Wall clock time and date at job start Tue Mar 31 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99955 * 90.00092 * 10 9 7 12 12 C 1.52997 * 109.47562 * 89.99893 * 11 10 9 13 13 C 1.52995 * 117.49983 * 243.74918 * 12 11 10 14 14 C 1.52998 * 117.50402 * 175.08623 * 12 11 10 15 15 C 1.34777 * 119.99692 * 269.99667 * 10 9 7 16 16 O 1.21283 * 120.00171 * 0.02562 * 15 10 9 17 17 C 1.50703 * 119.99512 * 180.02562 * 15 10 9 18 18 C 1.53008 * 109.46749 * 180.02562 * 17 15 10 19 19 H 1.08994 * 109.52268 * 54.87285 * 18 17 15 20 20 C 1.53179 * 109.52130 * 174.99879 * 18 17 15 21 21 C 1.53175 * 109.03752 * 176.88294 * 20 18 17 22 22 C 1.53101 * 109.16113 * 303.01937 * 21 20 18 23 23 O 1.42904 * 109.41156 * 57.61150 * 22 21 20 24 24 C 1.42907 * 114.09596 * 298.83364 * 23 22 21 25 25 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 27 27 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 28 28 H 1.09005 * 109.47406 * 209.99994 * 11 10 9 29 29 H 1.09005 * 109.47323 * 329.99884 * 11 10 9 30 30 H 1.09011 * 115.54802 * 29.41282 * 12 11 10 31 31 H 1.09004 * 117.50290 * 359.97438 * 13 12 11 32 32 H 1.09001 * 117.50211 * 145.01939 * 13 12 11 33 33 H 1.09004 * 117.50084 * 214.97955 * 14 12 11 34 34 H 1.08997 * 117.49801 * 359.97438 * 14 12 11 35 35 H 1.09005 * 109.47206 * 299.99520 * 17 15 10 36 36 H 1.08996 * 109.47343 * 60.00535 * 17 15 10 37 37 H 1.08997 * 109.54124 * 296.75238 * 20 18 17 38 38 H 1.09003 * 109.53872 * 57.01488 * 20 18 17 39 39 H 1.09000 * 109.51958 * 62.92451 * 21 20 18 40 40 H 1.09001 * 109.52183 * 183.05313 * 21 20 18 41 41 H 1.09002 * 109.47814 * 177.58648 * 22 21 20 42 42 H 1.08997 * 109.48007 * 297.61142 * 22 21 20 43 43 H 1.08992 * 109.48199 * 301.18273 * 24 23 22 44 44 H 1.09004 * 109.48121 * 181.14521 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.6782 -4.1688 1.2711 12 6 1.7473 -5.2998 1.7126 13 6 0.9676 -5.1054 3.0145 14 6 2.1388 -6.0896 2.9631 15 6 2.6419 -4.1253 -1.1649 16 8 2.2490 -3.6646 -2.2157 17 6 3.6209 -5.2711 -1.1636 18 6 3.9540 -5.6589 -2.6057 19 1 4.3103 -4.7817 -3.1458 20 6 5.0413 -6.7378 -2.6076 21 6 5.3106 -7.1733 -4.0512 22 6 4.0039 -7.6643 -4.6800 23 8 3.0266 -6.6235 -4.6181 24 6 2.6997 -6.2083 -3.2903 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6248 -2.5571 -0.8896 28 1 3.6878 -4.5588 1.1417 29 1 2.6853 -3.3867 2.0304 30 1 1.2543 -5.8444 0.9072 31 1 1.1181 -4.1719 3.5568 32 1 -0.0382 -5.5224 3.0659 33 1 1.9031 -7.1537 2.9806 34 1 3.0598 -5.8038 3.4710 35 1 4.5332 -4.9690 -0.6491 36 1 3.1798 -6.1253 -0.6500 37 1 5.9555 -6.3348 -2.1717 38 1 4.7050 -7.5953 -2.0246 39 1 5.6939 -6.3271 -4.6214 40 1 6.0444 -7.9793 -4.0576 41 1 4.1808 -7.9353 -5.7209 42 1 3.6425 -8.5355 -4.1338 43 1 2.3212 -7.0604 -2.7259 44 1 1.9370 -5.4306 -3.3300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193155274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:13 Heat of formation + Delta-G solvation = -77.900988 kcal Electronic energy + Delta-G solvation = -22982.858287 eV Core-core repulsion = 19707.238948 eV Total energy + Delta-G solvation = -3275.619339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -39.89461 -38.72861 -37.23216 -34.71501 -34.17854 -32.75855 -31.96156 -28.34353 -27.10582 -25.57140 -24.94194 -23.23038 -22.28978 -22.05864 -20.78415 -20.02882 -18.54504 -16.94684 -16.48972 -16.26441 -15.96302 -15.54116 -15.12270 -14.87282 -14.59427 -14.16975 -13.76082 -13.68399 -13.46472 -12.91844 -12.60696 -12.43323 -12.27708 -12.05471 -11.69489 -11.51643 -11.44784 -11.29445 -11.22998 -10.97087 -10.87319 -10.73724 -10.59157 -10.29576 -10.21076 -10.11254 -9.81085 -9.38010 -9.13287 -8.89591 -8.37006 -7.64532 -6.37178 -4.09036 3.33221 3.42399 3.48792 3.63123 3.69499 3.93808 4.02600 4.54136 4.66821 4.72136 4.79637 4.87644 4.93446 5.00627 5.04986 5.14901 5.24278 5.37506 5.42991 5.45601 5.53778 5.58875 5.60647 5.64236 5.65685 5.73779 5.78681 5.87234 5.93142 5.98346 5.98548 6.04772 6.18018 6.36224 6.38196 6.43329 6.84994 7.14966 7.30412 7.41489 8.05656 8.29300 8.44703 8.79219 9.01520 9.60728 11.00228 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.005210 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.862000 B = 5372.733243 C = 6750.909348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.605 4.605 8 H 0.050 0.950 9 C 0.237 3.763 10 N -0.590 5.590 11 C 0.143 3.857 12 C -0.168 4.168 13 C -0.175 4.175 14 C -0.180 4.180 15 C 0.503 3.497 16 O -0.537 6.537 17 C -0.134 4.134 18 C -0.106 4.106 19 H 0.088 0.912 20 C -0.117 4.117 21 C -0.155 4.155 22 C 0.057 3.943 23 O -0.380 6.380 24 C 0.063 3.937 25 H 0.268 0.732 26 H 0.021 0.979 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 -17.116 1.274 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.184 4.184 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.644 4.644 8 H 0.069 0.931 9 C 0.118 3.882 10 N -0.321 5.321 11 C 0.018 3.982 12 C -0.188 4.188 13 C -0.212 4.212 14 C -0.217 4.217 15 C 0.290 3.710 16 O -0.415 6.415 17 C -0.174 4.174 18 C -0.125 4.125 19 H 0.106 0.894 20 C -0.155 4.155 21 C -0.193 4.193 22 C -0.020 4.020 23 O -0.298 6.298 24 C -0.013 4.013 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.561 -15.112 0.551 17.377 hybrid contribution 0.406 -1.839 0.513 1.952 sum 8.967 -16.950 1.064 19.205 Atomic orbital electron populations 1.70773 1.06805 1.30475 1.46553 1.25783 0.96446 1.02556 0.93644 0.83483 0.74749 0.75030 0.76588 1.21490 1.21552 1.20862 1.22267 0.94592 0.91765 1.55793 0.93135 1.19312 0.88168 0.83698 0.97055 1.48011 1.45482 1.34477 1.04121 1.21017 0.95423 0.94276 0.87453 1.22898 1.03138 1.00838 0.91881 1.23018 0.96201 1.01143 1.00844 1.22930 0.99730 0.97258 1.01814 1.20399 0.82456 0.84014 0.84084 1.90650 1.58470 1.61664 1.30682 1.21722 0.99826 0.97975 0.97893 1.21535 0.96421 0.99193 0.95357 0.89371 1.21659 0.98921 0.98463 0.96450 1.22178 0.98296 1.01869 0.96928 1.22550 0.88350 0.90016 1.01072 1.87990 1.59177 1.54939 1.27744 1.22884 0.97014 0.98881 0.82536 0.92202 0.96071 0.94970 0.91053 0.89899 0.88045 0.88460 0.89131 0.89111 0.88781 0.89227 0.89537 0.91455 0.91942 0.90979 0.91171 0.89330 0.93627 0.94182 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.87 13.65 55.43 0.76 -27.11 16 2 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 3 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.61 -17.33 9.39 -34.44 -0.32 -17.65 16 8 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.24 6.14 4.47 -5.19 -0.02 6.12 16 10 N -0.59 -12.25 2.46 -175.06 -0.43 -12.68 16 11 C 0.14 2.28 5.49 -4.05 -0.02 2.26 16 12 C -0.17 -2.29 5.94 -90.63 -0.54 -2.82 16 13 C -0.18 -2.23 10.18 -26.70 -0.27 -2.51 16 14 C -0.18 -1.92 10.25 -26.70 -0.27 -2.20 16 15 C 0.50 10.17 7.41 -10.98 -0.08 10.09 16 16 O -0.54 -13.16 13.57 5.56 0.08 -13.09 16 17 C -0.13 -1.92 3.73 -27.88 -0.10 -2.02 16 18 C -0.11 -1.50 2.03 -90.48 -0.18 -1.69 16 19 H 0.09 1.48 7.95 -51.93 -0.41 1.06 16 20 C -0.12 -1.25 5.31 -26.55 -0.14 -1.40 16 21 C -0.15 -1.56 6.14 -26.59 -0.16 -1.72 16 22 C 0.06 0.63 6.84 37.21 0.25 0.89 16 23 O -0.38 -5.84 10.77 -35.23 -0.38 -6.22 16 24 C 0.06 0.97 5.84 37.21 0.22 1.18 16 25 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 26 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 27 H 0.03 0.93 7.29 -51.93 -0.38 0.56 16 28 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 29 H 0.08 1.41 7.81 -51.93 -0.41 1.01 16 30 H 0.10 1.44 8.14 -51.92 -0.42 1.01 16 31 H 0.10 1.29 8.03 -51.93 -0.42 0.88 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.15 7.40 -51.93 -0.38 0.76 16 36 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.12 2.14 6.04 -51.93 -0.31 1.82 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -33.37 351.68 -9.14 -42.50 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.63 Total: 1.55 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.75 Total: -10.99 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.33 Total: -39.79 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.30 Total: -19.31 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.37 -9.14 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193155274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.396 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds