Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00106 * 2 1 4 4 H 1.48505 * 109.46822 * 269.99200 * 3 2 1 5 5 H 1.48501 * 109.47320 * 29.99458 * 3 2 1 6 6 H 1.48501 * 109.47105 * 149.99536 * 3 2 1 7 7 C 1.37882 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99432 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00168 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.50354 * 299.93371 * 9 7 2 11 11 C 1.53042 * 109.49806 * 60.00144 * 9 7 2 12 12 C 1.53041 * 109.53960 * 181.34531 * 11 9 7 13 13 C 1.53188 * 109.31323 * 298.64003 * 12 11 9 14 14 N 1.46923 * 108.78248 * 54.63155 * 13 12 11 15 15 C 1.34777 * 120.63273 * 126.36632 * 14 13 12 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.28271 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 H 1.09005 * 109.52409 * 55.12323 * 18 17 15 20 20 C 1.53174 * 109.52320 * 175.31269 * 18 17 15 21 21 C 1.53177 * 109.03481 * 176.88383 * 20 18 17 22 22 C 1.53094 * 109.16727 * 303.01872 * 21 20 18 23 23 O 1.42910 * 109.41087 * 57.60951 * 22 21 20 24 24 C 1.42900 * 114.09559 * 298.84240 * 23 22 21 25 25 C 1.46929 * 118.73574 * 306.64745 * 14 13 12 26 26 H 0.97000 * 119.99548 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46026 * 61.32944 * 11 9 7 28 28 H 1.09004 * 109.44899 * 301.36075 * 11 9 7 29 29 H 1.08997 * 109.50165 * 178.68366 * 12 11 9 30 30 H 1.09003 * 109.52225 * 58.59891 * 12 11 9 31 31 H 1.09001 * 109.58188 * 294.84012 * 13 12 11 32 32 H 1.09008 * 109.70486 * 174.49517 * 13 12 11 33 33 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 34 34 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 35 35 H 1.08998 * 109.54238 * 296.75026 * 20 18 17 36 36 H 1.08998 * 109.54345 * 57.01955 * 20 18 17 37 37 H 1.09002 * 109.52316 * 183.11077 * 21 20 18 38 38 H 1.09000 * 109.57763 * 62.96002 * 21 20 18 39 39 H 1.08998 * 109.47556 * 297.62949 * 22 21 20 40 40 H 1.09000 * 109.48077 * 177.59218 * 22 21 20 41 41 H 1.09004 * 109.48476 * 301.17683 * 24 23 22 42 42 H 1.09007 * 109.47855 * 181.14519 * 24 23 22 43 43 H 1.09003 * 109.58730 * 173.14184 * 25 14 13 44 44 H 1.09003 * 109.58586 * 293.56783 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5577 0.8907 11 6 0.3714 -2.5811 -1.2492 12 6 -0.4196 -3.8911 -1.2333 13 6 0.5558 -5.0722 -1.2502 14 7 1.4986 -4.9231 -0.1333 15 6 1.6747 -5.9215 0.7547 16 8 2.4556 -5.7859 1.6727 17 6 0.9055 -7.2086 0.6036 18 6 1.2929 -8.1695 1.7294 19 1 1.1377 -7.6835 2.6927 20 6 0.4282 -9.4311 1.6460 21 6 0.8776 -10.4172 2.7285 22 6 2.3670 -10.7205 2.5452 23 8 3.1105 -9.5014 2.6027 24 6 2.7663 -8.5595 1.5847 25 6 2.2412 -3.6624 0.0007 26 1 -0.4849 0.8401 -0.0004 27 1 1.0004 -2.5475 -2.1388 28 1 -0.3207 -1.7391 -1.2617 29 1 -1.0632 -3.9382 -2.1117 30 1 -1.0306 -3.9368 -0.3318 31 1 1.1037 -5.0800 -2.1925 32 1 0.0042 -6.0060 -1.1407 33 1 -0.1634 -7.0012 0.6547 34 1 1.1419 -7.6624 -0.3588 35 1 -0.6175 -9.1675 1.8042 36 1 0.5456 -9.8892 0.6640 37 1 0.3045 -11.3403 2.6410 38 1 0.7136 -9.9787 3.7128 39 1 2.5244 -11.1970 1.5776 40 1 2.7022 -11.3886 3.3385 41 1 2.9290 -9.0078 0.6046 42 1 3.3893 -7.6708 1.6861 43 1 2.7996 -3.6650 0.9369 44 1 2.9295 -3.5528 -0.8374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -106.973275 kcal Electronic energy + Delta-G solvation = -22940.231406 eV Core-core repulsion = 19663.351398 eV Total energy + Delta-G solvation = -3276.880008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12248 -38.96253 -36.83529 -34.41921 -33.50842 -32.14783 -31.35920 -30.29553 -27.70117 -25.10599 -25.05413 -24.42956 -22.57901 -21.68510 -20.27305 -19.69062 -18.21076 -16.88001 -16.35015 -16.28084 -15.96062 -15.37928 -15.14291 -14.66966 -14.41918 -14.24781 -13.77650 -13.49121 -13.11885 -12.90441 -12.72162 -12.60145 -12.28093 -12.26904 -12.01806 -11.66470 -11.33078 -11.04930 -10.99230 -10.90888 -10.83600 -10.70362 -10.35514 -10.29662 -9.97302 -9.82730 -9.49988 -9.45878 -9.20273 -8.83611 -8.39879 -7.90955 -6.03375 -4.10444 3.02909 3.28885 3.35831 3.39398 3.51161 3.89503 4.41553 4.58293 4.61609 4.70118 4.82061 4.99061 5.05150 5.22667 5.27547 5.34773 5.36518 5.44219 5.50789 5.54822 5.60825 5.67307 5.75354 5.76992 5.88501 5.91171 6.08909 6.23549 6.29918 6.30965 6.39284 6.46721 6.64938 6.79530 6.96349 7.14396 7.20511 7.31474 7.67585 7.90023 8.00602 8.06134 8.36019 8.64145 8.93361 9.54578 11.02171 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.003595 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.596806 B = 7786.385090 C = 8247.439771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.603 5.603 15 C 0.506 3.494 16 O -0.548 6.548 17 C -0.134 4.134 18 C -0.106 4.106 19 H 0.088 0.912 20 C -0.118 4.118 21 C -0.155 4.155 22 C 0.057 3.943 23 O -0.380 6.380 24 C 0.062 3.938 25 C 0.117 3.883 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -19.007 -1.549 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.335 5.335 15 C 0.294 3.706 16 O -0.427 6.427 17 C -0.174 4.174 18 C -0.125 4.125 19 H 0.107 0.893 20 C -0.156 4.156 21 C -0.193 4.193 22 C -0.020 4.020 23 O -0.299 6.299 24 C -0.014 4.014 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.133 0.867 43 H 0.097 0.903 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.331 -18.763 -0.934 18.833 hybrid contribution -0.052 0.932 -0.418 1.023 sum -1.383 -17.830 -1.352 17.935 Atomic orbital electron populations 1.69875 1.05905 1.26476 1.50549 1.24942 0.94866 0.99109 0.94922 0.86572 0.79948 0.83302 0.78065 1.20695 1.21239 1.19824 1.21078 0.93004 0.90283 1.50894 0.92470 1.18892 0.93040 0.91261 0.94776 0.95346 1.21633 0.99467 0.95379 0.98584 1.22004 0.97657 0.96731 1.00956 1.21748 0.91394 0.99016 0.89289 1.48335 1.42129 1.16067 1.26990 1.20532 0.83055 0.85125 0.81922 1.90643 1.37917 1.81592 1.32530 1.21696 1.01476 0.93938 1.00313 1.21546 0.96239 0.94869 0.99885 0.89339 1.21662 0.99689 0.95347 0.98881 1.22178 0.97108 0.99802 1.00205 1.22562 0.91034 0.87194 1.01212 1.87987 1.61452 1.26782 1.53640 1.22893 0.95567 0.93057 0.89911 1.21905 0.95131 0.81907 1.01492 0.92982 0.94593 0.88623 0.92477 0.92401 0.91951 0.91150 0.88776 0.89285 0.91334 0.91847 0.91086 0.90956 0.93551 0.89266 0.94064 0.86701 0.90252 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.31 55.43 0.63 -24.26 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -13.90 8.57 -34.44 -0.30 -14.19 16 8 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 9 C 0.04 0.96 2.24 -91.88 -0.21 0.76 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 12 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 13 C 0.11 1.61 6.34 -3.71 -0.02 1.59 16 14 N -0.60 -10.84 2.98 -173.02 -0.52 -11.35 16 15 C 0.51 8.71 7.43 -10.98 -0.08 8.63 16 16 O -0.55 -11.31 13.39 5.55 0.07 -11.24 16 17 C -0.13 -1.64 3.53 -27.88 -0.10 -1.74 16 18 C -0.11 -1.31 2.03 -90.48 -0.18 -1.49 16 19 H 0.09 1.29 7.96 -51.93 -0.41 0.88 16 20 C -0.12 -1.10 5.31 -26.55 -0.14 -1.24 16 21 C -0.16 -1.38 6.14 -26.59 -0.16 -1.54 16 22 C 0.06 0.56 6.84 37.21 0.25 0.82 16 23 O -0.38 -5.24 10.77 -35.23 -0.38 -5.62 16 24 C 0.06 0.83 5.84 37.21 0.22 1.05 16 25 C 0.12 2.50 5.63 -3.93 -0.02 2.48 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.81 5.94 -51.92 -0.31 0.50 16 33 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 34 H 0.09 0.90 7.94 -51.93 -0.41 0.48 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.12 1.85 6.01 -51.92 -0.31 1.54 16 43 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -30.16 336.03 -8.84 -39.00 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.56 Total: 0.73 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.13 Total: -8.38 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.11 Total: -35.61 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.30 Total: -16.86 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.16 -8.84 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.975 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds