Wall clock time and date at job start Tue Mar 31 2020 07:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46823 * 2 1 4 4 C 1.50702 * 109.47179 * 119.99800 * 2 1 3 5 5 O 1.21280 * 119.99958 * 113.72391 * 4 2 1 6 6 N 1.34772 * 119.99866 * 293.72854 * 4 2 1 7 7 C 1.47576 * 134.49803 * 4.74710 * 6 4 2 8 8 C 1.53944 * 86.11888 * 155.35751 * 7 6 4 9 9 O 1.42897 * 113.74608 * 269.15361 * 8 7 6 10 10 C 1.50700 * 113.73981 * 137.95308 * 8 7 6 11 11 H 1.08005 * 120.00183 * 17.09968 * 10 8 7 12 12 C 1.37874 * 120.00398 * 197.09869 * 10 8 7 13 13 N 1.31512 * 120.00482 * 189.77386 * 12 10 8 14 14 Si 1.86806 * 119.99626 * 9.77628 * 12 10 8 15 15 H 1.48502 * 109.47257 * 179.97438 * 14 12 10 16 16 H 1.48499 * 109.47116 * 299.99932 * 14 12 10 17 17 H 1.48502 * 109.46915 * 59.99738 * 14 12 10 18 18 C 1.47825 * 134.45565 * 184.61567 * 6 4 2 19 19 C 1.52999 * 109.47046 * 239.99678 * 2 1 3 20 20 C 1.54890 * 110.75373 * 176.06035 * 19 2 1 21 21 C 1.54472 * 104.09986 * 203.89392 * 20 19 2 22 22 C 1.53873 * 106.68162 * 23.34814 * 21 20 19 23 23 C 1.54264 * 106.60182 * 0.15671 * 22 21 20 24 24 H 1.09000 * 109.46985 * 306.25814 * 1 2 3 25 25 H 1.08993 * 109.47351 * 66.26365 * 1 2 3 26 26 H 1.09007 * 109.47166 * 186.26406 * 1 2 3 27 27 H 1.09002 * 109.46853 * 176.70288 * 3 2 1 28 28 H 1.08999 * 109.47266 * 296.69601 * 3 2 1 29 29 H 1.08995 * 109.47572 * 56.70069 * 3 2 1 30 30 H 1.09002 * 113.76842 * 41.05929 * 7 6 4 31 31 H 1.08998 * 113.87509 * 269.67522 * 7 6 4 32 32 H 0.96693 * 114.00333 * 174.41228 * 9 8 7 33 33 H 0.96993 * 119.99831 * 354.90499 * 13 12 10 34 34 H 1.08999 * 113.76789 * 90.37937 * 18 6 4 35 35 H 1.09002 * 113.83024 * 318.91602 * 18 6 4 36 36 H 1.08992 * 110.67247 * 299.29952 * 19 2 1 37 37 H 1.08992 * 110.49095 * 322.42616 * 20 19 2 38 38 H 1.09005 * 110.48270 * 85.06634 * 20 19 2 39 39 H 1.08993 * 109.86066 * 264.10648 * 21 20 19 40 40 H 1.08997 * 110.15832 * 142.75209 * 21 20 19 41 41 H 1.08999 * 110.03066 * 240.86630 * 22 21 20 42 42 H 1.09005 * 110.07382 * 119.46663 * 22 21 20 43 43 H 1.08998 * 110.48606 * 217.71587 * 23 22 21 44 44 H 1.08994 * 110.60355 * 95.12450 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.6329 -1.7585 1.1229 6 7 1.8142 -0.1809 2.4505 7 6 1.0697 0.9907 2.9515 8 6 0.9719 0.2272 4.2847 9 8 -0.1964 -0.5879 4.3967 10 6 1.2036 1.0915 5.4973 11 1 1.1400 2.1665 5.4143 12 6 1.4968 0.5101 6.7125 13 7 1.5094 1.2415 7.8055 14 14 1.8761 -1.3166 6.8067 15 1 2.1569 -1.6919 8.2158 16 1 0.7098 -2.0905 6.3107 17 1 3.0638 -1.6193 5.9682 18 6 2.2230 -0.5426 3.8243 19 6 2.0400 -0.7213 -1.2492 20 6 3.5853 -0.6531 -1.3300 21 6 3.8918 -0.8326 -2.8333 22 6 2.6254 -0.4064 -3.5963 23 6 1.5931 0.0216 -2.5328 24 1 -0.3633 0.6078 0.8287 25 1 -0.3634 0.4136 -0.9407 26 1 -0.3634 -1.0216 0.1121 27 1 3.1283 1.4431 0.0591 28 1 1.7257 1.9390 -0.9181 29 1 1.6291 1.9731 0.8589 30 1 0.1083 1.1429 2.4610 31 1 1.6665 1.9009 3.0092 32 1 -0.2201 -1.1340 5.1942 33 1 1.3857 2.2018 7.7478 34 1 3.1609 -0.0848 4.1384 35 1 2.1806 -1.6124 4.0291 36 1 1.6977 -1.7560 -1.2627 37 1 3.9431 0.3160 -0.9823 38 1 4.0336 -1.4578 -0.7472 39 1 4.1198 -1.8777 -3.0425 40 1 4.7323 -0.2021 -3.1232 41 1 2.2388 -1.2447 -4.1759 42 1 2.8505 0.4312 -4.2566 43 1 0.5912 -0.2921 -2.8257 44 1 1.6248 1.1003 -2.3799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193139080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:49 Heat of formation + Delta-G solvation = -61.539532 kcal Electronic energy + Delta-G solvation = -23747.942994 eV Core-core repulsion = 20473.033141 eV Total energy + Delta-G solvation = -3274.909853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44313 -38.78372 -37.05291 -34.52893 -33.97014 -32.62443 -28.90285 -28.82016 -27.58235 -27.23539 -25.70082 -25.04378 -22.90326 -20.39639 -20.14596 -19.24397 -18.16915 -17.85273 -16.31543 -16.18114 -15.64399 -15.31444 -15.00755 -14.75589 -14.12546 -13.77405 -13.54983 -13.51875 -13.25112 -12.98748 -12.60242 -12.36644 -12.14690 -12.07620 -11.74754 -11.64214 -11.39813 -11.18752 -11.09829 -10.98025 -10.89650 -10.72236 -10.48242 -10.36746 -10.28100 -10.22683 -9.95123 -9.48070 -9.09203 -8.95736 -8.49505 -7.97167 -6.72038 -4.48157 3.09939 3.12787 3.24365 3.30620 3.47745 4.19066 4.46877 4.57003 4.66592 4.83422 4.87811 5.03154 5.09607 5.17807 5.32848 5.41053 5.54503 5.56116 5.58502 5.62142 5.68323 5.74692 5.77884 5.83014 5.88430 5.91165 5.97227 6.06795 6.08415 6.12695 6.15026 6.21830 6.24168 6.28500 6.38693 6.47075 6.55266 6.58011 6.72856 7.52998 8.06795 8.34401 8.55368 8.67488 8.70273 9.27900 10.64201 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034354 B = 0.004610 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.848241 B = 6071.847701 C = 6304.225974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 C -0.148 4.148 4 C 0.540 3.460 5 O -0.556 6.556 6 N -0.630 5.630 7 C 0.121 3.879 8 C 0.197 3.803 9 O -0.568 6.568 10 C -0.615 4.615 11 H 0.070 0.930 12 C 0.037 3.963 13 N -0.890 5.890 14 Si 1.039 2.961 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.271 1.271 18 C 0.067 3.933 19 C -0.064 4.064 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.124 4.124 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.368 0.632 33 H 0.273 0.727 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -0.476 -17.522 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.205 4.205 4 C 0.329 3.671 5 O -0.435 6.435 6 N -0.363 5.363 7 C -0.002 4.002 8 C 0.156 3.844 9 O -0.378 6.378 10 C -0.653 4.653 11 H 0.088 0.912 12 C -0.171 4.171 13 N -0.523 5.523 14 Si 0.867 3.133 15 H -0.204 1.204 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.056 4.056 19 C -0.083 4.083 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.218 0.782 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.241 -2.045 -17.266 17.431 hybrid contribution -0.130 1.055 -0.496 1.173 sum 1.110 -0.990 -17.762 17.824 Atomic orbital electron populations 1.21896 0.92729 1.02746 1.02535 1.20659 0.97083 0.96334 0.93090 1.22067 1.01627 0.94142 1.02680 1.20133 0.78937 0.85001 0.83005 1.90613 1.43413 1.23441 1.86040 1.50118 1.51877 1.29071 1.05271 1.23342 0.95100 0.89461 0.92272 1.20444 0.81923 0.88239 0.93815 1.86339 1.43629 1.60198 1.47601 1.22218 1.54242 0.94714 0.94111 0.91207 1.25794 0.92873 1.06699 0.91719 1.70809 1.44384 1.08316 1.28751 0.84177 0.77574 0.74501 0.77018 1.20357 1.20694 1.19684 1.24570 1.01630 1.00577 0.78773 1.21874 0.95583 0.99167 0.91628 1.22554 0.95548 1.02422 0.95473 1.22158 0.97389 1.00941 0.95680 1.22104 0.95683 1.00520 0.97728 1.22556 0.98407 1.00570 0.94561 0.91540 0.91690 0.92314 0.92013 0.91365 0.91690 0.90637 0.89145 0.78189 0.91632 0.89185 0.91709 0.90173 0.91682 0.90565 0.92191 0.92281 0.92178 0.92191 0.91826 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.25 37.16 0.31 -1.58 16 2 C -0.07 -0.99 0.36 -155.66 -0.06 -1.04 16 3 C -0.15 -1.86 7.59 37.16 0.28 -1.58 16 4 C 0.54 10.28 6.42 -10.99 -0.07 10.21 16 5 O -0.56 -12.18 15.34 5.56 0.09 -12.09 16 6 N -0.63 -12.54 3.52 -178.11 -0.63 -13.17 16 7 C 0.12 2.30 5.77 -2.97 -0.02 2.29 16 8 C 0.20 4.44 1.06 -90.85 -0.10 4.34 16 9 O -0.57 -13.09 13.46 -35.23 -0.47 -13.56 16 10 C -0.61 -15.76 9.05 -34.44 -0.31 -16.07 16 11 H 0.07 1.90 8.05 -52.48 -0.42 1.47 16 12 C 0.04 0.97 5.46 -17.82 -0.10 0.88 16 13 N -0.89 -25.25 13.70 55.43 0.76 -24.49 16 14 Si 1.04 23.06 24.74 -169.99 -4.21 18.85 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -5.67 5.63 56.52 0.32 -5.35 16 17 H -0.27 -5.73 6.29 56.52 0.36 -5.37 16 18 C 0.07 1.45 5.73 -2.84 -0.02 1.44 16 19 C -0.06 -0.84 1.79 -88.62 -0.16 -1.00 16 20 C -0.12 -1.63 5.46 -24.96 -0.14 -1.76 16 21 C -0.12 -1.33 6.81 -25.50 -0.17 -1.50 16 22 C -0.12 -1.17 6.80 -25.61 -0.17 -1.35 16 23 C -0.12 -1.27 5.17 -25.07 -0.13 -1.40 16 24 H 0.07 0.92 5.69 -51.93 -0.30 0.63 16 25 H 0.06 0.70 6.97 -51.93 -0.36 0.33 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.80 6.22 -51.93 -0.32 0.47 16 28 H 0.07 0.70 5.93 -51.93 -0.31 0.39 16 29 H 0.06 0.84 5.83 -51.93 -0.30 0.53 16 30 H 0.08 1.33 6.00 -51.93 -0.31 1.02 16 31 H 0.09 1.62 7.80 -51.93 -0.40 1.21 16 32 H 0.37 8.04 5.63 45.56 0.26 8.30 16 33 H 0.27 7.69 8.72 -40.82 -0.36 7.34 16 34 H 0.09 1.94 8.09 -51.93 -0.42 1.52 16 35 H 0.06 1.43 6.79 -51.93 -0.35 1.08 16 36 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 37 H 0.06 0.85 5.76 -51.93 -0.30 0.55 16 38 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.61 7.85 -51.93 -0.41 0.20 16 44 H 0.07 0.69 5.70 -51.93 -0.30 0.40 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -29.41 322.40 -6.88 -36.29 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.43 Total: 11.44 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.85 Total: -8.13 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.13 Total: -37.66 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.39 Total: -25.65 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.21 Total: 18.85 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.41 -6.88 -36.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193139080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.249 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds