 44 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -30.91 351.42 -9.56 -40.47 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.96 Total: 8.34 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.43 Total: -9.77 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.31 Total: -38.07 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.75 Total: -23.00 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.91 -9.56 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155802867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.174 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds