Wall clock time and date at job start Tue Mar 31 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48504 * 109.46962 * 269.99365 * 3 2 1 5 5 H 1.48501 * 109.47362 * 29.99491 * 3 2 1 6 6 H 1.48503 * 109.46892 * 149.99952 * 3 2 1 7 7 C 1.37877 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99928 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52615 * 299.92309 * 9 7 2 11 11 C 1.53046 * 109.49551 * 60.00313 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31590 * 11 9 7 13 13 C 1.53186 * 109.31207 * 298.63381 * 12 11 9 14 14 N 1.46919 * 108.77954 * 54.63337 * 13 12 11 15 15 C 1.34778 * 120.63015 * 126.36862 * 14 13 12 16 16 O 1.21285 * 119.99937 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99881 * 0.02562 * 15 14 13 18 18 C 1.53005 * 109.46746 * 179.97438 * 17 15 14 19 19 C 1.53175 * 109.54562 * 294.82144 * 18 17 15 20 20 C 1.53103 * 109.15652 * 183.24262 * 19 18 17 21 21 O 1.42902 * 109.48625 * 57.47631 * 20 19 18 22 22 C 1.42904 * 114.09922 * 298.89023 * 21 20 19 23 23 C 1.53095 * 109.41786 * 61.15398 * 22 21 20 24 24 C 1.46927 * 118.74179 * 306.39646 * 14 13 12 25 25 H 0.97006 * 119.99508 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46296 * 61.29678 * 11 9 7 27 27 H 1.09000 * 109.45696 * 301.33234 * 11 9 7 28 28 H 1.09004 * 109.49895 * 58.58445 * 12 11 9 29 29 H 1.08995 * 109.49246 * 178.67798 * 12 11 9 30 30 H 1.09002 * 109.58478 * 174.42871 * 13 12 11 31 31 H 1.09004 * 109.58514 * 294.70524 * 13 12 11 32 32 H 1.08999 * 109.46940 * 299.99847 * 17 15 14 33 33 H 1.08997 * 109.46815 * 60.00399 * 17 15 14 34 34 H 1.08998 * 109.54218 * 55.00337 * 18 17 15 35 35 H 1.08993 * 109.52237 * 303.06078 * 19 18 17 36 36 H 1.09001 * 109.51895 * 63.24761 * 19 18 17 37 37 H 1.09003 * 109.40390 * 297.49677 * 20 19 18 38 38 H 1.08994 * 109.49177 * 177.50897 * 20 19 18 39 39 H 1.09002 * 109.47842 * 301.17342 * 22 21 20 40 40 H 1.09003 * 109.49103 * 181.14812 * 22 21 20 41 41 H 1.08998 * 109.52275 * 182.48397 * 23 22 21 42 42 H 1.08999 * 109.51495 * 62.29835 * 23 22 21 43 43 H 1.09000 * 109.58699 * 173.39102 * 24 14 13 44 44 H 1.08997 * 109.58189 * 293.67304 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5582 0.8907 11 6 0.3714 -2.5811 -1.2493 12 6 -0.4190 -3.8915 -1.2337 13 6 0.5569 -5.0721 -1.2511 14 7 1.4997 -4.9229 -0.1342 15 6 1.6763 -5.9216 0.7534 16 8 2.4572 -5.7859 1.6714 17 6 0.9034 -7.2068 0.6052 18 6 1.2878 -8.1660 1.7336 19 6 2.7596 -8.5646 1.5883 20 6 3.1129 -9.5861 2.6727 21 8 2.2464 -10.7171 2.5626 22 6 0.8617 -10.4106 2.7384 23 6 0.4174 -9.4240 1.6554 24 6 2.2459 -3.6640 -0.0029 25 1 -0.4850 0.8401 -0.0004 26 1 1.0003 -2.5469 -2.1388 27 1 -0.3211 -1.7394 -1.2617 28 1 -1.0296 -3.9375 -0.3319 29 1 -1.0626 -3.9384 -2.1121 30 1 0.0040 -6.0049 -1.1406 31 1 1.1031 -5.0808 -2.1944 32 1 -0.1648 -6.9962 0.6550 33 1 1.1394 -7.6639 -0.3558 34 1 1.1358 -7.6767 2.6957 35 1 2.9217 -9.0076 0.6057 36 1 3.3888 -7.6815 1.6990 37 1 2.9907 -9.1288 3.6546 38 1 4.1470 -9.9068 2.5472 39 1 0.7101 -9.9642 3.7211 40 1 0.2740 -11.3253 2.6601 41 1 -0.6269 -9.1550 1.8140 42 1 0.5307 -9.8849 0.6742 43 1 2.8073 -3.6678 0.9314 44 1 2.9334 -3.5577 -0.8420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259688928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:06 Heat of formation + Delta-G solvation = -107.423912 kcal Electronic energy + Delta-G solvation = -22928.874379 eV Core-core repulsion = 19651.974830 eV Total energy + Delta-G solvation = -3276.899549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10114 -38.98959 -36.86458 -34.56459 -33.51730 -31.39578 -31.13535 -30.45809 -28.76400 -25.16482 -24.77286 -23.63480 -23.06087 -21.69974 -20.25353 -19.66574 -18.21685 -16.90717 -16.27836 -16.11069 -15.96073 -15.54124 -15.15459 -14.72982 -14.63533 -14.08735 -13.75993 -13.50095 -13.18149 -12.90133 -12.67400 -12.49586 -12.29454 -12.09846 -12.00583 -11.73840 -11.36289 -11.04035 -10.99123 -10.84531 -10.75532 -10.61194 -10.37584 -10.28112 -9.98115 -9.83476 -9.64812 -9.47230 -9.15660 -8.84190 -8.40780 -7.90559 -6.04262 -4.11430 3.04763 3.27936 3.34909 3.38428 3.53373 3.79480 4.40542 4.59310 4.63498 4.73707 4.92084 5.02414 5.19214 5.24743 5.29038 5.33420 5.39004 5.46411 5.50962 5.60836 5.63293 5.74768 5.76593 5.79411 5.83266 6.01975 6.10042 6.27220 6.30699 6.34051 6.38603 6.45953 6.64327 6.78704 6.95828 7.10899 7.14508 7.31004 7.66629 7.89417 8.01089 8.05234 8.35266 8.65277 8.92322 9.53613 11.01209 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033794 B = 0.003576 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.347915 B = 7829.050850 C = 8287.318269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.508 3.492 16 O -0.550 6.550 17 C -0.134 4.134 18 C -0.073 4.073 19 C -0.155 4.155 20 C 0.062 3.938 21 O -0.388 6.388 22 C 0.062 3.938 23 C -0.152 4.152 24 C 0.117 3.883 25 H 0.260 0.740 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 -17.528 -0.317 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.336 5.336 15 C 0.296 3.704 16 O -0.430 6.430 17 C -0.174 4.174 18 C -0.092 4.092 19 C -0.192 4.192 20 C -0.014 4.014 21 O -0.307 6.307 22 C -0.015 4.015 23 C -0.190 4.190 24 C -0.004 4.004 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.872 -17.502 0.125 17.525 hybrid contribution 0.137 1.347 -0.184 1.367 sum -0.735 -16.155 -0.059 16.172 Atomic orbital electron populations 1.69876 1.05904 1.26479 1.50540 1.24940 0.94865 0.99103 0.94921 0.86575 0.79935 0.83314 0.78080 1.20682 1.21230 1.19842 1.21082 0.92997 0.90307 1.50907 0.92491 1.18966 0.92950 0.91211 0.94758 0.95330 1.21633 0.99467 0.95379 0.98582 1.22005 0.97655 0.96741 1.00941 1.21734 0.91377 0.99023 0.89290 1.48333 1.42045 1.16115 1.27099 1.20526 0.82977 0.85028 0.81854 1.90614 1.38066 1.81599 1.32684 1.21739 1.01079 0.94014 1.00594 1.20930 0.95086 0.94068 0.99101 1.22357 0.97141 1.00422 0.99322 1.22590 0.93947 0.86892 0.98019 1.87893 1.16550 1.33151 1.93131 1.22536 0.82657 0.98952 0.97350 1.22271 0.99913 0.96297 1.00479 1.21980 0.95055 0.81993 1.01402 0.92975 0.94601 0.88634 0.92415 0.92475 0.91152 0.91981 0.89093 0.89332 0.90239 0.91856 0.88579 0.93158 0.89101 0.93257 0.89123 0.90846 0.91038 0.90345 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.31 55.43 0.63 -24.20 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.88 8.56 -34.44 -0.29 -14.17 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.49 4.96 -26.68 -0.13 -2.63 16 12 C -0.14 -2.35 6.08 -26.61 -0.16 -2.51 16 13 C 0.11 1.63 6.34 -3.72 -0.02 1.61 16 14 N -0.60 -10.89 2.97 -172.77 -0.51 -11.41 16 15 C 0.51 8.74 7.44 -10.98 -0.08 8.66 16 16 O -0.55 -11.18 13.40 5.55 0.07 -11.11 16 17 C -0.13 -1.66 3.53 -27.88 -0.10 -1.76 16 18 C -0.07 -0.87 1.92 -90.43 -0.17 -1.04 16 19 C -0.15 -1.91 5.13 -26.59 -0.14 -2.05 16 20 C 0.06 0.70 6.84 37.21 0.25 0.96 16 21 O -0.39 -4.63 10.77 -35.23 -0.38 -5.01 16 22 C 0.06 0.59 6.84 37.21 0.25 0.85 16 23 C -0.15 -1.43 5.43 -26.59 -0.14 -1.58 16 24 C 0.12 2.50 5.66 -3.71 -0.02 2.48 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 2.41 6.04 -51.93 -0.31 2.09 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 33 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 34 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.42 6.05 -51.93 -0.31 1.10 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.81 7.00 -51.93 -0.36 1.45 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -29.83 336.10 -8.77 -38.60 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.56 Total: 0.84 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.06 Total: -8.78 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.11 Total: -35.61 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.30 Total: -16.12 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.83 -8.77 -38.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259688928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.825 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds