Wall clock time and date at job start Tue Mar 31 2020 07:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47259 * 2 1 4 4 C 1.34512 * 125.79226 * 89.99816 * 3 2 1 5 5 C 1.41379 * 106.84086 * 179.97438 * 4 3 2 6 6 C 1.34512 * 106.84332 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.79090 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47199 * 20.02070 * 7 6 5 9 9 C 1.53002 * 109.47101 * 260.02047 * 7 6 5 10 10 O 1.42901 * 109.47328 * 304.99978 * 9 7 6 11 11 C 1.42899 * 114.00149 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47263 * 140.02210 * 7 6 5 13 13 C 1.46898 * 110.99836 * 204.99590 * 12 7 6 14 14 C 1.53001 * 109.47320 * 179.97438 * 13 12 7 15 15 C 1.52991 * 109.47630 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47507 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99548 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00194 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47003 * 89.99950 * 20 18 16 22 22 H 1.48502 * 109.46976 * 210.00012 * 20 18 16 23 23 H 1.48502 * 109.47279 * 330.00037 * 20 18 16 24 24 O 1.34301 * 108.41872 * 359.97438 * 6 5 4 25 25 H 1.09000 * 109.47211 * 299.99729 * 1 2 3 26 26 H 1.09003 * 109.47272 * 60.00393 * 1 2 3 27 27 H 1.08998 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46898 * 239.99575 * 2 1 3 29 29 H 1.09001 * 109.47168 * 120.00140 * 2 1 3 30 30 H 1.07997 * 126.57601 * 0.02562 * 4 3 2 31 31 H 1.08007 * 126.57604 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47208 * 64.99875 * 9 7 6 33 33 H 1.09002 * 109.47523 * 184.99969 * 9 7 6 34 34 H 1.09000 * 109.46797 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47310 * 300.00220 * 11 10 9 36 36 H 1.09000 * 109.46868 * 60.00179 * 11 10 9 37 37 H 1.00900 * 110.99799 * 328.95305 * 12 7 6 38 38 H 1.08996 * 109.47892 * 299.99993 * 13 12 7 39 39 H 1.09002 * 109.47155 * 60.00166 * 13 12 7 40 40 H 1.09004 * 109.46953 * 300.00553 * 14 13 12 41 41 H 1.09002 * 109.46737 * 60.00074 * 14 13 12 42 42 H 1.09004 * 109.47149 * 300.00120 * 15 14 13 43 43 H 1.09002 * 109.47256 * 60.00078 * 15 14 13 44 44 H 0.97006 * 119.99823 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7409 3.4229 0.6319 6 6 2.7242 3.3763 -0.7123 7 6 3.1216 4.4971 -1.6380 8 1 3.7473 5.2087 -1.0993 9 6 1.8657 5.2066 -2.1483 10 8 0.9913 4.2514 -2.7526 11 6 -0.2187 4.8134 -3.2646 12 7 3.8714 3.9495 -2.7764 13 6 4.7584 4.9647 -3.3598 14 6 5.5212 4.3584 -4.5394 15 6 6.4455 5.4155 -5.1467 16 6 7.1963 4.8185 -6.3090 17 1 7.0310 3.7878 -6.5864 18 6 8.0949 5.5876 -7.0174 19 7 8.2965 6.8423 -6.6792 20 14 9.0250 4.8476 -8.4586 21 1 8.2466 5.0508 -9.7069 22 1 10.3479 5.5101 -8.5866 23 1 9.2199 3.3936 -8.2279 24 8 2.2944 2.1612 -1.0894 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1858 1.8539 2.1203 31 1 3.0382 4.2622 1.2433 32 1 1.3562 5.6886 -1.3139 33 1 2.1474 5.9586 -2.8854 34 1 -0.8270 4.0245 -3.7069 35 1 -0.7712 5.2870 -2.4531 36 1 0.0195 5.5574 -4.0247 37 1 4.3908 3.1279 -2.5056 38 1 4.1644 5.8102 -3.7068 39 1 5.4677 5.3045 -2.6051 40 1 6.1153 3.5131 -4.1920 41 1 4.8121 4.0183 -5.2943 42 1 5.8516 6.2610 -5.4941 43 1 7.1545 5.7552 -4.3917 44 1 8.9290 7.3833 -7.1774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184803573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:34 Heat of formation + Delta-G solvation = -50.339216 kcal Electronic energy + Delta-G solvation = -21942.580539 eV Core-core repulsion = 18668.156368 eV Total energy + Delta-G solvation = -3274.424171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.56768 -38.18798 -36.29458 -34.36585 -33.70996 -32.78828 -31.66852 -29.41758 -27.89317 -26.32984 -25.60487 -24.04741 -22.76214 -21.61236 -21.28462 -20.22811 -19.78718 -17.10876 -16.48788 -16.29339 -16.07574 -15.78422 -15.05034 -14.78822 -14.64636 -14.49311 -14.36103 -13.99815 -13.27294 -13.19850 -12.89028 -12.70043 -12.51850 -12.37489 -12.22118 -11.76233 -11.73949 -11.48815 -11.43645 -11.20885 -11.07806 -10.81988 -10.53408 -10.48576 -9.84117 -9.68215 -9.56337 -9.31896 -9.03916 -8.31792 -8.29400 -8.18946 -5.97142 -3.98840 1.74143 2.58059 2.89979 3.34615 3.40416 3.44510 3.80245 4.25761 4.44314 4.50160 4.73097 4.96126 4.98848 5.04494 5.05479 5.26850 5.28119 5.32260 5.38826 5.40882 5.43521 5.55233 5.57956 5.61928 5.68381 5.76142 5.81099 5.87407 5.91824 5.96912 6.13182 6.32568 6.50218 6.73886 6.75893 7.14786 7.19811 7.21167 7.40467 7.60139 7.71490 7.86363 8.03519 8.47236 9.08359 9.65058 11.14391 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.003086 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.871101 B = 9072.336144 C = 9461.126245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.014 4.014 4 C -0.214 4.214 5 C -0.216 4.216 6 C 0.006 3.994 7 C 0.168 3.832 8 H 0.086 0.914 9 C 0.074 3.926 10 O -0.365 6.365 11 C 0.031 3.969 12 N -0.674 5.674 13 C 0.057 3.943 14 C -0.106 4.106 15 C 0.023 3.977 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 O -0.143 6.143 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.015 -7.945 16.385 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.065 4.065 4 C -0.233 4.233 5 C -0.236 4.236 6 C -0.045 4.045 7 C 0.058 3.942 8 H 0.103 0.897 9 C -0.004 4.004 10 O -0.283 6.283 11 C -0.066 4.066 12 N -0.306 5.306 13 C -0.071 4.071 14 C -0.144 4.144 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 O -0.038 6.038 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.406 -7.971 15.565 24.673 hybrid contribution 1.187 0.268 0.131 1.224 sum -16.220 -7.703 15.695 23.848 Atomic orbital electron populations 1.21774 0.94075 1.02072 1.02688 1.20047 0.96289 0.87737 1.03918 1.22456 1.04250 0.95251 0.84513 1.21443 1.08230 0.94536 0.99129 1.21517 1.08852 0.99520 0.93674 1.22186 1.02883 0.85977 0.93492 1.20221 0.94413 0.90596 0.88996 0.89693 1.22576 0.89984 0.91382 0.96475 1.88044 1.29850 1.33154 1.77225 1.22701 0.87062 0.99337 0.97457 1.60554 1.31639 1.08880 1.29495 1.22254 0.93458 0.94300 0.97130 1.21608 0.97843 0.99647 0.95287 1.19062 0.93582 0.93532 0.95316 1.21268 1.22688 0.97654 1.14006 0.92643 1.25026 0.97029 0.94886 0.97600 1.69967 1.35991 1.07034 1.40717 0.86595 0.79198 0.79325 0.82897 1.20660 1.21279 1.19859 1.84085 1.63859 1.21800 1.34025 0.92410 0.92053 0.91826 0.90002 0.89204 0.83945 0.83814 0.93390 0.92129 0.89946 0.94835 0.94113 0.83617 0.91375 0.95537 0.93581 0.92387 0.96608 0.96806 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.78 16 2 C -0.04 -0.37 6.47 -27.89 -0.18 -0.55 16 3 C -0.01 -0.16 6.57 -35.63 -0.23 -0.40 16 4 C -0.21 -2.45 10.81 -39.70 -0.43 -2.88 16 5 C -0.22 -2.63 10.80 -39.70 -0.43 -3.06 16 6 C 0.01 0.08 5.36 -35.63 -0.19 -0.11 16 7 C 0.17 2.26 2.87 -68.86 -0.20 2.07 16 8 H 0.09 1.02 7.79 -51.93 -0.40 0.61 16 9 C 0.07 0.95 5.69 37.16 0.21 1.16 16 10 O -0.36 -5.33 10.03 -35.23 -0.35 -5.68 16 11 C 0.03 0.35 11.01 101.05 1.11 1.46 16 12 N -0.67 -10.66 6.24 -107.95 -0.67 -11.33 16 13 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 14 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 15 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 20 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 O -0.14 -2.11 10.52 5.71 0.06 -2.05 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.79 7.35 -51.93 -0.38 0.40 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.35 5.45 8.35 -39.29 -0.33 5.12 16 38 H 0.07 1.19 7.36 -51.93 -0.38 0.80 16 39 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -32.57 367.77 -8.19 -40.77 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.80 Total: 0.18 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.69 Total: -17.84 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.06 Total: -37.92 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.29 Total: -7.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.57 -8.19 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184803573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.573 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds