Wall clock time and date at job start Tue Mar 31 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.46997 * 2 1 4 4 C 1.53006 * 109.47022 * 119.99884 * 2 1 3 5 5 C 1.52992 * 109.46941 * 59.99888 * 4 2 1 6 6 C 1.53001 * 109.47140 * 60.00193 * 5 4 2 7 7 C 1.52996 * 109.47049 * 299.99738 * 6 5 4 8 8 C 1.52997 * 109.47518 * 240.00016 * 2 1 3 9 9 H 1.08991 * 109.47346 * 180.02562 * 8 2 1 10 10 C 1.50696 * 109.47176 * 59.99891 * 8 2 1 11 11 O 1.21289 * 119.99930 * 275.51843 * 10 8 2 12 12 N 1.34772 * 120.00321 * 95.51653 * 10 8 2 13 13 C 1.47073 * 136.05326 * 4.61484 * 12 10 8 14 14 C 1.53757 * 87.88548 * 152.96372 * 13 12 10 15 15 O 1.42904 * 114.39711 * 272.67739 * 14 13 12 16 16 C 1.50703 * 114.26830 * 139.79284 * 14 13 12 17 17 H 1.08004 * 119.99627 * 266.47770 * 16 14 13 18 18 C 1.37874 * 119.99976 * 86.46874 * 16 14 13 19 19 N 1.31514 * 120.00019 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99770 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47099 * 90.00759 * 20 18 16 22 22 H 1.48510 * 109.47045 * 210.00404 * 20 18 16 23 23 H 1.48494 * 109.47288 * 330.00348 * 20 18 16 24 24 C 1.47063 * 136.05977 * 184.98594 * 12 10 8 25 25 H 1.09000 * 109.47560 * 300.00296 * 1 2 3 26 26 H 1.09001 * 109.47387 * 59.99962 * 1 2 3 27 27 H 1.09007 * 109.47429 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46734 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46982 * 299.99677 * 3 2 1 30 30 H 1.09003 * 109.46953 * 59.99941 * 3 2 1 31 31 H 1.08997 * 109.47118 * 180.02562 * 4 2 1 32 32 H 1.09003 * 109.46756 * 299.99755 * 4 2 1 33 33 H 1.09001 * 109.46784 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.47720 * 300.00250 * 5 4 2 35 35 H 1.09003 * 109.47329 * 179.97438 * 6 5 4 36 36 H 1.09007 * 109.46893 * 59.99993 * 6 5 4 37 37 H 1.08997 * 109.47120 * 299.99521 * 7 6 5 38 38 H 1.09000 * 109.46810 * 179.97438 * 7 6 5 39 39 H 1.08994 * 113.46645 * 267.69430 * 13 12 10 40 40 H 1.08992 * 113.46464 * 38.13731 * 13 12 10 41 41 H 0.96707 * 113.99530 * 273.59211 * 15 14 13 42 42 H 0.97002 * 119.99981 * 179.97438 * 19 18 16 43 43 H 1.08997 * 113.47312 * 321.86144 * 24 12 10 44 44 H 1.09001 * 113.47176 * 92.30885 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0399 -2.8850 0.0001 7 6 1.5299 -2.1637 -1.2491 8 6 2.0400 -0.7212 -1.2492 9 1 3.1299 -0.7216 -1.2489 10 6 1.5377 -0.0109 -2.4797 11 8 0.4343 -0.2614 -2.9165 12 7 2.3145 0.9028 -3.0947 13 6 3.6871 1.4060 -2.9339 14 6 3.6774 1.7457 -4.4334 15 8 4.0825 0.6716 -5.2846 16 6 4.3355 3.0575 -4.7757 17 1 3.7415 3.9565 -4.8495 18 6 5.6958 3.1100 -4.9943 19 7 6.4189 2.0152 -4.9048 20 14 6.5115 4.7362 -5.4178 21 1 6.9371 5.4167 -4.1684 22 1 7.6987 4.4862 -6.2744 23 1 5.5475 5.5984 -6.1474 24 6 2.1606 1.8398 -4.2176 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -0.2073 2.1393 33 1 1.8928 -2.6773 2.1396 34 1 0.4399 -2.1637 1.2492 35 1 1.6769 -3.9128 0.0003 36 1 3.1300 -2.8850 0.0002 37 1 0.4400 -2.1638 -1.2492 38 1 1.8937 -2.6774 -2.1391 39 1 3.7551 2.2833 -2.2906 40 1 4.4052 0.6306 -2.6676 41 1 5.0386 0.6150 -5.4184 42 1 7.3759 2.0520 -5.0590 43 1 1.5784 1.4341 -5.0449 44 1 1.8263 2.8316 -3.9128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193984700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:26 Heat of formation + Delta-G solvation = -73.719298 kcal Electronic energy + Delta-G solvation = -23889.929243 eV Core-core repulsion = 20614.491236 eV Total energy + Delta-G solvation = -3275.438007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47725 -38.74958 -36.85639 -34.00943 -33.18143 -32.18825 -31.03768 -28.68161 -27.15059 -26.51657 -25.29790 -25.05318 -22.89709 -21.12391 -20.19454 -18.67056 -17.80676 -17.32304 -16.31062 -15.59899 -15.30241 -15.12513 -14.73612 -14.27057 -14.16867 -13.90001 -13.47350 -13.07304 -12.95302 -12.78247 -12.44073 -12.26795 -11.94225 -11.82592 -11.73129 -11.55935 -11.37034 -11.31581 -11.10477 -11.02939 -10.95915 -10.81014 -10.49667 -10.37802 -10.24074 -10.04803 -9.95880 -9.48740 -9.01606 -8.75532 -8.34673 -7.77501 -6.40459 -4.50761 3.13450 3.21901 3.24742 3.27278 3.63397 4.17685 4.66225 4.69788 4.78489 4.83509 5.12756 5.18317 5.27357 5.36096 5.42336 5.51297 5.57634 5.62243 5.71566 5.81928 5.84680 5.91729 5.97569 6.02397 6.07479 6.10422 6.14759 6.17928 6.21582 6.24791 6.38757 6.43280 6.44619 6.47033 6.57308 6.63842 6.69762 6.74314 7.12528 7.62751 7.81324 8.52081 8.60390 8.87081 9.20763 9.49914 10.66100 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.004704 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.618020 B = 5951.111393 C = 6066.149506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.105 4.105 8 C -0.089 4.089 9 H 0.084 0.916 10 C 0.544 3.456 11 O -0.563 6.563 12 N -0.633 5.633 13 C 0.074 3.926 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.104 3.896 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.393 0.607 42 H 0.274 0.726 43 H 0.064 0.936 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -4.364 11.575 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.049 4.049 3 C -0.205 4.205 4 C -0.143 4.143 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.142 4.142 8 C -0.110 4.110 9 H 0.102 0.898 10 C 0.334 3.666 11 O -0.444 6.444 12 N -0.365 5.365 13 C -0.049 4.049 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.571 4.571 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.018 4.018 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.716 -4.834 11.399 13.637 hybrid contribution 1.272 0.964 -0.103 1.599 sum -4.444 -3.870 11.296 12.741 Atomic orbital electron populations 1.22008 0.94148 1.02282 1.01806 1.20362 0.96213 0.94993 0.93287 1.21987 1.01328 0.95153 1.01995 1.21582 1.00628 0.95312 0.96775 1.21591 1.01112 0.95603 0.97575 1.21536 1.00795 0.98681 0.94496 1.21437 1.01978 0.93120 0.97714 1.21237 1.01401 0.95661 0.92689 0.89815 1.19945 0.83866 0.79147 0.83652 1.90605 1.21109 1.65980 1.66674 1.49777 1.16602 1.36418 1.33726 1.24216 0.80453 0.97030 1.03188 1.19588 0.88902 0.86536 0.85201 1.86052 1.31787 1.51711 1.68874 1.21446 0.93011 0.93766 1.48877 0.90995 1.25070 0.97070 0.97500 0.93378 1.69266 1.07631 1.27653 1.49382 0.86326 0.78881 0.82712 0.78584 1.20296 1.20882 1.19512 1.23289 0.99402 0.91505 0.87604 0.93236 0.91750 0.92014 0.92275 0.92137 0.92685 0.91835 0.91850 0.92268 0.91629 0.91958 0.91998 0.90516 0.91899 0.90267 0.92019 0.75036 0.91600 0.91723 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 7.36 37.15 0.27 -1.73 16 2 C -0.05 -0.65 0.54 -154.51 -0.08 -0.74 16 3 C -0.15 -2.05 7.98 37.16 0.30 -1.75 16 4 C -0.11 -1.17 4.73 -26.73 -0.13 -1.30 16 5 C -0.12 -1.25 5.65 -26.73 -0.15 -1.40 16 6 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 7 C -0.10 -1.52 4.59 -26.73 -0.12 -1.64 16 8 C -0.09 -1.41 1.77 -91.77 -0.16 -1.58 16 9 H 0.08 1.36 7.60 -51.93 -0.39 0.96 16 10 C 0.54 10.95 5.38 -10.99 -0.06 10.89 16 11 O -0.56 -12.81 15.67 5.55 0.09 -12.72 16 12 N -0.63 -13.30 3.04 -185.03 -0.56 -13.86 16 13 C 0.07 1.58 7.41 -8.36 -0.06 1.52 16 14 C 0.24 5.75 1.58 -91.12 -0.14 5.60 16 15 O -0.57 -14.89 13.55 -35.23 -0.48 -15.37 16 16 C -0.53 -13.25 8.70 -34.44 -0.30 -13.55 16 17 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 18 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 19 N -0.90 -22.64 11.01 55.43 0.61 -22.03 16 20 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C 0.10 2.30 8.03 -8.50 -0.07 2.23 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.06 6.44 -51.93 -0.33 0.73 16 27 H 0.06 0.82 4.81 -51.93 -0.25 0.57 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.97 6.78 -51.93 -0.35 0.62 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.08 1.16 6.14 -51.93 -0.32 0.84 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 40 H 0.06 1.32 7.96 -51.93 -0.41 0.91 16 41 H 0.39 10.32 6.32 45.56 0.29 10.60 16 42 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 43 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -27.32 335.41 -8.00 -35.32 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.72 Total: 12.61 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.96 Total: -3.24 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.05 Total: -35.89 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.39 Total: -28.09 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.32 -8.00 -35.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193984700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.401 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds