Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00223 * 2 1 4 4 H 1.48498 * 109.47356 * 239.99984 * 3 2 1 5 5 H 1.48496 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47126 * 119.99661 * 3 2 1 7 7 C 1.38956 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99702 * 199.54886 * 7 2 1 9 9 N 1.37091 * 120.00298 * 19.55183 * 7 2 1 10 10 C 1.34771 * 119.99920 * 42.32710 * 9 7 2 11 11 O 1.21300 * 120.00299 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00205 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.47331 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47251 * 180.02562 * 13 12 10 15 15 H 1.08999 * 110.80343 * 308.63487 * 14 13 12 16 16 C 1.54814 * 110.90970 * 185.00170 * 14 13 12 17 17 C 1.54101 * 104.18613 * 220.92200 * 16 14 13 18 18 O 1.43745 * 107.29467 * 357.96948 * 17 16 14 19 19 C 1.44380 * 106.97820 * 26.51462 * 18 17 16 20 20 C 1.46501 * 120.00115 * 222.33418 * 9 7 2 21 21 C 1.54265 * 110.48237 * 298.97537 * 20 9 7 22 22 C 1.53873 * 106.59479 * 142.29066 * 21 20 9 23 23 C 1.54260 * 106.64226 * 359.97384 * 22 21 20 24 24 C 1.54884 * 110.48522 * 53.74989 * 20 9 7 25 25 H 0.96997 * 119.99421 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47350 * 300.00122 * 12 10 9 27 27 H 1.09002 * 109.46708 * 60.00666 * 12 10 9 28 28 H 1.08999 * 109.47003 * 300.00618 * 13 12 10 29 29 H 1.09002 * 109.46804 * 60.00574 * 13 12 10 30 30 H 1.08994 * 110.48378 * 339.59729 * 16 14 13 31 31 H 1.08995 * 110.48307 * 102.11509 * 16 14 13 32 32 H 1.09001 * 109.87395 * 117.39475 * 17 16 14 33 33 H 1.08998 * 109.87599 * 238.54567 * 17 16 14 34 34 H 1.08998 * 110.61729 * 201.43710 * 19 18 17 35 35 H 1.09001 * 110.61469 * 78.43287 * 19 18 17 36 36 H 1.09005 * 110.53655 * 176.36517 * 20 9 7 37 37 H 1.08999 * 110.03547 * 23.00338 * 21 20 9 38 38 H 1.09001 * 110.06965 * 261.59349 * 21 20 9 39 39 H 1.09000 * 110.03202 * 119.28584 * 22 21 20 40 40 H 1.09008 * 110.03268 * 240.66304 * 22 21 20 41 41 H 1.08997 * 110.48890 * 95.09712 * 23 22 21 42 42 H 1.08998 * 110.48647 * 217.73805 * 23 22 21 43 43 H 1.09000 * 110.76161 * 321.69553 * 24 20 9 44 44 H 1.08997 * 110.75734 * 84.88435 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0422 -1.2302 0.3135 9 7 1.3827 -2.3566 -0.3963 10 6 0.5769 -2.3485 -1.4766 11 8 0.4061 -1.3209 -2.0981 12 6 -0.1110 -3.6163 -1.9131 13 6 -0.9590 -3.3347 -3.1552 14 6 -1.6578 -4.6217 -3.5980 15 1 -0.9420 -5.4383 -3.6920 16 6 -2.4260 -4.4049 -4.9246 17 6 -3.7489 -5.1694 -4.7242 18 8 -3.6911 -5.7916 -3.4296 19 6 -2.7997 -4.9960 -2.6190 20 6 1.5893 -3.5978 0.3541 21 6 3.0785 -3.9995 0.3335 22 6 3.3970 -4.5776 1.7235 23 6 2.0909 -4.5069 2.5413 24 6 1.2746 -3.3824 1.8553 25 1 -0.4849 0.8401 0.0004 26 1 0.6372 -4.3731 -2.1484 27 1 -0.7524 -3.9770 -1.1090 28 1 -1.7072 -2.5777 -2.9204 29 1 -0.3172 -2.9743 -3.9592 30 1 -2.6188 -3.3442 -5.0848 31 1 -1.8658 -4.8208 -5.7620 32 1 -4.5880 -4.4748 -4.7644 33 1 -3.8578 -5.9306 -5.4967 34 1 -2.4136 -5.5820 -1.7849 35 1 -3.3053 -4.1002 -2.2586 36 1 0.9724 -4.3986 -0.0540 37 1 3.6989 -3.1239 0.1422 38 1 3.2518 -4.7544 -0.4335 39 1 3.7241 -5.6133 1.6311 40 1 4.1726 -3.9831 2.2065 41 1 1.5551 -5.4545 2.4871 42 1 2.3037 -4.2467 3.5781 43 1 1.6168 -2.4014 2.1849 44 1 0.2085 -3.5027 2.0476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177420564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = -93.743607 kcal Electronic energy + Delta-G solvation = -23213.428162 eV Core-core repulsion = 19937.121835 eV Total energy + Delta-G solvation = -3276.306327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.44367 -38.69897 -36.76745 -34.21830 -33.16327 -31.58958 -30.45926 -28.33536 -28.06204 -26.77921 -25.20836 -23.40400 -22.09241 -20.23043 -19.97045 -19.77683 -18.91605 -16.56336 -16.25878 -15.98036 -15.42982 -15.27270 -14.92778 -14.50693 -14.24464 -14.04773 -13.43280 -13.37285 -12.80850 -12.71009 -12.62304 -12.23071 -11.74814 -11.48832 -11.43820 -11.18440 -11.03320 -10.78096 -10.72044 -10.70295 -10.58763 -10.48501 -10.45350 -10.39127 -10.19661 -10.07991 -9.94033 -9.70731 -9.61091 -8.66215 -7.93786 -6.99991 -6.04390 -3.76503 3.34239 3.41026 3.44759 4.00327 4.26900 4.43774 4.63210 4.82664 4.90889 5.04999 5.17147 5.22253 5.25247 5.36924 5.37799 5.48653 5.61439 5.71652 5.75387 5.81906 5.89417 5.90663 5.91579 6.03546 6.06150 6.11348 6.13150 6.20717 6.23381 6.23708 6.36734 6.42987 6.52763 6.60732 6.66243 6.78719 6.85909 6.91888 6.95494 7.19597 7.69682 8.34993 9.16038 9.27372 9.77472 10.40955 11.04809 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.005532 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.587700 B = 5059.816672 C = 6425.862354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.343 4.343 8 H 0.075 0.925 9 N -0.449 5.449 10 C 0.474 3.526 11 O -0.538 6.538 12 C -0.134 4.134 13 C -0.087 4.087 14 C -0.121 4.121 15 H 0.082 0.918 16 C -0.153 4.153 17 C 0.047 3.953 18 O -0.385 6.385 19 C 0.049 3.951 20 C 0.130 3.870 21 C -0.134 4.134 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.121 4.121 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 -11.059 -2.462 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.470 4.470 8 H 0.093 0.907 9 N -0.171 5.171 10 C 0.262 3.738 11 O -0.416 6.416 12 C -0.175 4.175 13 C -0.125 4.125 14 C -0.139 4.139 15 H 0.100 0.900 16 C -0.191 4.191 17 C -0.029 4.029 18 O -0.304 6.304 19 C -0.027 4.027 20 C 0.025 3.975 21 C -0.173 4.173 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.848 -10.583 -2.731 11.085 hybrid contribution 0.497 0.958 0.036 1.080 sum -1.351 -9.625 -2.696 10.086 Atomic orbital electron populations 1.69861 1.06477 1.27099 1.43019 1.25133 0.94665 0.99113 0.94765 0.86393 0.79405 0.82569 0.78320 1.20177 1.21385 1.20532 1.18740 0.94840 0.84538 1.48842 0.90697 1.43301 1.44117 1.06952 1.22735 1.19878 0.83335 0.89027 0.81596 1.90510 1.62695 1.33569 1.54798 1.21638 0.99173 0.98559 0.98137 1.21225 0.98978 0.94830 0.97435 1.22817 0.97422 0.99516 0.94191 0.89960 1.22999 0.96033 1.01598 0.98468 1.23122 0.97171 0.96618 0.86034 1.88825 1.67425 1.50956 1.23216 1.23717 0.89278 0.95484 0.94201 1.21881 0.94473 0.88736 0.92457 1.22472 0.98484 1.00542 0.95785 1.22041 0.97660 0.99660 0.96235 1.22330 0.96402 0.98859 0.98658 1.22708 0.98719 0.99370 0.95160 0.92830 0.91209 0.91036 0.91071 0.91278 0.90335 0.90716 0.92651 0.90321 0.88983 0.91768 0.91220 0.90576 0.93007 0.92874 0.92342 0.92500 0.92392 0.89530 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.37 11.66 55.50 0.65 -23.72 16 2 C 0.07 2.05 4.34 -17.47 -0.08 1.97 16 3 Si 0.91 21.95 29.60 -169.99 -5.03 16.92 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.34 -9.15 7.47 -14.93 -0.11 -9.26 16 8 H 0.08 1.95 6.86 -52.48 -0.36 1.59 16 9 N -0.45 -10.86 2.55 -105.97 -0.27 -11.13 16 10 C 0.47 11.68 6.97 -10.99 -0.08 11.61 16 11 O -0.54 -15.51 13.60 5.54 0.08 -15.44 16 12 C -0.13 -2.48 3.92 -27.88 -0.11 -2.58 16 13 C -0.09 -1.46 3.90 -26.73 -0.10 -1.57 16 14 C -0.12 -1.62 3.10 -88.61 -0.27 -1.89 16 15 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.15 -1.81 6.60 -25.20 -0.17 -1.97 16 17 C 0.05 0.55 7.70 37.73 0.29 0.84 16 18 O -0.39 -5.49 11.52 -35.23 -0.41 -5.89 16 19 C 0.05 0.67 6.63 38.22 0.25 0.93 16 20 C 0.13 2.50 3.16 -66.27 -0.21 2.29 16 21 C -0.13 -2.28 6.42 -25.61 -0.16 -2.45 16 22 C -0.12 -1.69 6.80 -25.62 -0.17 -1.87 16 23 C -0.12 -1.81 6.84 -25.03 -0.17 -1.98 16 24 C -0.12 -2.24 6.40 -24.70 -0.16 -2.40 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.07 1.14 7.87 -51.93 -0.41 0.73 16 27 H 0.07 1.24 7.32 -51.93 -0.38 0.86 16 28 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 29 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.91 7.93 -51.93 -0.41 0.50 16 36 H 0.07 1.21 5.89 -51.93 -0.31 0.91 16 37 H 0.08 1.46 6.56 -51.93 -0.34 1.12 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.85 7.11 -51.93 -0.37 1.48 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -31.71 341.77 -8.69 -40.40 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.60 Total: 2.04 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.25 Total: -8.33 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.38 Total: -34.85 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.33 Total: -21.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.71 -8.69 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177420564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.344 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds