Wall clock time and date at job start Tue Mar 31 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48502 * 109.47199 * 270.00142 * 3 2 1 5 5 H 1.48510 * 109.46771 * 30.00097 * 3 2 1 6 6 H 1.48494 * 109.47243 * 150.00043 * 3 2 1 7 7 C 1.38948 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00278 * 202.85485 * 7 2 1 9 9 N 1.37095 * 120.00207 * 22.84523 * 7 2 1 10 10 C 1.34780 * 119.99977 * 49.86291 * 9 7 2 11 11 O 1.21296 * 120.00490 * 185.43670 * 10 9 7 12 12 C 1.50702 * 119.99781 * 5.43741 * 10 9 7 13 13 C 1.52994 * 109.47244 * 173.34406 * 12 10 9 14 14 C 1.52998 * 109.47310 * 179.97438 * 13 12 10 15 15 H 1.09002 * 110.90978 * 57.13563 * 14 13 12 16 16 C 1.55314 * 110.84843 * 180.71391 * 14 13 12 17 17 C 1.54947 * 100.93945 * 152.32295 * 16 14 13 18 18 O 1.43645 * 105.13714 * 323.55879 * 17 16 14 19 19 C 1.43236 * 109.97475 * 24.42494 * 18 17 16 20 20 C 1.46501 * 120.00357 * 229.86408 * 9 7 2 21 21 C 1.54263 * 110.03551 * 57.90896 * 20 9 7 22 22 C 1.54959 * 104.16228 * 217.14191 * 21 20 9 23 23 C 1.54889 * 102.78081 * 37.87981 * 22 21 20 24 24 C 1.53877 * 110.03061 * 300.68782 * 20 9 7 25 25 H 0.97002 * 120.00208 * 2.76998 * 1 2 3 26 26 H 1.09000 * 109.46996 * 53.34227 * 12 10 9 27 27 H 1.09001 * 109.46980 * 293.34398 * 12 10 9 28 28 H 1.09000 * 109.47271 * 59.99989 * 13 12 10 29 29 H 1.09001 * 109.47126 * 299.99903 * 13 12 10 30 30 H 1.08993 * 111.12314 * 34.40721 * 16 14 13 31 31 H 1.09000 * 111.15892 * 270.25758 * 16 14 13 32 32 H 1.08994 * 110.30864 * 204.63977 * 17 16 14 33 33 H 1.09001 * 110.30572 * 82.47032 * 17 16 14 34 34 H 1.09001 * 109.82667 * 117.80204 * 19 18 17 35 35 H 1.09000 * 109.83168 * 238.77687 * 19 18 17 36 36 H 1.09004 * 110.01666 * 179.30364 * 20 9 7 37 37 H 1.09005 * 110.48301 * 335.78373 * 21 20 9 38 38 H 1.09002 * 110.48667 * 98.42563 * 21 20 9 39 39 H 1.09001 * 110.71562 * 279.57088 * 22 21 20 40 40 H 1.09001 * 110.92825 * 156.29707 * 22 21 20 41 41 H 1.08993 * 110.48804 * 203.40742 * 23 22 21 42 42 H 1.09003 * 110.59627 * 80.81940 * 23 22 21 43 43 H 1.09000 * 110.03425 * 238.56725 * 24 20 9 44 44 H 1.09001 * 110.03175 * 359.95678 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0252 -1.2403 0.3627 9 7 1.4041 -2.3439 -0.4620 10 6 0.7807 -2.3399 -1.6570 11 8 0.1619 -3.3173 -2.0216 12 6 0.8527 -1.1210 -2.5403 13 6 0.2106 -1.4331 -3.8934 14 6 0.2831 -0.1954 -4.7900 15 1 1.3142 0.1358 -4.9133 16 6 -0.3772 -0.4719 -6.1683 17 6 -0.8375 0.9534 -6.5651 18 8 -1.2531 1.5692 -5.3356 19 6 -0.5961 0.9424 -4.2279 20 6 1.4352 -3.5670 0.3438 21 6 0.8010 -3.3059 1.7255 22 6 1.6638 -4.1433 2.7031 23 6 3.0928 -3.9739 2.1300 24 6 2.8917 -3.9920 0.6006 25 1 -0.4850 0.8391 -0.0406 26 1 1.8956 -0.8410 -2.6889 27 1 0.3193 -0.2969 -2.0664 28 1 -0.8323 -1.7130 -3.7448 29 1 0.7440 -2.2571 -4.3673 30 1 -1.2279 -1.1458 -6.0683 31 1 0.3490 -0.8628 -6.8810 32 1 -1.6729 0.9006 -7.2631 33 1 -0.0099 1.5093 -7.0057 34 1 0.0279 1.6696 -3.7084 35 1 -1.3374 0.5325 -3.5420 36 1 0.8983 -4.3652 -0.1688 37 1 0.8583 -2.2470 1.9776 38 1 -0.2341 -3.6472 1.7408 39 1 1.3617 -5.1904 2.6840 40 1 1.6037 -3.7438 3.7155 41 1 3.7292 -4.8024 2.4409 42 1 3.5230 -3.0238 2.4470 43 1 3.0613 -4.9967 0.2136 44 1 3.5753 -3.2886 0.1251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177420580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:37 Heat of formation + Delta-G solvation = -102.460605 kcal Electronic energy + Delta-G solvation = -23443.670052 eV Core-core repulsion = 20166.985728 eV Total energy + Delta-G solvation = -3276.684324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.36382 -38.79473 -36.72768 -34.11506 -33.88452 -31.46607 -30.39167 -28.27468 -27.95397 -26.86685 -24.82576 -23.57568 -22.02986 -20.22220 -19.98850 -19.30766 -19.15694 -16.56640 -16.53270 -15.75024 -15.57935 -15.12841 -14.66777 -14.52831 -14.23097 -14.08839 -13.56467 -13.13898 -12.84820 -12.65813 -12.49627 -12.41687 -11.67816 -11.60641 -11.35030 -11.19461 -11.05736 -10.90194 -10.72045 -10.60827 -10.49181 -10.47008 -10.35819 -10.34307 -10.25769 -10.01206 -9.94542 -9.64216 -9.29628 -8.74996 -8.23031 -7.30990 -6.42423 -4.19129 3.09252 3.20396 3.20920 4.04254 4.09044 4.19348 4.65782 4.80393 4.87006 5.06786 5.12642 5.36030 5.38030 5.38122 5.49019 5.57081 5.71206 5.82078 5.88015 6.04825 6.07622 6.08391 6.18913 6.22371 6.30934 6.31839 6.33551 6.37538 6.43283 6.51069 6.54367 6.59049 6.72612 6.76776 6.93162 6.97786 7.11038 7.18487 7.23268 7.30676 7.44863 7.98230 8.67532 8.92624 9.63955 10.07338 10.60834 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019781 B = 0.005537 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.137052 B = 5055.438392 C = 5965.159233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.052 3.948 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.331 4.331 8 H 0.081 0.919 9 N -0.450 5.450 10 C 0.513 3.487 11 O -0.616 6.616 12 C -0.131 4.131 13 C -0.090 4.090 14 C -0.120 4.120 15 H 0.081 0.919 16 C -0.152 4.152 17 C 0.051 3.949 18 O -0.391 6.391 19 C 0.054 3.946 20 C 0.132 3.868 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.127 4.127 25 H 0.270 0.730 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -0.358 -4.504 5.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.155 4.155 3 Si 0.722 3.278 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.459 4.459 8 H 0.099 0.901 9 N -0.169 5.169 10 C 0.304 3.696 11 O -0.503 6.503 12 C -0.171 4.171 13 C -0.128 4.128 14 C -0.139 4.139 15 H 0.099 0.901 16 C -0.190 4.190 17 C -0.026 4.026 18 O -0.310 6.310 19 C -0.022 4.022 20 C 0.027 3.973 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.166 4.166 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.419 -0.549 -4.590 5.217 hybrid contribution 0.586 0.844 0.167 1.041 sum 3.004 0.295 -4.423 5.355 Atomic orbital electron populations 1.70087 1.06069 1.28042 1.44171 1.25478 0.94913 0.99793 0.95347 0.86419 0.80140 0.82337 0.78928 1.19804 1.20879 1.19263 1.19119 0.96864 0.84835 1.45088 0.90104 1.43446 1.50525 1.08922 1.14013 1.20288 0.79702 0.87868 0.81709 1.90478 1.46702 1.37619 1.75457 1.21701 1.01927 0.99618 0.93805 1.21302 1.02038 0.94868 0.94580 1.22778 0.99655 0.96695 0.94727 0.90065 1.23326 1.01268 0.97339 0.97065 1.23320 0.99182 0.92362 0.87699 1.88364 1.68087 1.59746 1.14821 1.23290 0.95742 0.94240 0.88950 1.21554 0.94108 0.89662 0.91951 1.22587 0.97324 1.01800 0.94154 1.22453 0.95814 0.99341 0.98481 1.22252 0.96593 1.00707 0.95836 1.22415 0.98331 1.00157 0.95693 0.91964 0.90856 0.87231 0.91501 0.92076 0.90227 0.90226 0.90256 0.92651 0.91567 0.90486 0.90525 0.89243 0.93124 0.92584 0.92452 0.93010 0.91717 0.93018 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.45 11.48 55.50 0.64 -20.81 16 2 C 0.05 1.23 3.50 -17.47 -0.06 1.17 16 3 Si 0.90 18.61 29.61 -169.99 -5.03 13.57 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.33 -7.94 6.88 -14.93 -0.10 -8.04 16 8 H 0.08 1.91 7.23 -52.49 -0.38 1.54 16 9 N -0.45 -10.88 2.38 -106.54 -0.25 -11.14 16 10 C 0.51 12.88 7.03 -10.98 -0.08 12.80 16 11 O -0.62 -16.75 15.34 5.54 0.09 -16.67 16 12 C -0.13 -2.85 3.88 -27.88 -0.11 -2.96 16 13 C -0.09 -1.68 3.92 -26.73 -0.10 -1.79 16 14 C -0.12 -1.88 3.03 -88.67 -0.27 -2.15 16 15 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.15 -1.99 6.62 -24.48 -0.16 -2.15 16 17 C 0.05 0.66 7.78 38.19 0.30 0.95 16 18 O -0.39 -6.48 11.36 -35.23 -0.40 -6.88 16 19 C 0.05 0.91 6.57 37.88 0.25 1.16 16 20 C 0.13 2.88 3.29 -66.81 -0.22 2.66 16 21 C -0.12 -2.47 6.42 -25.04 -0.16 -2.63 16 22 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 23 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 24 C -0.13 -2.36 6.24 -25.61 -0.16 -2.52 16 25 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 26 H 0.07 1.54 8.00 -51.93 -0.42 1.12 16 27 H 0.11 2.52 4.61 -51.93 -0.24 2.28 16 28 H 0.07 1.35 7.96 -51.93 -0.41 0.94 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.40 7.73 -51.93 -0.40 1.00 16 36 H 0.08 1.79 6.95 -51.93 -0.36 1.43 16 37 H 0.09 2.07 7.04 -51.93 -0.37 1.71 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.38 6.93 -51.93 -0.36 1.02 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -27.70 340.89 -8.61 -36.31 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.56 Total: 8.20 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.22 Total: -7.72 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.38 Total: -31.95 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.32 Total: -23.55 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.70 -8.61 -36.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177420580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.149 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds