Wall clock time and date at job start Tue Mar 31 2020 06:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.62503 * 2 1 4 4 O 1.21278 * 119.99900 * 251.70778 * 3 2 1 5 5 N 1.34777 * 119.99982 * 71.71266 * 3 2 1 6 6 C 1.47577 * 134.48883 * 174.19680 * 5 3 2 7 7 C 1.53946 * 86.11497 * 155.36054 * 6 5 3 8 8 O 1.42902 * 113.74153 * 269.15490 * 7 6 5 9 9 C 1.50702 * 113.74503 * 137.95142 * 7 6 5 10 10 H 1.08001 * 119.99798 * 5.55872 * 9 7 6 11 11 C 1.37873 * 120.00108 * 185.83091 * 9 7 6 12 12 N 1.31511 * 120.00253 * 9.18548 * 11 9 7 13 13 Si 1.86803 * 119.99839 * 189.18464 * 11 9 7 14 14 H 1.48503 * 109.46985 * 94.99652 * 13 11 9 15 15 H 1.48501 * 109.47117 * 214.99259 * 13 11 9 16 16 H 1.48493 * 109.47279 * 334.99267 * 13 11 9 17 17 C 1.47579 * 134.49421 * 354.19720 * 5 3 2 18 18 C 1.50474 * 109.78995 * 120.48877 * 2 1 3 19 19 C 1.54069 * 112.49805 * 213.95455 * 18 2 1 20 20 C 1.54068 * 112.81644 * 318.28683 * 19 18 2 21 21 C 1.50475 * 112.49660 * 318.28040 * 20 19 18 22 22 C 1.54238 * 108.52543 * 94.14824 * 21 20 19 23 23 C 1.45542 * 112.41009 * 280.01980 * 22 21 20 24 24 H 1.09001 * 109.47116 * 64.69694 * 1 2 3 25 25 H 1.08999 * 109.47389 * 184.70554 * 1 2 3 26 26 H 1.09004 * 109.47120 * 304.70213 * 1 2 3 27 27 H 1.09000 * 113.77395 * 41.06335 * 6 5 3 28 28 H 1.09002 * 113.77066 * 269.65903 * 6 5 3 29 29 H 0.96703 * 114.00131 * 168.53391 * 8 7 6 30 30 H 0.96998 * 120.00323 * 179.97438 * 12 11 9 31 31 H 1.08997 * 113.76960 * 90.33611 * 17 5 3 32 32 H 1.09004 * 113.76701 * 318.94480 * 17 5 3 33 33 H 1.09007 * 108.87817 * 334.73219 * 18 2 1 34 34 H 1.08991 * 108.87888 * 93.17464 * 18 2 1 35 35 H 1.08997 * 108.81017 * 197.42138 * 19 18 2 36 36 H 1.09010 * 108.81188 * 79.14433 * 19 18 2 37 37 H 1.08996 * 108.87531 * 197.50851 * 20 19 18 38 38 H 1.08994 * 108.87620 * 79.05791 * 20 19 18 39 39 H 1.09006 * 109.62556 * 334.44481 * 21 20 19 40 40 H 1.08993 * 109.63227 * 213.86189 * 21 20 19 41 41 H 1.08993 * 108.89743 * 159.25812 * 22 21 20 42 42 H 1.09005 * 108.89264 * 40.77070 * 22 21 20 43 43 H 1.08995 * 108.89038 * 301.17918 * 23 22 21 44 44 H 1.09005 * 108.81802 * 182.63709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0362 1.4195 0.0000 4 8 2.5504 1.8799 -0.9972 5 7 1.9176 2.1772 1.1083 6 6 2.3812 3.5239 1.4948 7 6 1.2040 3.5301 2.4868 8 8 -0.0004 4.0780 1.9471 9 6 1.5528 4.0968 3.8390 10 1 2.5267 4.5324 4.0070 11 6 0.6308 4.0541 4.8631 12 7 -0.4792 3.3634 4.7203 13 14 0.9582 4.9774 6.4537 14 1 0.3046 6.3096 6.3962 15 1 0.4080 4.2051 7.5966 16 1 2.4220 5.1513 6.6328 17 6 1.2719 1.9935 2.4226 18 6 2.0395 -0.7184 1.2201 19 6 3.3501 -0.1119 1.7570 20 6 4.3399 0.2591 0.6362 21 6 4.4043 -0.7861 -0.4444 22 6 3.4262 -0.3893 -1.5689 23 6 2.0481 -0.7349 -1.2532 24 1 -0.3633 0.4392 -0.9291 25 1 -0.3634 -1.0242 0.0843 26 1 -0.3633 0.5851 0.8449 27 1 2.2901 4.2648 0.7005 28 1 3.3599 3.5308 1.9745 29 1 -0.7819 3.9271 2.4962 30 1 -1.1277 3.3330 5.4410 31 1 1.9248 1.5508 3.1747 32 1 0.2953 1.5124 2.3688 33 1 1.2813 -0.6676 2.0016 34 1 2.2126 -1.7642 0.9669 35 1 3.8253 -0.8339 2.4210 36 1 3.1138 0.7857 2.3286 37 1 5.3330 0.3808 1.0687 38 1 4.0319 1.2060 0.1930 39 1 4.1175 -1.7546 -0.0345 40 1 5.4176 -0.8394 -0.8424 41 1 3.7170 -0.9007 -2.4865 42 1 3.4921 0.6867 -1.7307 43 1 1.9837 -1.8097 -1.0840 44 1 1.4166 -0.4731 -2.1023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193138965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:44 Heat of formation + Delta-G solvation = -41.145243 kcal Electronic energy + Delta-G solvation = -24722.831433 eV Core-core repulsion = 21448.805943 eV Total energy + Delta-G solvation = -3274.025490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = -1.26 seconds Orbital eigenvalues (eV) -41.07175 -38.34472 -36.26215 -34.17063 -33.49788 -32.32211 -32.08852 -28.47083 -27.48281 -25.44045 -25.36251 -24.39600 -23.11789 -21.32864 -19.83555 -19.34242 -17.85111 -17.19122 -16.08065 -15.71783 -15.31965 -15.12267 -14.90006 -14.41128 -14.16503 -13.57197 -13.19812 -13.04020 -12.91066 -12.67281 -12.42858 -12.34986 -12.15333 -12.00296 -11.68292 -11.59240 -11.49496 -11.05475 -11.00029 -10.92918 -10.50981 -10.47422 -10.31661 -10.23117 -10.07580 -9.92827 -9.61370 -9.33136 -8.93050 -8.72672 -8.22160 -7.74889 -6.38324 -4.45774 3.15620 3.24386 3.25547 3.27424 3.61377 4.20865 4.69387 4.82982 4.87478 5.00126 5.18038 5.32363 5.35864 5.45351 5.53348 5.59153 5.65432 5.71734 5.82032 5.92693 5.93672 6.09371 6.11690 6.13649 6.17846 6.23798 6.33665 6.39941 6.42807 6.44103 6.47830 6.50250 6.56084 6.67350 6.69297 6.74867 6.80954 7.03631 7.06418 7.62920 7.87644 8.56402 8.57530 8.86077 9.21777 9.26266 10.68776 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.005574 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.222327 B = 5022.283196 C = 5178.623553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C 0.554 3.446 4 O -0.560 6.560 5 N -0.629 5.629 6 C 0.111 3.889 7 C 0.237 3.763 8 O -0.568 6.568 9 C -0.539 4.539 10 H 0.069 0.931 11 C 0.076 3.924 12 N -0.892 5.892 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.085 3.915 18 C -0.105 4.105 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.108 4.108 22 C -0.164 4.164 23 C -0.082 4.082 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.383 0.617 30 H 0.270 0.730 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.123 0.877 43 H 0.056 0.944 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -8.824 -4.733 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 C 0.346 3.654 4 O -0.443 6.443 5 N -0.362 5.362 6 C -0.011 4.011 7 C 0.196 3.804 8 O -0.376 6.376 9 C -0.577 4.577 10 H 0.088 0.912 11 C -0.128 4.128 12 N -0.530 5.530 13 Si 0.728 3.272 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.038 4.038 18 C -0.143 4.143 19 C -0.172 4.172 20 C -0.179 4.179 21 C -0.146 4.146 22 C -0.201 4.201 23 C -0.120 4.120 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.234 0.766 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.140 0.860 43 H 0.074 0.926 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.878 -8.576 -5.789 11.050 hybrid contribution -0.267 -0.008 1.481 1.505 sum 3.611 -8.583 -4.308 10.261 Atomic orbital electron populations 1.21900 0.92689 1.02190 1.02960 1.20481 0.96741 0.92820 0.97411 1.19796 0.77434 0.86335 0.81814 1.90350 1.47431 1.73422 1.33067 1.50231 1.54131 1.17955 1.13841 1.23379 0.98499 0.82694 0.96546 1.19881 0.82737 0.87723 0.90095 1.86125 1.19109 1.80525 1.51853 1.21441 1.01204 1.40619 0.94446 0.91234 1.25019 0.94907 0.93895 0.98947 1.69721 1.10034 1.38813 1.34465 0.86436 0.78788 0.79981 0.81988 1.20346 1.21095 1.19620 1.24331 0.96195 1.02479 0.80751 1.21367 0.97493 0.99119 0.96302 1.22258 0.94754 1.02030 0.98142 1.21683 0.98699 1.01134 0.96419 1.21240 0.98693 0.98470 0.96200 1.21235 0.94198 1.07465 0.97180 1.20249 0.97394 0.98350 0.95964 0.92339 0.91969 0.91332 0.91295 0.89763 0.76631 0.92032 0.89784 0.91244 0.91414 0.91827 0.92726 0.89901 0.93078 0.89790 0.92682 0.92849 0.93595 0.85962 0.92577 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.16 37.16 0.30 -1.75 16 2 C -0.07 -1.12 0.56 -156.27 -0.09 -1.21 16 3 C 0.55 10.59 3.53 -10.98 -0.04 10.55 16 4 O -0.56 -11.95 12.76 5.56 0.07 -11.88 16 5 N -0.63 -12.46 2.46 -178.34 -0.44 -12.90 16 6 C 0.11 2.33 8.23 -2.98 -0.02 2.31 16 7 C 0.24 5.43 1.27 -90.85 -0.12 5.32 16 8 O -0.57 -13.90 13.44 -35.23 -0.47 -14.37 16 9 C -0.54 -13.18 8.58 -34.44 -0.30 -13.48 16 10 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 11 C 0.08 1.85 5.34 -17.82 -0.10 1.75 16 12 N -0.89 -21.92 11.76 55.43 0.65 -21.27 16 13 Si 0.90 19.26 29.55 -169.99 -5.02 14.24 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 C 0.08 1.72 5.38 -2.98 -0.02 1.71 16 18 C -0.11 -1.51 3.94 -27.43 -0.11 -1.62 16 19 C -0.13 -2.04 5.08 -25.62 -0.13 -2.17 16 20 C -0.14 -2.21 5.27 -27.44 -0.14 -2.35 16 21 C -0.11 -1.51 5.61 -27.34 -0.15 -1.67 16 22 C -0.16 -2.45 5.16 -29.60 -0.15 -2.61 16 23 C -0.08 -1.17 4.25 -29.60 -0.13 -1.30 16 24 H 0.06 0.86 8.05 -51.93 -0.42 0.45 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.11 6.10 -51.93 -0.32 0.79 16 27 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 29 H 0.38 9.31 7.43 45.56 0.34 9.65 16 30 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 31 H 0.08 1.69 6.34 -51.93 -0.33 1.36 16 32 H 0.07 1.43 6.40 -51.93 -0.33 1.10 16 33 H 0.07 0.98 7.18 -51.93 -0.37 0.61 16 34 H 0.06 0.81 6.63 -51.93 -0.34 0.47 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.41 3.96 -51.92 -0.21 1.20 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.54 4.13 -51.93 -0.21 1.32 16 39 H 0.05 0.71 6.98 -51.93 -0.36 0.35 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.12 2.21 4.26 -54.35 -0.23 1.98 16 43 H 0.06 0.70 7.47 -51.93 -0.39 0.31 16 44 H 0.06 0.85 7.91 -51.93 -0.41 0.44 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -25.83 317.56 -7.70 -33.53 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.09 Total: 14.39 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.18 Total: -6.52 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.21 Total: -34.17 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.40 Total: -26.25 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -25.83 -7.70 -33.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.612 kcal (2) G-P(sol) polarization free energy of solvation -25.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.26 seconds