Wall clock time and date at job start Tue Mar 31 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00223 * 2 1 4 4 H 1.48500 * 109.47122 * 270.00030 * 3 2 1 5 5 H 1.48503 * 109.47334 * 29.99820 * 3 2 1 6 6 H 1.48501 * 109.47443 * 149.99618 * 3 2 1 7 7 C 1.37873 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99739 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00644 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47695 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99582 * 89.99854 * 10 9 7 12 12 C 1.52996 * 109.47146 * 90.00492 * 11 10 9 13 13 C 1.53000 * 117.49997 * 184.99862 * 12 11 10 14 14 C 1.53002 * 60.02940 * 252.49592 * 13 12 11 15 15 C 1.34774 * 120.00216 * 269.99822 * 10 9 7 16 16 O 1.21279 * 119.99706 * 0.02562 * 15 10 9 17 17 C 1.50691 * 120.00117 * 179.97438 * 15 10 9 18 18 C 1.53000 * 109.47236 * 180.02562 * 17 15 10 19 19 H 1.08993 * 109.52275 * 305.00098 * 18 17 15 20 20 C 1.53179 * 109.52392 * 184.87091 * 18 17 15 21 21 C 1.53184 * 109.03366 * 183.17236 * 20 18 17 22 22 C 1.53095 * 109.20964 * 56.88987 * 21 20 18 23 23 O 1.42901 * 109.41717 * 302.42313 * 22 21 20 24 24 C 1.42901 * 114.09533 * 61.15873 * 23 22 21 25 25 H 0.97008 * 119.99524 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47168 * 59.99664 * 9 7 2 27 27 H 1.09003 * 109.46809 * 300.00210 * 9 7 2 28 28 H 1.08994 * 109.47165 * 329.99950 * 11 10 9 29 29 H 1.09001 * 109.46856 * 210.00150 * 11 10 9 30 30 H 1.09008 * 115.56055 * 330.68375 * 12 11 10 31 31 H 1.09002 * 117.49833 * 359.97438 * 13 12 11 32 32 H 1.09002 * 117.49953 * 144.99738 * 13 12 11 33 33 H 1.09000 * 117.49996 * 107.50493 * 14 13 12 34 34 H 1.08999 * 117.49664 * 252.51862 * 14 13 12 35 35 H 1.09003 * 109.47192 * 300.00011 * 17 15 10 36 36 H 1.08999 * 109.47500 * 59.99898 * 17 15 10 37 37 H 1.08996 * 109.54905 * 302.98401 * 20 18 17 38 38 H 1.09001 * 109.54050 * 63.24783 * 20 18 17 39 39 H 1.08997 * 109.47570 * 296.98748 * 21 20 18 40 40 H 1.09003 * 109.52553 * 176.82349 * 21 20 18 41 41 H 1.09006 * 109.48330 * 182.43957 * 22 21 20 42 42 H 1.09004 * 109.48102 * 62.40868 * 22 21 20 43 43 H 1.09002 * 109.47910 * 178.86121 * 24 23 22 44 44 H 1.09003 * 109.49464 * 58.83033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2444 -3.2668 -1.2660 12 6 5.6896 -3.0267 -1.7073 13 6 6.1107 -3.5711 -3.0737 14 6 6.6136 -4.2439 -1.7949 15 6 4.2240 -3.2099 1.1699 16 8 4.0211 -2.6376 2.2197 17 6 4.7258 -4.6309 1.1710 18 6 4.8948 -5.1109 2.6139 19 1 5.5434 -4.4211 3.1537 20 6 5.5188 -6.5099 2.6182 21 6 5.6097 -7.0119 4.0626 22 6 4.2136 -6.9951 4.6905 23 8 3.6797 -5.6711 4.6264 24 6 3.5263 -5.1677 3.2978 25 1 -0.4850 0.8402 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.5639 -2.8831 -2.0261 29 1 4.0773 -4.3359 -1.1350 30 1 6.1295 -2.0832 -1.3841 31 1 5.3582 -4.1007 -3.6582 32 1 6.8273 -2.9856 -3.6497 33 1 6.1920 -5.2157 -1.5382 34 1 7.6610 -4.1007 -1.5294 35 1 4.0076 -5.2702 0.6575 36 1 5.6860 -4.6776 0.6574 37 1 4.8961 -7.1888 2.0356 38 1 6.5172 -6.4650 2.1832 39 1 6.2732 -6.3613 4.6323 40 1 6.0006 -8.0294 4.0707 41 1 4.2795 -7.3104 5.7319 42 1 3.5613 -7.6769 4.1448 43 1 3.0972 -4.1664 3.3359 44 1 2.8650 -5.8254 2.7337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193155285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:31 Heat of formation + Delta-G solvation = -70.018808 kcal Electronic energy + Delta-G solvation = -23078.271285 eV Core-core repulsion = 19802.993743 eV Total energy + Delta-G solvation = -3275.277542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -39.88668 -38.71517 -37.24878 -34.69924 -34.12166 -32.49360 -31.93200 -28.93207 -27.32115 -25.99633 -24.88115 -23.11303 -22.37367 -21.70466 -20.75334 -19.99130 -18.34513 -16.91399 -16.67119 -16.17761 -15.95337 -15.45425 -15.12676 -14.89191 -14.54985 -14.26430 -14.01150 -13.64973 -13.49829 -12.62573 -12.61358 -12.52841 -12.30689 -12.04028 -12.00670 -11.55450 -11.52307 -11.37422 -11.19228 -10.96454 -10.81954 -10.72361 -10.52501 -10.38935 -10.16189 -10.04558 -9.89372 -9.52619 -9.31205 -8.89353 -8.58287 -7.73194 -6.07914 -4.06509 3.27620 3.34187 3.36021 3.40487 3.67355 3.89961 4.08412 4.40768 4.67606 4.75721 4.82134 4.84427 4.94036 4.99312 5.03885 5.19654 5.23795 5.28920 5.38903 5.50971 5.51550 5.59669 5.60793 5.64672 5.71799 5.80323 5.81440 5.89199 5.90574 6.00004 6.01286 6.07103 6.09452 6.35467 6.44886 6.49951 6.68617 6.99557 7.34261 7.39762 7.62325 8.25832 8.47754 8.93578 9.00197 9.52721 11.05476 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.005634 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.560250 B = 4969.042247 C = 6551.994988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.215 3.785 10 N -0.591 5.591 11 C 0.142 3.858 12 C -0.167 4.167 13 C -0.176 4.176 14 C -0.185 4.185 15 C 0.508 3.492 16 O -0.536 6.536 17 C -0.136 4.136 18 C -0.105 4.105 19 H 0.086 0.914 20 C -0.117 4.117 21 C -0.154 4.154 22 C 0.056 3.944 23 O -0.380 6.380 24 C 0.061 3.939 25 H 0.264 0.736 26 H 0.041 0.959 27 H 0.024 0.976 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.119 0.881 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.711 -14.265 -0.970 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.321 5.321 11 C 0.017 3.983 12 C -0.187 4.187 13 C -0.213 4.213 14 C -0.222 4.222 15 C 0.295 3.705 16 O -0.414 6.414 17 C -0.176 4.176 18 C -0.124 4.124 19 H 0.104 0.896 20 C -0.155 4.155 21 C -0.192 4.192 22 C -0.021 4.021 23 O -0.298 6.298 24 C -0.016 4.016 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.137 0.863 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.370 -13.704 -0.246 19.147 hybrid contribution 0.469 0.714 -0.532 1.007 sum 13.838 -12.990 -0.778 18.996 Atomic orbital electron populations 1.69900 1.06197 1.26963 1.50547 1.24845 0.94738 0.98915 0.94455 0.86874 0.80658 0.83921 0.78460 1.20147 1.20958 1.18867 1.21315 0.89197 0.94778 1.51299 0.90798 1.19656 0.95633 0.77917 0.97309 1.47877 1.64053 1.15799 1.04382 1.21039 0.93029 0.96885 0.87298 1.22955 0.96952 0.98424 1.00335 1.22907 1.03609 1.04101 0.90710 1.23062 0.99591 0.97058 1.02464 1.20365 0.78125 0.88043 0.83928 1.90647 1.52126 1.67825 1.30791 1.21744 1.02861 0.95008 0.97956 1.21524 0.99008 0.96545 0.95299 0.89580 1.21659 1.01077 0.96292 0.96459 1.22174 0.98562 1.01560 0.96913 1.22549 0.93234 0.85270 1.01021 1.87992 1.83939 1.30057 1.27842 1.22935 0.95013 1.01213 0.82407 0.92585 0.94129 0.95772 0.89306 0.91128 0.87545 0.88637 0.89001 0.88800 0.89178 0.89534 0.88951 0.91906 0.91550 0.91094 0.91234 0.89395 0.93581 0.86279 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 8 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.22 5.20 4.23 -5.20 -0.02 5.18 16 10 N -0.59 -11.75 2.46 -175.07 -0.43 -12.18 16 11 C 0.14 2.16 5.49 -4.04 -0.02 2.14 16 12 C -0.17 -2.14 5.95 -90.59 -0.54 -2.68 16 13 C -0.18 -1.80 10.25 -26.73 -0.27 -2.08 16 14 C -0.18 -1.85 9.18 -26.69 -0.25 -2.09 16 15 C 0.51 9.97 7.41 -10.99 -0.08 9.89 16 16 O -0.54 -12.75 13.56 5.56 0.08 -12.68 16 17 C -0.14 -1.90 3.73 -27.89 -0.10 -2.01 16 18 C -0.10 -1.46 2.03 -90.48 -0.18 -1.65 16 19 H 0.09 1.36 7.96 -51.93 -0.41 0.95 16 20 C -0.12 -1.23 5.32 -26.54 -0.14 -1.38 16 21 C -0.15 -1.55 6.13 -26.59 -0.16 -1.71 16 22 C 0.06 0.65 6.84 37.21 0.25 0.90 16 23 O -0.38 -6.06 10.77 -35.23 -0.38 -6.44 16 24 C 0.06 0.98 5.84 37.21 0.22 1.20 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.04 1.07 6.48 -51.93 -0.34 0.73 16 27 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 28 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 29 H 0.07 0.91 6.18 -51.93 -0.32 0.59 16 30 H 0.11 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.84 7.88 -51.93 -0.41 0.43 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 36 H 0.09 1.10 6.85 -51.93 -0.36 0.74 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.12 2.37 6.02 -51.93 -0.31 2.05 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -33.19 347.04 -8.72 -41.91 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.58 Total: 1.76 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.74 Total: -7.62 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.34 Total: -39.10 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.30 Total: -19.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.19 -8.72 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193155285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.104 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds