Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00248 * 2 1 4 4 H 1.48503 * 109.47188 * 270.00239 * 3 2 1 5 5 H 1.48507 * 109.47055 * 30.00118 * 3 2 1 6 6 H 1.48501 * 109.47519 * 149.99807 * 3 2 1 7 7 C 1.37879 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47272 * 184.66550 * 9 7 2 11 11 C 1.46904 * 111.00097 * 71.28018 * 10 9 7 12 12 C 1.52998 * 109.46982 * 190.00239 * 11 10 9 13 13 C 1.52994 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47438 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47438 * 179.97438 * 14 13 12 16 16 C 1.53007 * 109.47216 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47124 * 180.02562 * 16 15 14 18 18 C 1.46898 * 111.00163 * 195.23574 * 10 9 7 19 19 C 1.50705 * 109.46857 * 75.57537 * 18 10 9 20 20 C 1.34513 * 125.78802 * 90.00306 * 19 18 10 21 21 C 1.41385 * 106.83918 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.83866 * 0.02562 * 21 20 19 23 23 O 1.34298 * 108.42387 * 359.73144 * 22 21 20 24 24 H 0.96991 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47275 * 64.65718 * 9 7 2 26 26 H 1.09000 * 109.46871 * 304.66185 * 9 7 2 27 27 H 1.09000 * 109.46778 * 310.00052 * 11 10 9 28 28 H 1.08993 * 109.46965 * 70.00038 * 11 10 9 29 29 H 1.08993 * 109.47187 * 300.00210 * 12 11 10 30 30 H 1.09005 * 109.47045 * 60.00096 * 12 11 10 31 31 H 1.09001 * 109.47562 * 300.00173 * 13 12 11 32 32 H 1.09005 * 109.47547 * 59.99830 * 13 12 11 33 33 H 1.09006 * 109.47099 * 300.00226 * 14 13 12 34 34 H 1.09003 * 109.47549 * 59.99895 * 14 13 12 35 35 H 1.09001 * 109.47562 * 299.99980 * 15 14 13 36 36 H 1.09005 * 109.47096 * 59.99925 * 15 14 13 37 37 H 1.08995 * 109.46938 * 299.99926 * 16 15 14 38 38 H 1.08995 * 109.46720 * 60.00130 * 16 15 14 39 39 H 0.96703 * 114.00330 * 180.02562 * 17 16 15 40 40 H 1.08997 * 109.47017 * 315.57469 * 18 10 9 41 41 H 1.08998 * 109.47140 * 195.57625 * 18 10 9 42 42 H 1.07997 * 126.57998 * 0.02978 * 20 19 18 43 43 H 1.07997 * 126.57946 * 179.97438 * 21 20 19 44 44 H 1.08000 * 125.78506 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2016 -3.6134 0.1138 11 6 2.7844 -3.6734 1.4610 12 6 3.9409 -4.6751 1.4722 13 6 4.5474 -4.7381 2.8753 14 6 5.7043 -5.7393 2.8865 15 6 6.3113 -5.8018 4.2895 16 6 7.4677 -6.8036 4.3007 17 8 8.0343 -6.8623 5.6113 18 6 1.5633 -4.8881 -0.2409 19 6 1.4093 -4.9733 -1.7376 20 6 2.3104 -5.4888 -2.5930 21 6 1.7604 -5.3668 -3.8898 22 6 0.5565 -4.7837 -3.7492 23 8 0.3466 -4.5527 -2.4430 24 1 -0.4849 0.8400 0.0004 25 1 0.6888 -2.5941 -0.9284 26 1 0.5629 -2.5214 0.8456 27 1 3.1552 -2.6873 1.7406 28 1 2.0223 -3.9903 2.1727 29 1 3.5701 -5.6612 1.1924 30 1 4.7031 -4.3581 0.7603 31 1 4.9181 -3.7521 3.1556 32 1 3.7851 -5.0553 3.5869 33 1 5.3340 -6.7255 2.6061 34 1 6.4666 -5.4217 2.1750 35 1 6.6817 -4.8156 4.5694 36 1 5.5492 -6.1192 5.0013 37 1 7.0970 -7.7896 4.0210 38 1 8.2299 -6.4865 3.5889 39 1 8.7749 -7.4789 5.6924 40 1 0.5817 -4.9461 0.2294 41 1 2.1828 -5.7142 0.1083 42 1 3.2694 -5.9149 -2.3381 43 1 2.2194 -5.6808 -4.8156 44 1 -0.1277 -4.5462 -4.5505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175777722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = -55.301600 kcal Electronic energy + Delta-G solvation = -21748.731399 eV Core-core repulsion = 18474.092043 eV Total energy + Delta-G solvation = -3274.639356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -42.01312 -37.69132 -37.14054 -35.17916 -32.72889 -32.44226 -31.65577 -29.92177 -27.65175 -26.53122 -24.53849 -23.14784 -21.46475 -21.17690 -20.85735 -20.46652 -19.51177 -17.51730 -16.93566 -16.37286 -16.15499 -15.57492 -15.11329 -14.76177 -14.45261 -14.29905 -13.94597 -13.81082 -13.35174 -12.69637 -12.56761 -12.33161 -12.26063 -12.13292 -11.83708 -11.79102 -11.45629 -11.32495 -11.16388 -10.85787 -10.82467 -10.72831 -10.59897 -10.24656 -10.21053 -10.07868 -9.76411 -9.43831 -9.19158 -8.39893 -7.97237 -7.31195 -5.99164 -4.00444 2.25208 3.09061 3.33965 3.39725 3.43327 3.54264 3.94354 4.45056 4.76354 4.82783 4.94986 5.11274 5.14476 5.19458 5.34576 5.35930 5.39364 5.45923 5.47638 5.53050 5.71721 5.76572 5.84429 5.85950 5.95134 6.04926 6.11241 6.18280 6.23152 6.27132 6.37756 6.41958 6.58833 6.67804 6.77580 6.98041 7.28596 7.34409 7.34833 7.68419 7.82760 8.11041 8.17330 8.52989 9.07317 9.63267 11.11488 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010234 B = 0.004266 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.292732 B = 6562.149646 C = 8802.671595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.191 3.809 10 N -0.532 5.532 11 C 0.065 3.935 12 C -0.117 4.117 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.122 4.122 16 C 0.074 3.926 17 O -0.577 6.577 18 C 0.125 3.875 19 C 0.024 3.976 20 C -0.211 4.211 21 C -0.219 4.219 22 C -0.050 4.050 23 O -0.170 6.170 24 H 0.261 0.739 25 H 0.032 0.968 26 H -0.004 1.004 27 H 0.087 0.913 28 H 0.021 0.979 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.377 0.623 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 -15.051 2.131 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.257 5.257 11 C -0.063 4.063 12 C -0.155 4.155 13 C -0.156 4.156 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.004 4.004 17 O -0.383 6.383 18 C -0.004 4.004 19 C -0.027 4.027 20 C -0.231 4.231 21 C -0.238 4.238 22 C -0.118 4.118 23 O -0.065 6.065 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.014 0.986 27 H 0.106 0.894 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.224 0.776 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.944 -14.248 2.055 16.948 hybrid contribution 0.308 0.384 0.036 0.493 sum 9.251 -13.864 2.091 16.798 Atomic orbital electron populations 1.69968 1.06035 1.26676 1.51101 1.24988 0.94846 0.99246 0.95546 0.86522 0.79725 0.83198 0.78105 1.20698 1.21340 1.19827 1.21132 0.93500 0.89797 1.49857 0.91865 1.19811 0.89813 0.87267 0.96527 1.62127 1.36072 1.01949 1.25552 1.21994 0.94910 1.00279 0.89125 1.21675 0.98576 0.99072 0.96165 1.21539 0.96998 0.99292 0.97735 1.21503 0.98178 0.99957 0.95618 1.21564 0.96794 0.99455 0.98110 1.22261 0.95553 0.98769 0.83783 1.86492 1.52810 1.67546 1.31418 1.20548 0.98625 0.95351 0.85832 1.22427 0.86412 0.99090 0.94776 1.21379 1.01044 1.08519 0.92166 1.21706 0.96693 1.06910 0.98498 1.23877 0.99657 1.04386 0.83874 1.84087 1.40126 1.64232 1.18045 0.92986 0.94982 0.98623 0.89440 0.96104 0.92722 0.91269 0.91653 0.92165 0.92037 0.91789 0.91200 0.91346 0.93783 0.93691 0.77638 0.94048 0.88890 0.84098 0.84163 0.78848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -14.33 8.37 -34.44 -0.29 -14.62 16 8 H 0.06 1.78 7.68 -52.49 -0.40 1.38 16 9 C 0.19 5.04 4.55 -4.97 -0.02 5.02 16 10 N -0.53 -11.36 4.38 -237.52 -1.04 -12.40 16 11 C 0.06 1.19 4.81 -3.82 -0.02 1.18 16 12 C -0.12 -1.66 5.19 -26.73 -0.14 -1.80 16 13 C -0.12 -1.41 5.21 -26.74 -0.14 -1.55 16 14 C -0.11 -1.15 5.21 -26.74 -0.14 -1.29 16 15 C -0.12 -1.21 5.58 -26.73 -0.15 -1.36 16 16 C 0.07 0.64 7.05 37.16 0.26 0.90 16 17 O -0.58 -5.45 13.66 -35.23 -0.48 -5.93 16 18 C 0.12 2.28 5.38 -4.97 -0.03 2.25 16 19 C 0.02 0.46 6.23 -35.62 -0.22 0.24 16 20 C -0.21 -3.56 10.81 -39.70 -0.43 -3.99 16 21 C -0.22 -3.39 10.91 -39.70 -0.43 -3.82 16 22 C -0.05 -0.80 12.09 29.42 0.36 -0.45 16 23 O -0.17 -3.39 9.99 5.72 0.06 -3.33 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.93 6.81 -51.93 -0.35 0.57 16 26 H 0.00 -0.12 8.06 -51.93 -0.42 -0.53 16 27 H 0.09 1.80 7.15 -51.93 -0.37 1.43 16 28 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.05 0.71 6.25 -51.93 -0.32 0.39 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 1.73 9.12 45.56 0.42 2.14 16 40 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 41 H 0.09 1.40 5.88 -51.93 -0.31 1.10 16 42 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.19 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -33.13 361.86 -8.59 -41.72 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.81 Total: 1.74 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.49 Total: -17.82 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.30 Total: -38.77 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.42 Total: -9.26 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.13 -8.59 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175777722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.582 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds