Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48503 * 109.47324 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47393 * 300.00153 * 3 2 1 6 6 H 1.48502 * 109.47498 * 60.00393 * 3 2 1 7 7 C 1.37876 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99872 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.49671 * 60.07153 * 9 7 2 11 11 C 1.53041 * 109.50096 * 300.00497 * 9 7 2 12 12 C 1.53041 * 109.53878 * 178.64840 * 11 9 7 13 13 C 1.53194 * 109.31182 * 61.36234 * 12 11 9 14 14 N 1.46926 * 108.77757 * 305.36758 * 13 12 11 15 15 C 1.34777 * 120.62694 * 233.58761 * 14 13 12 16 16 O 1.21278 * 119.99854 * 180.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 359.97438 * 15 14 13 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.53177 * 109.54206 * 294.55171 * 18 17 15 20 20 C 1.53089 * 109.16292 * 183.15272 * 19 18 17 21 21 O 1.42905 * 109.41142 * 57.61541 * 20 19 18 22 22 C 1.42898 * 114.09508 * 298.83532 * 21 20 19 23 23 C 1.53088 * 109.41375 * 61.16448 * 22 21 20 24 24 C 1.46922 * 118.74006 * 53.85543 * 14 13 12 25 25 H 0.96994 * 120.00303 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.45960 * 58.62768 * 11 9 7 27 27 H 1.08993 * 109.45773 * 298.66743 * 11 9 7 28 28 H 1.08997 * 109.49616 * 301.41433 * 12 11 9 29 29 H 1.08999 * 109.49860 * 181.31322 * 12 11 9 30 30 H 1.09004 * 109.58391 * 185.57690 * 13 12 11 31 31 H 1.09005 * 109.69947 * 65.22281 * 13 12 11 32 32 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 33 33 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 34 34 H 1.08992 * 109.54667 * 54.82005 * 18 17 15 35 35 H 1.08994 * 109.52887 * 303.06505 * 19 18 17 36 36 H 1.09003 * 109.51897 * 63.25246 * 19 18 17 37 37 H 1.08999 * 109.48334 * 297.62945 * 20 19 18 38 38 H 1.09001 * 109.48104 * 177.59598 * 20 19 18 39 39 H 1.08994 * 109.48527 * 301.17610 * 22 21 20 40 40 H 1.09004 * 109.48923 * 181.14841 * 22 21 20 41 41 H 1.09001 * 109.52362 * 182.48411 * 23 22 21 42 42 H 1.09001 * 109.57697 * 62.32416 * 23 22 21 43 43 H 1.09002 * 109.58436 * 65.92922 * 24 14 13 44 44 H 1.09002 * 109.58650 * 186.35082 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5577 -0.8908 11 6 0.3714 -2.5811 1.2491 12 6 -0.4195 -3.8912 1.2331 13 6 0.5560 -5.0723 1.2501 14 7 1.4989 -4.9229 0.1332 15 6 1.6758 -5.9217 -0.7542 16 8 2.4575 -5.7864 -1.6716 17 6 0.9032 -7.2071 -0.6060 18 6 1.2878 -8.1663 -1.7342 19 6 0.8343 -7.5858 -3.0772 20 6 1.1525 -8.5872 -4.1906 21 8 0.5064 -9.8306 -3.9100 22 6 0.9262 -10.4437 -2.6894 23 6 0.5990 -9.5169 -1.5157 24 6 2.2497 -3.6665 0.0057 25 1 -0.4850 0.8400 0.0004 26 1 -0.3207 -1.7392 1.2618 27 1 1.0003 -2.5475 2.1387 28 1 -1.0300 -3.9366 0.3312 29 1 -1.0632 -3.9383 2.1114 30 1 0.0027 -6.0048 1.1390 31 1 1.1042 -5.0825 2.1922 32 1 -0.1652 -6.9967 -0.6559 33 1 1.1390 -7.6640 0.3552 34 1 2.3688 -8.3054 -1.7420 35 1 -0.2394 -7.4003 -3.0500 36 1 1.3617 -6.6509 -3.2666 37 1 2.2302 -8.7413 -4.2439 38 1 0.7933 -8.1978 -5.1433 39 1 2.0009 -10.6222 -2.7230 40 1 0.4041 -11.3918 -2.5604 41 1 0.9580 -9.9631 -0.5882 42 1 -0.4795 -9.3703 -1.4557 43 1 2.9329 -3.5620 0.8485 44 1 2.8144 -3.6713 -0.9267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259688932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -107.399127 kcal Electronic energy + Delta-G solvation = -22985.112904 eV Core-core repulsion = 19708.214430 eV Total energy + Delta-G solvation = -3276.898474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09261 -38.97648 -36.85198 -34.55585 -33.51240 -31.39474 -31.11364 -30.43742 -28.75291 -25.16385 -24.76819 -23.61240 -23.04591 -21.69782 -20.27517 -19.61580 -18.23823 -16.90108 -16.28214 -16.08751 -15.95373 -15.46498 -15.20253 -14.72279 -14.56386 -14.13786 -13.80636 -13.48964 -13.12039 -12.83560 -12.67712 -12.53841 -12.24420 -12.08094 -12.00203 -11.77641 -11.35046 -11.04903 -10.98834 -10.85498 -10.71652 -10.60174 -10.35506 -10.27634 -9.97953 -9.80772 -9.62526 -9.46255 -9.18636 -8.82707 -8.41079 -7.89951 -6.04066 -4.11204 3.04851 3.27210 3.35508 3.39351 3.53586 3.81646 4.40751 4.59412 4.65366 4.74345 4.93437 5.03460 5.20583 5.24637 5.30385 5.31510 5.43147 5.45990 5.51729 5.61349 5.64659 5.74552 5.76723 5.80133 5.86331 6.03752 6.10556 6.30680 6.31515 6.35896 6.39849 6.46014 6.64210 6.78502 6.95438 7.13146 7.14930 7.31279 7.67045 7.89609 8.01204 8.05389 8.35594 8.65406 8.92784 9.53916 11.01414 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030344 B = 0.003699 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.542850 B = 7567.009220 C = 7979.585066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.508 3.492 16 O -0.551 6.551 17 C -0.135 4.135 18 C -0.072 4.072 19 C -0.156 4.156 20 C 0.062 3.938 21 O -0.388 6.388 22 C 0.062 3.938 23 C -0.152 4.152 24 C 0.116 3.884 25 H 0.260 0.740 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -17.605 0.421 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.336 5.336 15 C 0.296 3.704 16 O -0.430 6.430 17 C -0.175 4.175 18 C -0.091 4.091 19 C -0.194 4.194 20 C -0.014 4.014 21 O -0.307 6.307 22 C -0.015 4.015 23 C -0.190 4.190 24 C -0.005 4.005 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.931 -17.476 -0.176 17.501 hybrid contribution 0.488 1.169 0.456 1.346 sum -0.443 -16.307 0.280 16.316 Atomic orbital electron populations 1.69876 1.05899 1.26380 1.50625 1.24939 0.94858 0.99104 0.94939 0.86527 0.80197 0.83669 0.77563 1.19725 1.21011 1.21038 1.21123 0.93034 0.90308 1.50772 0.92449 1.19048 0.92886 0.91176 0.94757 0.95286 1.21631 0.99458 0.95393 0.98580 1.22001 0.97648 0.96715 1.00955 1.21742 0.91374 0.99044 0.89255 1.48339 1.41884 1.16228 1.27162 1.20525 0.82930 0.85064 0.81877 1.90613 1.38052 1.81768 1.32540 1.21743 1.01288 0.94107 1.00317 1.20922 1.00723 0.93185 0.94243 1.22360 1.02055 1.00620 0.94324 1.22597 0.96726 0.83705 0.98373 1.87899 1.66351 1.36384 1.40060 1.22521 0.99190 0.95650 0.84096 1.22275 1.01733 0.96059 0.98914 1.22073 0.94999 0.82042 1.01367 0.93025 0.88630 0.94614 0.92392 0.92482 0.91153 0.92003 0.89111 0.89324 0.90365 0.91676 0.88527 0.93212 0.89016 0.93347 0.89162 0.90975 0.90964 0.92830 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.31 55.43 0.63 -24.20 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.85 8.57 -34.44 -0.30 -14.15 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.99 2.26 -91.43 -0.21 0.78 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.63 16 12 C -0.13 -2.35 6.08 -26.61 -0.16 -2.51 16 13 C 0.11 1.63 6.34 -3.71 -0.02 1.61 16 14 N -0.60 -10.89 2.97 -172.50 -0.51 -11.40 16 15 C 0.51 8.73 7.44 -10.98 -0.08 8.65 16 16 O -0.55 -11.18 13.42 5.56 0.07 -11.11 16 17 C -0.13 -1.66 3.53 -27.88 -0.10 -1.76 16 18 C -0.07 -0.86 1.92 -90.44 -0.17 -1.03 16 19 C -0.16 -2.04 5.13 -26.59 -0.14 -2.18 16 20 C 0.06 0.74 6.84 37.20 0.25 0.99 16 21 O -0.39 -4.75 10.77 -35.23 -0.38 -5.13 16 22 C 0.06 0.60 6.84 37.20 0.25 0.85 16 23 C -0.15 -1.43 5.42 -26.59 -0.14 -1.57 16 24 C 0.12 2.49 5.69 -3.49 -0.02 2.47 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.04 7.69 -51.93 -0.40 0.64 16 33 H 0.09 0.91 7.94 -51.93 -0.41 0.49 16 34 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.52 6.07 -51.93 -0.32 1.20 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.81 7.00 -51.93 -0.36 1.45 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -29.85 336.16 -8.77 -38.62 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.56 Total: 1.00 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.06 Total: -8.85 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.12 Total: -35.61 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.30 Total: -16.23 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.85 -8.77 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259688932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.780 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds