Wall clock time and date at job start Tue Mar 31 2020 07:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46919 * 2 1 4 4 C 1.34517 * 125.78808 * 89.99893 * 3 2 1 5 5 C 1.41382 * 106.84094 * 180.02562 * 4 3 2 6 6 C 1.34519 * 106.83677 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.78445 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47099 * 339.99941 * 7 6 5 9 9 C 1.53004 * 109.47045 * 100.00132 * 7 6 5 10 10 O 1.42898 * 109.46885 * 54.99638 * 9 7 6 11 11 C 1.42910 * 113.99800 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46694 * 219.99711 * 7 6 5 13 13 C 1.46902 * 110.99842 * 155.00017 * 12 7 6 14 14 C 1.53004 * 109.47360 * 179.97438 * 13 12 7 15 15 C 1.53002 * 109.46807 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46583 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00144 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00055 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99662 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00340 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47069 * 59.99849 * 20 18 16 22 22 H 1.48497 * 109.47245 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47088 * 300.00236 * 20 18 16 24 24 O 1.34295 * 108.42259 * 0.26213 * 6 5 4 25 25 H 1.08999 * 109.47368 * 299.99866 * 1 2 3 26 26 H 1.08996 * 109.47555 * 59.99872 * 1 2 3 27 27 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46933 * 240.00298 * 2 1 3 29 29 H 1.09003 * 109.46869 * 119.99641 * 2 1 3 30 30 H 1.08000 * 126.57962 * 0.02562 * 4 3 2 31 31 H 1.07994 * 126.58348 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47142 * 174.99889 * 9 7 6 33 33 H 1.09001 * 109.46815 * 295.00119 * 9 7 6 34 34 H 1.09002 * 109.46740 * 59.99775 * 11 10 9 35 35 H 1.08998 * 109.46819 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46966 * 300.00085 * 11 10 9 37 37 H 1.00897 * 111.00413 * 31.05425 * 12 7 6 38 38 H 1.09001 * 109.47594 * 300.00356 * 13 12 7 39 39 H 1.09003 * 109.46874 * 60.00112 * 13 12 7 40 40 H 1.08993 * 109.47039 * 300.00085 * 14 13 12 41 41 H 1.08995 * 109.46391 * 60.00322 * 14 13 12 42 42 H 1.09002 * 109.47013 * 299.99947 * 15 14 13 43 43 H 1.08989 * 109.47436 * 60.00055 * 15 14 13 44 44 H 0.97004 * 119.99776 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7396 3.4235 0.6321 6 6 2.7223 3.3771 -0.7122 7 6 3.1173 4.4988 -1.6378 8 1 3.0789 5.4453 -1.0987 9 6 4.5394 4.2608 -2.1497 10 8 4.6178 2.9685 -2.7545 11 6 5.9115 2.6445 -3.2680 12 7 2.1888 4.5450 -2.7752 13 6 2.1369 5.8924 -3.3580 14 6 1.1623 5.9008 -4.5375 15 6 1.1089 7.3041 -5.1448 16 6 0.1484 7.3125 -6.3061 17 1 -0.3715 6.4073 -6.5835 18 6 -0.0666 8.4756 -7.0145 19 7 0.5661 9.5779 -6.6765 20 14 -1.2566 8.4859 -8.4544 21 1 -2.6098 8.0988 -7.9810 22 1 -1.3086 9.8479 -9.0439 23 1 -0.7968 7.5189 -9.4835 24 8 2.2872 2.1638 -1.0894 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.1858 1.8540 2.1204 31 1 3.0366 4.2628 1.2433 32 1 4.7926 5.0228 -2.8867 33 1 5.2394 4.3148 -1.3160 34 1 6.6397 2.6650 -2.4571 35 1 5.8880 1.6484 -3.7098 36 1 6.1935 3.3730 -4.0281 37 1 1.2685 4.2329 -2.5037 38 1 1.8000 6.6024 -2.6027 39 1 3.1302 6.1763 -3.7060 40 1 1.4997 5.1911 -5.2927 41 1 0.1691 5.6169 -4.1899 42 1 0.7716 8.0142 -4.3897 43 1 2.1022 7.5877 -5.4924 44 1 0.4145 10.3963 -7.1746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184803546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:29 Heat of formation + Delta-G solvation = -50.280620 kcal Electronic energy + Delta-G solvation = -21938.522420 eV Core-core repulsion = 18664.100790 eV Total energy + Delta-G solvation = -3274.421630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.56775 -38.18703 -36.29345 -34.36033 -33.70847 -32.78807 -31.66640 -29.41184 -27.89329 -26.32515 -25.60532 -24.03169 -22.76480 -21.61392 -21.28142 -20.22901 -19.78575 -17.10604 -16.48769 -16.26217 -16.18196 -15.61651 -15.18647 -14.75854 -14.64665 -14.49445 -14.32273 -14.00373 -13.23950 -13.20668 -12.91349 -12.72023 -12.46996 -12.36898 -12.21801 -11.76798 -11.72891 -11.48915 -11.43574 -11.20157 -11.07333 -10.80228 -10.53497 -10.50744 -9.84113 -9.68023 -9.56178 -9.31608 -9.04993 -8.31395 -8.29149 -8.19069 -5.96883 -3.98688 1.74253 2.58031 2.90017 3.36266 3.39984 3.43201 3.80412 4.25774 4.44602 4.50238 4.73383 4.96829 4.99570 5.03874 5.06897 5.27204 5.28466 5.32545 5.38934 5.41063 5.43721 5.56101 5.58497 5.63306 5.68692 5.76086 5.81223 5.87434 5.94181 5.97137 6.13412 6.32529 6.50281 6.73830 6.75895 7.14757 7.19850 7.21249 7.40499 7.60034 7.71344 7.86455 8.03650 8.47287 9.08259 9.65111 11.14601 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.003247 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.547888 B = 8622.309090 C = 9342.917685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.014 4.014 4 C -0.214 4.214 5 C -0.216 4.216 6 C 0.006 3.994 7 C 0.168 3.832 8 H 0.086 0.914 9 C 0.074 3.926 10 O -0.365 6.365 11 C 0.031 3.969 12 N -0.673 5.673 13 C 0.057 3.943 14 C -0.106 4.106 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 O -0.143 6.143 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.345 0.655 38 H 0.026 0.974 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -16.561 16.366 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.079 4.079 3 C -0.065 4.065 4 C -0.233 4.233 5 C -0.236 4.236 6 C -0.045 4.045 7 C 0.058 3.942 8 H 0.103 0.897 9 C -0.004 4.004 10 O -0.283 6.283 11 C -0.066 4.066 12 N -0.306 5.306 13 C -0.071 4.071 14 C -0.144 4.144 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 O -0.038 6.038 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.164 0.836 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.677 -16.820 15.542 24.154 hybrid contribution -0.747 0.935 0.138 1.205 sum 6.930 -15.886 15.680 23.372 Atomic orbital electron populations 1.21791 0.93995 1.02181 1.02808 1.20048 0.96330 0.87716 1.03836 1.22461 1.04291 0.95203 0.84509 1.21446 1.08252 0.94523 0.99127 1.21517 1.08775 0.99602 0.93672 1.22190 1.02969 0.85891 0.93491 1.20223 0.93248 0.91758 0.88997 0.89699 1.22575 0.94925 0.86443 0.96472 1.88046 1.29899 1.33183 1.77169 1.22703 0.85269 1.01134 0.97454 1.60554 1.13439 1.27010 1.29557 1.22258 1.01111 0.86652 0.97128 1.21608 0.96375 1.01122 0.95285 1.19056 0.97068 0.90020 0.95308 1.21232 1.24791 0.95555 1.14131 0.92697 1.25025 0.96221 0.95676 0.97588 1.69957 1.42623 1.00315 1.40812 0.86653 0.81593 0.76963 0.82766 1.20256 1.21335 1.20211 1.84081 1.63889 1.21768 1.34035 0.92311 0.91991 0.91783 0.90049 0.89246 0.83944 0.83814 0.92124 0.93379 0.94831 0.89936 0.94102 0.83632 0.95532 0.91377 0.92386 0.93585 0.96816 0.96605 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.04 -0.37 6.47 -27.88 -0.18 -0.55 16 3 C -0.01 -0.16 6.58 -35.62 -0.23 -0.40 16 4 C -0.21 -2.46 10.81 -39.70 -0.43 -2.89 16 5 C -0.22 -2.63 10.80 -39.70 -0.43 -3.06 16 6 C 0.01 0.08 5.36 -35.62 -0.19 -0.11 16 7 C 0.17 2.27 2.87 -68.86 -0.20 2.07 16 8 H 0.09 1.02 7.79 -51.93 -0.40 0.61 16 9 C 0.07 0.95 5.69 37.16 0.21 1.16 16 10 O -0.36 -5.35 10.03 -35.23 -0.35 -5.70 16 11 C 0.03 0.35 11.01 101.05 1.11 1.46 16 12 N -0.67 -10.66 6.24 -107.94 -0.67 -11.34 16 13 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 14 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 20 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 O -0.14 -2.12 10.53 5.74 0.06 -2.06 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.06 0.79 7.35 -51.93 -0.38 0.40 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.34 5.45 8.35 -39.29 -0.33 5.12 16 38 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 39 H 0.07 1.19 7.36 -51.93 -0.38 0.80 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -32.54 367.78 -8.19 -40.73 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.80 Total: 0.30 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.68 Total: -17.90 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.06 Total: -37.92 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.29 Total: -7.76 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.54 -8.19 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184803546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.547 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds