Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86799 * 120.00339 * 2 1 4 4 H 1.48499 * 109.47081 * 269.99783 * 3 2 1 5 5 H 1.48500 * 109.47190 * 29.99590 * 3 2 1 6 6 H 1.48496 * 109.47250 * 149.99881 * 3 2 1 7 7 C 1.38959 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99570 * 201.95931 * 7 2 1 9 9 N 1.37089 * 120.00250 * 21.69150 * 7 2 1 10 10 C 1.34775 * 120.00084 * 40.52849 * 9 7 2 11 11 O 1.21295 * 120.00031 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00094 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.47357 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.51835 * 305.12972 * 13 12 10 15 15 C 1.53167 * 109.52352 * 185.00444 * 13 12 10 16 16 C 1.53179 * 109.03781 * 183.11392 * 15 13 12 17 17 C 1.53093 * 109.16129 * 56.97892 * 16 15 13 18 18 O 1.42901 * 109.41529 * 302.39111 * 17 16 15 19 19 C 1.42911 * 114.09649 * 61.16068 * 18 17 16 20 20 C 1.46504 * 120.00132 * 220.53593 * 9 7 2 21 21 C 1.54262 * 110.03294 * 58.38645 * 20 9 7 22 22 C 1.54962 * 104.16124 * 217.13989 * 21 20 9 23 23 C 1.54889 * 102.77799 * 37.88818 * 22 21 20 24 24 C 1.53880 * 110.02918 * 301.16971 * 20 9 7 25 25 H 0.97002 * 119.99897 * 4.12528 * 1 2 3 26 26 H 1.08994 * 109.47400 * 300.00674 * 12 10 9 27 27 H 1.09004 * 109.46712 * 60.00490 * 12 10 9 28 28 H 1.09005 * 109.54653 * 302.97879 * 15 13 12 29 29 H 1.08996 * 109.54514 * 63.24600 * 15 13 12 30 30 H 1.08993 * 109.52496 * 176.88094 * 16 15 13 31 31 H 1.08992 * 109.52136 * 297.01270 * 16 15 13 32 32 H 1.08998 * 109.48462 * 62.37753 * 17 16 15 33 33 H 1.09002 * 109.47883 * 182.40129 * 17 16 15 34 34 H 1.09006 * 109.47741 * 178.86203 * 19 18 17 35 35 H 1.08996 * 109.48131 * 58.82344 * 19 18 17 36 36 H 1.09002 * 110.01940 * 179.78002 * 20 9 7 37 37 H 1.08994 * 110.48774 * 335.78776 * 21 20 9 38 38 H 1.09007 * 110.48299 * 98.43235 * 21 20 9 39 39 H 1.09003 * 110.72236 * 279.57324 * 22 21 20 40 40 H 1.09003 * 110.92527 * 156.29962 * 22 21 20 41 41 H 1.09002 * 110.48589 * 203.40422 * 23 22 21 42 42 H 1.09002 * 110.59997 * 80.81858 * 23 22 21 43 43 H 1.08992 * 110.03313 * 238.56881 * 24 20 9 44 44 H 1.08997 * 110.03126 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2035 0.0005 8 1 3.0300 -1.2372 0.3503 9 7 1.3961 -2.3488 -0.4377 10 6 0.5966 -2.3128 -1.5222 11 8 0.4196 -1.2671 -2.1107 12 6 -0.0773 -3.5718 -2.0037 13 6 -0.9205 -3.2578 -3.2412 14 1 -1.6166 -2.4508 -3.0123 15 6 -1.7036 -4.5066 -3.6575 16 6 -2.4826 -4.2031 -4.9409 17 6 -1.5050 -3.7421 -6.0251 18 8 -0.7876 -2.5963 -5.5617 19 6 -0.0032 -2.8332 -4.3909 20 6 1.6102 -3.6120 0.2727 21 6 1.1733 -3.4707 1.7454 22 6 2.2137 -4.3078 2.5316 23 6 3.5318 -4.0174 1.7718 24 6 3.1091 -3.9599 0.2892 25 1 -0.4850 0.8379 -0.0604 26 1 0.6789 -4.3142 -2.2586 27 1 -0.7202 -3.9640 -1.2155 28 1 -1.0105 -5.3285 -3.8374 29 1 -2.3995 -4.7817 -2.8649 30 1 -2.9990 -5.1029 -5.2750 31 1 -3.2110 -3.4158 -4.7473 32 1 -0.8026 -4.5456 -6.2467 33 1 -2.0586 -3.4839 -6.9278 34 1 0.5250 -1.9201 -4.1163 35 1 0.7188 -3.6248 -4.5911 36 1 1.0467 -4.4112 -0.2088 37 1 1.2109 -2.4266 2.0560 38 1 0.1712 -3.8759 1.8866 39 1 1.9680 -5.3689 2.4872 40 1 2.2821 -3.9718 3.5663 41 1 4.2501 -4.8213 1.9328 42 1 3.9530 -3.0623 2.0857 43 1 3.2729 -4.9282 -0.1835 44 1 3.6771 -3.1887 -0.2309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193313357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = -92.779137 kcal Electronic energy + Delta-G solvation = -23735.927663 eV Core-core repulsion = 20459.663160 eV Total energy + Delta-G solvation = -3276.264504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41198 -38.48948 -36.68735 -34.03839 -33.16320 -31.80706 -31.22820 -28.06326 -27.35206 -26.80175 -24.67816 -24.30162 -22.19058 -20.12220 -19.91695 -19.71229 -18.81321 -16.31187 -15.92069 -15.90977 -15.65290 -14.91981 -14.69372 -14.47705 -14.25765 -13.98722 -13.55083 -13.25095 -13.05121 -12.72794 -12.35294 -12.13688 -11.80499 -11.49346 -11.33428 -11.03537 -10.93186 -10.83261 -10.70909 -10.60969 -10.49445 -10.47407 -10.39088 -10.28322 -10.13530 -10.03877 -9.86890 -9.72249 -9.06729 -8.65113 -7.91523 -7.00953 -6.02713 -3.74815 3.37710 3.43974 3.48122 4.24800 4.28099 4.44162 4.86825 5.01434 5.07321 5.15819 5.21438 5.24797 5.30707 5.42577 5.49109 5.53885 5.66509 5.75095 5.87442 5.91647 5.94168 6.03407 6.07149 6.09782 6.12928 6.15260 6.21181 6.25052 6.26339 6.33494 6.44067 6.46636 6.50578 6.62128 6.77823 6.84500 6.86671 6.97993 7.21783 7.59831 7.71598 8.34908 9.15425 9.27512 9.77927 10.39995 11.04816 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.006426 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.881969 B = 4356.543891 C = 5651.371831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.075 3.925 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.341 4.341 8 H 0.077 0.923 9 N -0.449 5.449 10 C 0.471 3.529 11 O -0.532 6.532 12 C -0.128 4.128 13 C -0.099 4.099 14 H 0.086 0.914 15 C -0.118 4.118 16 C -0.154 4.154 17 C 0.058 3.942 18 O -0.383 6.383 19 C 0.065 3.935 20 C 0.129 3.871 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -11.765 -2.628 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.170 5.170 10 C 0.258 3.742 11 O -0.410 6.410 12 C -0.169 4.169 13 C -0.119 4.119 14 H 0.104 0.896 15 C -0.156 4.156 16 C -0.192 4.192 17 C -0.019 4.019 18 O -0.302 6.302 19 C -0.011 4.011 20 C 0.024 3.976 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.676 -10.924 -2.969 11.341 hybrid contribution 0.259 0.351 0.307 0.533 sum -0.418 -10.573 -2.663 10.911 Atomic orbital electron populations 1.69902 1.06472 1.27423 1.42241 1.25062 0.94561 0.99041 0.94910 0.86406 0.79448 0.83191 0.78216 1.20491 1.21608 1.20083 1.18821 0.95884 0.85133 1.46907 0.90510 1.43437 1.44491 1.06227 1.22881 1.19831 0.83496 0.89121 0.81719 1.90492 1.62227 1.31923 1.56404 1.21619 0.99122 0.98669 0.97487 1.21437 0.98031 0.97557 0.94836 0.89585 1.21679 0.98931 0.97887 0.97082 1.22169 0.99021 1.01497 0.96503 1.22506 0.93865 0.89180 0.96327 1.87972 1.63137 1.34282 1.44782 1.22923 0.91833 1.03099 0.83224 1.21690 0.94450 0.88469 0.93021 1.22658 0.96771 1.02012 0.94925 1.22451 0.95946 0.99068 0.98596 1.22260 0.96806 1.00801 0.95637 1.22468 0.97538 1.00556 0.96421 0.92821 0.91240 0.90765 0.92268 0.91760 0.91531 0.91130 0.93841 0.89669 0.86225 0.94571 0.91539 0.89107 0.93063 0.92565 0.92371 0.92946 0.91625 0.92990 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.20 11.65 55.50 0.65 -23.56 16 2 C 0.07 2.07 4.27 -17.47 -0.07 2.00 16 3 Si 0.90 21.99 29.61 -169.99 -5.03 16.96 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.34 -9.01 7.44 -14.93 -0.11 -9.12 16 8 H 0.08 1.99 7.18 -52.48 -0.38 1.61 16 9 N -0.45 -10.70 2.47 -106.54 -0.26 -10.96 16 10 C 0.47 11.43 6.72 -10.98 -0.07 11.36 16 11 O -0.53 -14.99 11.52 5.54 0.06 -14.93 16 12 C -0.13 -2.40 3.49 -27.88 -0.10 -2.49 16 13 C -0.10 -1.78 2.03 -90.48 -0.18 -1.96 16 14 H 0.09 1.81 7.95 -51.93 -0.41 1.40 16 15 C -0.12 -1.64 5.31 -26.55 -0.14 -1.78 16 16 C -0.15 -1.95 6.14 -26.59 -0.16 -2.11 16 17 C 0.06 0.79 6.84 37.21 0.25 1.04 16 18 O -0.38 -6.91 10.77 -35.23 -0.38 -7.29 16 19 C 0.07 1.21 5.84 37.20 0.22 1.43 16 20 C 0.13 2.46 3.21 -66.81 -0.21 2.25 16 21 C -0.13 -2.31 6.42 -25.04 -0.16 -2.47 16 22 C -0.12 -1.81 6.91 -24.70 -0.17 -1.98 16 23 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 24 C -0.13 -2.21 6.19 -25.61 -0.16 -2.37 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.07 1.15 7.80 -51.93 -0.40 0.74 16 27 H 0.07 1.32 7.79 -51.93 -0.40 0.92 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.12 2.65 6.04 -51.93 -0.31 2.33 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.15 5.82 -51.93 -0.30 0.85 16 37 H 0.09 2.00 7.05 -51.93 -0.37 1.64 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.44 6.95 -51.93 -0.36 1.07 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -31.02 335.71 -8.73 -39.74 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.57 Total: 3.13 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.25 Total: -8.16 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.38 Total: -34.52 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.32 Total: -22.22 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.02 -8.73 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193313357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.036 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds