Wall clock time and date at job start Tue Mar 31 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99450 * 2 1 4 4 H 1.48498 * 109.47114 * 274.58702 * 3 2 1 5 5 H 1.48501 * 109.47495 * 34.59247 * 3 2 1 6 6 H 1.48501 * 109.46832 * 154.59198 * 3 2 1 7 7 C 1.38940 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00222 * 24.66580 * 7 2 1 9 9 N 1.37098 * 120.00173 * 204.67019 * 7 2 1 10 10 C 1.34771 * 120.00224 * 49.34007 * 9 7 2 11 11 O 1.21296 * 119.99732 * 185.01485 * 10 9 7 12 12 C 1.50696 * 120.00110 * 5.01762 * 10 9 7 13 13 C 1.52999 * 109.47120 * 172.28467 * 12 10 9 14 14 H 1.09002 * 109.52258 * 55.12767 * 13 12 10 15 15 C 1.53180 * 109.57290 * 175.28230 * 13 12 10 16 16 C 1.53204 * 109.04112 * 176.91657 * 15 13 12 17 17 C 1.53086 * 109.15524 * 303.03213 * 16 15 13 18 18 O 1.42900 * 109.42695 * 57.59984 * 17 16 15 19 19 C 1.42907 * 114.09812 * 298.84017 * 18 17 16 20 20 C 1.46505 * 119.99728 * 229.34546 * 9 7 2 21 21 C 1.54266 * 110.03289 * 53.92913 * 20 9 7 22 22 C 1.54962 * 104.15945 * 217.13610 * 21 20 9 23 23 C 1.54890 * 102.77682 * 37.89014 * 22 21 20 24 24 C 1.53873 * 110.03181 * 296.71207 * 20 9 7 25 25 H 0.96995 * 120.00195 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.46723 * 52.29094 * 12 10 9 27 27 H 1.08992 * 109.47170 * 292.28808 * 12 10 9 28 28 H 1.09002 * 109.54689 * 296.78913 * 15 13 12 29 29 H 1.09000 * 109.54188 * 56.96974 * 15 13 12 30 30 H 1.08997 * 109.53770 * 183.11745 * 16 15 13 31 31 H 1.09003 * 109.51800 * 62.92655 * 16 15 13 32 32 H 1.09007 * 109.48104 * 297.61322 * 17 16 15 33 33 H 1.09003 * 109.48405 * 177.59032 * 17 16 15 34 34 H 1.09002 * 109.48040 * 181.13818 * 19 18 17 35 35 H 1.08994 * 109.48194 * 301.17139 * 19 18 17 36 36 H 1.08998 * 110.01473 * 175.32450 * 20 9 7 37 37 H 1.09002 * 110.48893 * 335.78547 * 21 20 9 38 38 H 1.08999 * 110.48583 * 98.42886 * 21 20 9 39 39 H 1.09007 * 110.72243 * 279.57242 * 22 21 20 40 40 H 1.09006 * 110.76340 * 156.22584 * 22 21 20 41 41 H 1.08999 * 110.48371 * 203.40172 * 23 22 21 42 42 H 1.09000 * 110.48515 * 80.76397 * 23 22 21 43 43 H 1.08997 * 110.03574 * 238.57009 * 24 20 9 44 44 H 1.09002 * 110.03658 * 359.95308 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.3985 2.1025 -1.3956 5 1 1.4973 2.6228 0.7949 6 1 3.5907 1.4143 0.6007 7 6 2.0089 -1.2032 0.0005 8 1 1.5430 -2.0961 -0.3894 9 7 3.2861 -1.2571 0.4961 10 6 3.5637 -0.7249 1.7028 11 8 4.7087 -0.6910 2.1017 12 6 2.4517 -0.1719 2.5563 13 6 3.0010 0.1904 3.9376 14 1 3.8423 0.8746 3.8270 15 6 1.9017 0.8608 4.7674 16 6 2.4409 1.1483 6.1722 17 6 2.9277 -0.1599 6.8009 18 8 3.9262 -0.7468 5.9640 19 6 3.4660 -1.0808 4.6529 20 6 4.3490 -1.8932 -0.2861 21 6 4.4127 -1.2703 -1.6959 22 6 4.7441 -2.4661 -2.6241 23 6 3.9248 -3.6223 -1.9989 24 6 4.0394 -3.3881 -0.4784 25 1 -0.4850 0.8400 -0.0004 26 1 1.6678 -0.9220 2.6624 27 1 2.0399 0.7197 2.0837 28 1 1.6051 1.7958 4.2922 29 1 1.0399 0.1968 4.8352 30 1 1.6482 1.5750 6.7867 31 1 3.2709 1.8519 6.1068 32 1 2.0887 -0.8483 6.9033 33 1 3.3518 0.0449 7.7839 34 1 4.2781 -1.5391 4.0884 35 1 2.6342 -1.7811 4.7271 36 1 5.3073 -1.7724 0.2192 37 1 3.4503 -0.8345 -1.9643 38 1 5.2002 -0.5182 -1.7455 39 1 5.8105 -2.6903 -2.5984 40 1 4.4148 -2.2666 -3.6439 41 1 4.3564 -4.5858 -2.2701 42 1 2.8834 -3.5669 -2.3161 43 1 4.8477 -3.9928 -0.0674 44 1 3.0986 -3.6406 0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193313365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:46 Heat of formation + Delta-G solvation = -96.498787 kcal Electronic energy + Delta-G solvation = -23912.410589 eV Core-core repulsion = 20635.984789 eV Total energy + Delta-G solvation = -3276.425800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.68250 -38.69263 -36.88613 -34.19481 -33.89406 -31.93611 -31.56591 -28.10091 -28.01734 -26.32679 -24.66627 -24.52284 -22.44135 -20.14263 -20.04407 -19.37976 -19.22901 -16.91128 -16.04261 -15.95365 -15.64520 -15.47558 -14.80721 -14.52617 -14.17817 -14.10046 -13.80665 -13.57350 -13.04569 -12.68643 -12.54091 -12.35450 -12.24840 -11.89916 -11.58433 -11.13445 -11.01215 -10.90042 -10.82736 -10.65537 -10.59700 -10.50582 -10.35496 -10.30212 -10.10384 -10.06224 -9.86490 -9.80797 -9.08366 -8.99566 -8.53977 -7.56852 -6.56710 -4.21907 3.05011 3.17830 3.29323 3.75506 4.07351 4.19818 4.43126 4.81738 5.03569 5.10231 5.14462 5.23828 5.25882 5.32010 5.45794 5.52165 5.66659 5.76793 5.94712 5.96474 5.99005 6.07805 6.11410 6.14567 6.16970 6.19137 6.20973 6.25772 6.31480 6.40671 6.42911 6.45911 6.54985 6.58832 6.67432 6.81838 6.88156 6.93979 7.06826 7.53798 7.63429 7.79123 8.46558 8.94454 9.29959 9.74206 10.52947 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.006471 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.212684 B = 4325.777924 C = 5167.995563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.080 3.920 3 Si 0.845 3.155 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.465 5.465 10 C 0.491 3.509 11 O -0.595 6.595 12 C -0.114 4.114 13 C -0.108 4.108 14 H 0.081 0.919 15 C -0.120 4.120 16 C -0.154 4.154 17 C 0.059 3.941 18 O -0.385 6.385 19 C 0.068 3.932 20 C 0.129 3.871 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.126 4.126 25 H 0.275 0.725 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -1.255 4.277 5.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.128 4.128 3 Si 0.670 3.330 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.468 4.468 8 H 0.117 0.883 9 N -0.186 5.186 10 C 0.281 3.719 11 O -0.480 6.480 12 C -0.154 4.154 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.157 4.157 16 C -0.191 4.191 17 C -0.018 4.018 18 O -0.303 6.303 19 C -0.008 4.008 20 C 0.025 3.975 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.165 4.165 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.285 -1.198 4.520 5.714 hybrid contribution -0.226 1.218 -0.427 1.311 sum 3.059 0.020 4.092 5.109 Atomic orbital electron populations 1.69783 1.06214 1.28184 1.44240 1.25546 0.94939 0.98009 0.94337 0.87307 0.82376 0.84504 0.78828 1.20469 1.20536 1.17779 1.18774 0.87208 0.96409 1.44401 0.88347 1.43846 1.08436 1.52587 1.13717 1.20501 0.89346 0.80113 0.81906 1.90512 1.22455 1.61714 1.73348 1.21517 0.98263 1.02325 0.93280 1.21573 0.98297 0.98546 0.94285 0.90088 1.21670 0.98184 1.01073 0.94808 1.22178 1.01192 0.98638 0.97121 1.22521 0.91975 0.93476 0.93839 1.87927 1.36950 1.80949 1.24498 1.22802 1.00592 0.95230 0.82222 1.21659 0.92409 0.91706 0.91764 1.22686 1.02444 0.97078 0.94739 1.22421 0.99107 0.95842 0.98438 1.22268 1.00344 0.97242 0.95631 1.22399 1.01750 0.96307 0.96007 0.91433 0.88448 0.90606 0.91726 0.91573 0.91313 0.91281 0.93548 0.89576 0.87218 0.93827 0.89954 0.89467 0.92897 0.92303 0.92167 0.92756 0.91432 0.92745 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.15 13.96 55.50 0.77 -21.38 16 2 C 0.08 2.01 4.15 -17.47 -0.07 1.94 16 3 Si 0.84 20.03 24.74 -169.99 -4.21 15.82 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.25 -6.32 5.86 56.52 0.33 -5.99 16 7 C -0.34 -8.37 7.20 -14.94 -0.11 -8.48 16 8 H 0.10 2.57 7.60 -52.49 -0.40 2.17 16 9 N -0.47 -10.77 1.91 -106.55 -0.20 -10.97 16 10 C 0.49 11.59 4.95 -10.99 -0.05 11.54 16 11 O -0.60 -14.92 13.65 5.54 0.08 -14.84 16 12 C -0.11 -2.46 3.34 -27.89 -0.09 -2.55 16 13 C -0.11 -2.04 2.03 -90.48 -0.18 -2.22 16 14 H 0.08 1.67 7.85 -51.93 -0.41 1.26 16 15 C -0.12 -1.89 5.32 -26.53 -0.14 -2.03 16 16 C -0.15 -2.05 6.14 -26.58 -0.16 -2.21 16 17 C 0.06 0.80 6.84 37.20 0.25 1.06 16 18 O -0.38 -6.72 10.77 -35.23 -0.38 -7.09 16 19 C 0.07 1.24 5.84 37.20 0.22 1.46 16 20 C 0.13 2.64 3.29 -66.81 -0.22 2.42 16 21 C -0.13 -2.48 6.41 -25.03 -0.16 -2.64 16 22 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 23 C -0.12 -1.82 6.83 -25.07 -0.17 -2.00 16 24 C -0.13 -2.25 6.27 -25.61 -0.16 -2.41 16 25 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.10 2.10 7.96 -51.92 -0.41 1.69 16 27 H 0.08 1.71 3.62 -51.93 -0.19 1.53 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.11 2.24 6.29 -51.93 -0.33 1.91 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.77 6.95 -51.93 -0.36 1.41 16 37 H 0.09 1.84 6.88 -51.93 -0.36 1.48 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.43 7.20 -51.93 -0.37 1.05 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -27.41 329.12 -7.73 -35.14 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.53 Total: 6.52 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.23 Total: -8.15 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.57 Total: -32.35 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.30 Total: -21.94 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.21 Total: 15.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.41 -7.73 -35.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193313365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.360 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds