Wall clock time and date at job start Tue Mar 31 2020 08:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 C 1.52991 * 109.47001 * 120.00556 * 2 1 3 5 5 C 1.53008 * 109.46992 * 174.99778 * 4 2 1 6 6 N 1.46497 * 109.47048 * 179.97438 * 5 4 2 7 7 C 1.46508 * 120.00194 * 265.08745 * 6 5 4 8 8 C 1.50697 * 109.47022 * 262.27056 * 7 6 5 9 9 H 1.08004 * 119.99877 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99870 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00232 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47160 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47275 * 119.99987 * 12 10 8 15 15 H 1.48501 * 109.46793 * 239.99975 * 12 10 8 16 16 C 1.34773 * 120.00284 * 85.08893 * 6 5 4 17 17 O 1.21597 * 119.99907 * 2.71431 * 16 6 5 18 18 C 1.47491 * 120.00490 * 182.71778 * 16 6 5 19 19 C 1.32398 * 118.48071 * 173.27681 * 18 16 6 20 20 C 1.50465 * 122.29179 * 180.38486 * 19 18 16 21 21 C 1.53237 * 109.45046 * 342.43482 * 20 19 18 22 22 C 1.53474 * 108.28000 * 47.13749 * 21 20 19 23 23 O 1.35499 * 118.47802 * 353.25641 * 18 16 6 24 24 H 1.09002 * 109.46864 * 299.99646 * 1 2 3 25 25 H 1.09002 * 109.47233 * 59.99596 * 1 2 3 26 26 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46864 * 240.00353 * 2 1 3 28 28 H 1.08998 * 109.46989 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47417 * 300.00291 * 3 2 1 30 30 H 1.09002 * 109.46983 * 60.00426 * 3 2 1 31 31 H 1.08993 * 109.47750 * 54.99977 * 4 2 1 32 32 H 1.09003 * 109.47494 * 294.99473 * 4 2 1 33 33 H 1.08998 * 109.46625 * 60.00033 * 5 4 2 34 34 H 1.08993 * 109.46841 * 299.99629 * 5 4 2 35 35 H 1.09004 * 109.47029 * 22.26655 * 7 6 5 36 36 H 1.08992 * 109.47133 * 142.27005 * 7 6 5 37 37 H 0.97006 * 120.00092 * 179.97438 * 11 10 8 38 38 H 1.07996 * 118.85724 * 0.35827 * 19 18 16 39 39 H 1.08991 * 109.47785 * 222.44143 * 20 19 18 40 40 H 1.09007 * 109.47353 * 102.42196 * 20 19 18 41 41 H 1.08996 * 109.71171 * 166.84431 * 21 20 19 42 42 H 1.09001 * 109.70770 * 287.43311 * 21 20 19 43 43 H 1.09004 * 109.69635 * 56.77044 * 22 21 20 44 44 H 1.08999 * 109.69716 * 177.36128 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.8312 1.1878 6 7 4.0532 -1.5213 2.3842 7 6 4.5034 -0.7475 3.5439 8 6 6.0049 -0.6234 3.5127 9 1 6.5676 -1.0753 2.7092 10 6 6.6603 0.0680 4.5094 11 7 5.9751 0.6196 5.4870 12 14 8.5215 0.2225 4.4705 13 1 9.0517 -0.4809 3.2750 14 1 8.8979 1.6576 4.4084 15 1 9.0945 -0.3869 5.6975 16 6 4.0885 -2.8682 2.4180 17 8 3.7616 -3.5097 1.4381 18 6 4.5233 -3.5640 3.6436 19 6 4.4188 -4.8830 3.6916 20 6 4.8286 -5.6783 4.9014 21 6 5.7366 -4.8226 5.7910 22 6 5.0868 -3.4421 5.9555 23 8 5.0117 -2.8239 4.6681 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7198 1.2950 32 1 1.7517 -0.1585 2.1369 33 1 3.9994 0.1674 1.1420 34 1 3.8531 -1.3941 0.3001 35 1 4.0560 0.2460 3.5136 36 1 4.1997 -1.2550 4.4594 37 1 6.4362 1.1058 6.1885 38 1 4.0253 -5.4063 2.8327 39 1 5.3675 -6.5709 4.5840 40 1 3.9407 -5.9700 5.4624 41 1 5.8468 -5.2957 6.7668 42 1 6.7148 -4.7149 5.3221 43 1 4.0836 -3.5549 6.3667 44 1 5.6913 -2.8287 6.6237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:46 Heat of formation + Delta-G solvation = -70.471047 kcal Electronic energy + Delta-G solvation = -23463.297722 eV Core-core repulsion = 20188.000569 eV Total energy + Delta-G solvation = -3275.297153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97993 -38.35137 -36.53210 -34.85084 -33.28255 -32.42160 -31.07474 -29.12558 -27.05741 -26.80639 -25.35495 -24.02710 -22.96204 -22.37153 -19.84511 -19.43376 -18.11886 -16.80340 -16.21389 -16.03409 -15.24977 -15.06381 -14.78245 -14.45259 -14.14320 -13.97026 -13.61951 -13.38967 -13.25518 -12.74209 -12.52541 -12.44494 -12.22861 -12.09574 -11.99202 -11.63700 -11.23051 -11.09569 -10.82451 -10.81624 -10.74671 -10.56557 -10.46548 -10.27959 -10.19252 -10.11162 -9.78611 -9.55919 -9.14105 -8.38563 -7.96463 -7.47879 -6.02029 -4.02821 2.08350 3.27997 3.36496 3.41976 3.73876 3.97162 4.23039 4.46938 5.05265 5.09064 5.12109 5.15988 5.20481 5.26163 5.33244 5.51190 5.65873 5.69418 5.74103 5.85625 5.88896 5.90336 5.91340 6.00097 6.02777 6.11553 6.16441 6.22010 6.26236 6.35913 6.40972 6.41409 6.57630 6.65345 6.69594 6.82905 6.88028 7.50231 7.63528 7.91383 8.11859 8.25488 8.37045 8.91025 9.03967 9.59281 11.05897 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.007008 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.077043 B = 3994.741203 C = 5679.678468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.581 5.581 7 C 0.230 3.770 8 C -0.505 4.505 9 H 0.054 0.946 10 C 0.067 3.933 11 N -0.895 5.895 12 Si 0.888 3.112 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.562 3.438 17 O -0.565 6.565 18 C 0.061 3.939 19 C -0.238 4.238 20 C -0.075 4.075 21 C -0.161 4.161 22 C 0.051 3.949 23 O -0.246 6.246 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.260 0.740 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -4.691 -2.094 8.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.309 5.309 7 C 0.111 3.889 8 C -0.544 4.544 9 H 0.073 0.927 10 C -0.135 4.135 11 N -0.535 5.535 12 Si 0.716 3.284 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.211 1.211 16 C 0.351 3.649 17 O -0.448 6.448 18 C 0.012 3.988 19 C -0.260 4.260 20 C -0.112 4.112 21 C -0.199 4.199 22 C -0.024 4.024 23 O -0.158 6.158 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.335 -4.630 -2.424 8.212 hybrid contribution 1.173 -0.048 0.301 1.212 sum -5.161 -4.678 -2.123 7.282 Atomic orbital electron populations 1.21822 0.95585 1.01451 1.01331 1.21044 0.95375 0.96349 0.98468 1.21907 1.01636 0.95829 1.01318 1.21997 0.96402 1.00566 0.97659 1.21429 0.93078 0.97689 0.88359 1.48293 1.59823 1.05226 1.17563 1.19899 0.95139 0.90928 0.82947 1.21351 0.91498 1.32874 1.08676 0.92736 1.24769 0.97786 0.95618 0.95279 1.69934 1.35105 1.36023 1.12461 0.86603 0.86249 0.77600 0.77939 1.19939 1.21181 1.21073 1.17954 0.78040 0.82592 0.86358 1.90698 1.52325 1.66715 1.35063 1.20480 0.97366 0.91087 0.89853 1.22756 1.08420 0.93484 1.01291 1.20336 0.98954 0.97741 0.94207 1.22245 1.00171 0.97003 1.00438 1.22956 1.00167 0.93702 0.85617 1.87005 1.77570 1.36012 1.15258 0.92799 0.93067 0.92905 0.91304 0.92091 0.93226 0.92616 0.91937 0.91780 0.90085 0.91287 0.95135 0.91241 0.93078 0.85493 0.90838 0.91295 0.90859 0.90652 0.92842 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.32 16 2 C -0.09 -1.23 2.92 -90.62 -0.26 -1.50 16 3 C -0.15 -1.87 8.95 37.16 0.33 -1.54 16 4 C -0.13 -2.06 4.97 -26.73 -0.13 -2.19 16 5 C 0.12 2.21 5.10 -4.04 -0.02 2.19 16 6 N -0.58 -12.79 2.49 -176.31 -0.44 -13.23 16 7 C 0.23 5.58 4.75 -5.19 -0.02 5.55 16 8 C -0.50 -13.38 7.87 -34.44 -0.27 -13.66 16 9 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 11 N -0.90 -24.53 13.29 55.43 0.74 -23.79 16 12 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.56 12.63 7.50 -12.49 -0.09 12.53 16 17 O -0.57 -13.23 15.70 5.28 0.08 -13.15 16 18 C 0.06 1.27 6.41 -37.74 -0.24 1.03 16 19 C -0.24 -4.27 9.54 -36.35 -0.35 -4.62 16 20 C -0.08 -1.07 6.23 -27.87 -0.17 -1.24 16 21 C -0.16 -2.33 6.23 -26.36 -0.16 -2.49 16 22 C 0.05 0.88 7.08 37.40 0.26 1.14 16 23 O -0.25 -5.28 4.98 -18.19 -0.09 -5.37 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.50 6.45 -51.93 -0.34 1.16 16 34 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 35 H 0.03 0.78 8.01 -51.93 -0.42 0.36 16 36 H 0.07 1.77 5.33 -52.16 -0.28 1.49 16 37 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.13 2.30 7.30 -52.49 -0.38 1.92 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -29.07 350.81 -7.95 -37.02 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.61 Total: 1.69 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.89 Total: -4.43 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.30 Total: -37.02 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.01 Total: -18.52 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.07 -7.95 -37.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.452 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds