Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46922 * 299.99859 * 3 2 1 6 6 H 1.48496 * 109.46967 * 59.99717 * 3 2 1 7 7 C 1.37878 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99787 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00164 * 270.00149 * 10 9 7 12 12 C 1.53004 * 109.47047 * 270.00283 * 11 10 9 13 13 C 1.52999 * 117.49662 * 243.62155 * 12 11 10 14 14 C 1.52998 * 117.49905 * 174.99854 * 12 11 10 15 15 C 1.34778 * 119.99832 * 90.00450 * 10 9 7 16 16 O 1.21279 * 120.00086 * 359.97438 * 15 10 9 17 17 C 1.50695 * 119.99868 * 180.02562 * 15 10 9 18 18 C 1.53004 * 109.47361 * 179.97438 * 17 15 10 19 19 C 1.52995 * 109.47255 * 179.97438 * 18 17 15 20 20 H 1.08999 * 110.83239 * 308.64769 * 19 18 17 21 21 C 1.54813 * 110.90744 * 184.99787 * 19 18 17 22 22 C 1.54098 * 104.30472 * 220.98959 * 21 19 18 23 23 O 1.43744 * 107.29564 * 357.90152 * 22 21 19 24 24 C 1.44373 * 106.97248 * 26.51652 * 23 22 21 25 25 H 0.96999 * 120.00084 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46904 * 59.99976 * 9 7 2 27 27 H 1.08998 * 109.47113 * 300.00349 * 9 7 2 28 28 H 1.09002 * 109.47265 * 29.99556 * 11 10 9 29 29 H 1.08996 * 109.47452 * 150.00126 * 11 10 9 30 30 H 1.08997 * 115.55092 * 29.32990 * 12 11 10 31 31 H 1.09000 * 117.50110 * 359.97438 * 13 12 11 32 32 H 1.09002 * 117.50154 * 145.02378 * 13 12 11 33 33 H 1.08999 * 117.50044 * 214.97539 * 14 12 11 34 34 H 1.09002 * 117.49843 * 359.97438 * 14 12 11 35 35 H 1.08999 * 109.47783 * 59.99559 * 17 15 10 36 36 H 1.09005 * 109.47164 * 299.99563 * 17 15 10 37 37 H 1.08993 * 109.46687 * 59.99595 * 18 17 15 38 38 H 1.09005 * 109.46798 * 300.00000 * 18 17 15 39 39 H 1.09002 * 110.48794 * 102.24504 * 21 19 18 40 40 H 1.09002 * 110.48657 * 339.72926 * 21 19 18 41 41 H 1.08999 * 109.88182 * 117.33024 * 22 21 19 42 42 H 1.08997 * 109.87763 * 238.47782 * 22 21 19 43 43 H 1.09002 * 110.62093 * 78.43762 * 24 23 22 44 44 H 1.09000 * 110.61773 * 201.43358 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.6790 -4.1706 -1.2655 12 6 1.7482 -5.3021 -1.7062 13 6 2.3402 -6.7103 -1.7932 14 6 2.0086 -5.9394 -3.0726 15 6 2.6408 -4.1239 1.1704 16 8 2.2470 -3.6618 2.2203 17 6 3.6205 -5.2689 1.1714 18 6 3.9523 -5.6550 2.6143 19 6 4.9464 -6.8180 2.6153 20 1 4.5934 -7.6303 1.9800 21 6 5.2100 -7.3182 4.0565 22 6 6.7272 -7.5851 4.0954 23 8 7.2433 -7.3097 2.7824 24 6 6.3577 -6.3445 2.1753 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5574 -0.8880 27 1 0.6246 -2.5563 0.8919 28 1 2.6867 -3.3896 -2.0259 29 1 3.6884 -4.5605 -1.1348 30 1 0.7113 -5.2108 -1.3829 31 1 3.3928 -6.8305 -1.5370 32 1 1.6927 -7.5458 -1.5271 33 1 1.1431 -6.2677 -3.6480 34 1 2.8428 -5.5522 -3.6577 35 1 4.5331 -4.9669 0.6575 36 1 3.1806 -6.1240 0.6581 37 1 3.0399 -5.9570 3.1285 38 1 4.3924 -4.7998 3.1272 39 1 4.6559 -8.2370 4.2487 40 1 4.9388 -6.5513 4.7821 41 1 7.2005 -6.9282 4.8251 42 1 6.9136 -8.6270 4.3559 43 1 6.5611 -5.3438 2.5567 44 1 6.4500 -6.3687 1.0895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175992726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = -74.314209 kcal Electronic energy + Delta-G solvation = -22567.591752 eV Core-core repulsion = 19292.127947 eV Total energy + Delta-G solvation = -3275.463805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73136 -39.03128 -37.18640 -34.70202 -34.14346 -32.53153 -30.91317 -28.87305 -27.65618 -26.14071 -24.43044 -22.82958 -22.30997 -21.89765 -20.65512 -20.38064 -18.32183 -16.74565 -16.56956 -16.45213 -15.67145 -15.55485 -15.27429 -14.97073 -14.64389 -14.22244 -14.17428 -13.63007 -13.05181 -12.95675 -12.72649 -12.43465 -12.08762 -11.89415 -11.66529 -11.52522 -11.42702 -11.26862 -11.20718 -10.96461 -10.85690 -10.73032 -10.58360 -10.49899 -10.33046 -10.08455 -9.82206 -9.79740 -9.59306 -8.84250 -8.43405 -7.65768 -6.04049 -4.08558 3.29574 3.36918 3.40133 3.47026 3.75327 3.84327 4.03831 4.41306 4.45126 4.63400 4.74528 4.88186 4.94588 5.02846 5.04504 5.14543 5.23854 5.30206 5.36719 5.40536 5.48431 5.54948 5.60786 5.66768 5.67589 5.70350 5.76831 5.84252 5.89543 5.95521 6.00421 6.09420 6.16820 6.25095 6.40611 6.45974 6.72221 7.08589 7.45777 7.56689 7.92820 8.24459 8.44994 8.91508 9.12812 9.56731 11.04086 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.004568 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.904962 B = 6128.611530 C = 7384.521192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.596 5.596 11 C 0.143 3.857 12 C -0.164 4.164 13 C -0.185 4.185 14 C -0.177 4.177 15 C 0.506 3.494 16 O -0.544 6.544 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.120 4.120 20 H 0.085 0.915 21 C -0.154 4.154 22 C 0.047 3.953 23 O -0.383 6.383 24 C 0.048 3.952 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.180 -16.296 -0.027 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.327 5.327 11 C 0.018 3.982 12 C -0.184 4.184 13 C -0.222 4.222 14 C -0.214 4.214 15 C 0.293 3.707 16 O -0.421 6.421 17 C -0.183 4.183 18 C -0.130 4.130 19 C -0.139 4.139 20 H 0.103 0.897 21 C -0.191 4.191 22 C -0.030 4.030 23 O -0.302 6.302 24 C -0.028 4.028 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.989 -15.988 0.441 18.347 hybrid contribution 0.145 1.032 -0.061 1.044 sum 9.134 -14.956 0.380 17.529 Atomic orbital electron populations 1.69941 1.05988 1.26852 1.50612 1.24932 0.94862 0.99192 0.95118 0.86462 0.80011 0.83477 0.77584 1.19818 1.20971 1.20900 1.21474 0.93353 0.90704 1.50817 0.92463 1.19270 0.87571 0.82236 0.98317 1.48194 1.45753 1.34704 1.04036 1.21001 0.95065 0.94570 0.87536 1.22943 1.01459 0.93879 1.00110 1.23046 1.01426 0.95273 1.02486 1.22895 1.03360 1.04420 0.90754 1.20358 0.82383 0.83885 0.84083 1.90661 1.58598 1.61835 1.31046 1.21773 0.99485 0.98322 0.98680 1.21293 0.98874 0.96851 0.96021 1.22828 0.95963 0.98806 0.96307 0.89670 1.23002 0.96138 1.02312 0.97674 1.23141 0.93209 1.00997 0.85659 1.88843 1.50598 1.61990 1.28755 1.23757 0.87722 0.92524 0.98830 0.92806 0.95051 0.93966 0.89589 0.91449 0.87452 0.88883 0.89221 0.89036 0.88756 0.89835 0.89296 0.90806 0.90892 0.90552 0.90249 0.92524 0.90161 0.91817 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 10 N -0.60 -12.33 2.46 -175.06 -0.43 -12.76 16 11 C 0.14 2.26 5.49 -4.04 -0.02 2.24 16 12 C -0.16 -2.24 5.95 -90.62 -0.54 -2.78 16 13 C -0.19 -1.98 9.18 -26.73 -0.25 -2.22 16 14 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 15 C 0.51 10.24 7.67 -10.99 -0.08 10.15 16 16 O -0.54 -13.47 15.56 5.56 0.09 -13.39 16 17 C -0.14 -1.99 4.15 -27.88 -0.12 -2.11 16 18 C -0.09 -1.20 3.90 -26.73 -0.10 -1.31 16 19 C -0.12 -1.25 3.10 -88.49 -0.27 -1.52 16 20 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.15 -1.43 6.59 -25.20 -0.17 -1.60 16 22 C 0.05 0.45 7.70 37.73 0.29 0.74 16 23 O -0.38 -4.62 11.52 -35.23 -0.41 -5.03 16 24 C 0.05 0.52 6.65 38.34 0.25 0.77 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 28 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 29 H 0.07 0.89 6.17 -51.93 -0.32 0.57 16 30 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 31 H 0.09 0.88 7.87 -51.93 -0.41 0.48 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.04 7.00 -51.93 -0.36 0.67 16 36 H 0.09 1.08 6.84 -51.93 -0.36 0.72 16 37 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.07 1.06 7.94 -51.93 -0.41 0.64 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -32.83 357.02 -9.06 -41.89 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.67 Total: -0.05 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.73 Total: -7.03 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.31 Total: -38.63 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.32 Total: -18.41 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.83 -9.06 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175992726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.423 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds