Wall clock time and date at job start Tue Mar 31 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48497 * 109.47297 * 264.85300 * 3 2 1 5 5 H 1.48503 * 109.47053 * 24.85389 * 3 2 1 6 6 H 1.48503 * 109.47090 * 144.85122 * 3 2 1 7 7 C 1.37875 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00438 * 4.40987 * 7 2 1 9 9 C 1.50704 * 119.99966 * 184.40251 * 7 2 1 10 10 H 1.09005 * 109.49563 * 333.46610 * 9 7 2 11 11 C 1.53041 * 109.51930 * 93.54159 * 9 7 2 12 12 C 1.53047 * 109.53717 * 181.33303 * 11 9 7 13 13 C 1.53625 * 109.24305 * 298.51903 * 12 11 9 14 14 N 1.46928 * 108.54562 * 54.84934 * 13 12 11 15 15 C 1.34771 * 120.62581 * 126.36707 * 14 13 12 16 16 O 1.21282 * 120.00045 * 179.72282 * 15 14 13 17 17 C 1.50701 * 120.00365 * 359.72489 * 15 14 13 18 18 C 1.53002 * 109.47272 * 179.97438 * 17 15 14 19 19 H 1.08992 * 109.52509 * 305.12862 * 18 17 15 20 20 C 1.53179 * 109.52272 * 184.99921 * 18 17 15 21 21 C 1.53177 * 109.10770 * 183.07339 * 20 18 17 22 22 C 1.53282 * 109.06449 * 56.94408 * 21 20 18 23 23 O 1.42901 * 109.45591 * 302.44092 * 22 21 20 24 24 C 1.42900 * 114.09961 * 61.16584 * 23 22 21 25 25 C 1.46925 * 118.74085 * 306.09961 * 14 13 12 26 26 H 0.97001 * 119.99786 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46717 * 301.35900 * 11 9 7 28 28 H 1.09000 * 109.45666 * 61.32031 * 11 9 7 29 29 H 1.09000 * 109.49254 * 58.58664 * 12 11 9 30 30 H 1.08999 * 109.49744 * 178.65544 * 12 11 9 31 31 H 1.09004 * 109.73678 * 295.11536 * 13 12 11 32 32 H 1.08994 * 109.66781 * 174.54867 * 13 12 11 33 33 H 1.09005 * 109.46827 * 59.99687 * 17 15 14 34 34 H 1.08994 * 109.47018 * 299.99771 * 17 15 14 35 35 H 1.08998 * 109.54590 * 302.98349 * 20 18 17 36 36 H 1.08994 * 109.53978 * 63.16109 * 20 18 17 37 37 H 1.09005 * 109.52317 * 176.93384 * 21 20 18 38 38 H 1.09004 * 109.52096 * 297.11849 * 21 20 18 39 39 H 1.09003 * 109.45223 * 182.44811 * 22 21 20 40 40 H 1.08994 * 109.46731 * 62.44788 * 22 21 20 41 41 H 1.09000 * 109.48404 * 178.85688 * 24 23 22 42 42 H 1.09004 * 109.48293 * 58.81306 * 24 23 22 43 43 H 1.08997 * 109.58773 * 173.64240 * 25 14 13 44 44 H 1.09001 * 109.58201 * 293.92882 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6055 1.9836 -1.3944 5 1 1.3965 2.6816 0.5885 6 1 3.4882 1.4740 0.8060 7 6 2.0045 -1.1941 -0.0005 8 1 1.4670 -2.1280 -0.0729 9 6 3.5083 -1.1961 0.0997 10 1 3.9006 -0.2602 -0.2981 11 6 3.9229 -1.3417 1.5656 12 6 5.4494 -1.3105 1.6713 13 6 6.0357 -2.4919 0.8835 14 7 5.5251 -2.4351 -0.4930 15 6 6.3727 -2.4475 -1.5407 16 8 5.9387 -2.4053 -2.6724 17 6 7.8599 -2.5139 -1.3062 18 6 8.5889 -2.5157 -2.6514 19 1 8.2086 -3.3280 -3.2707 20 6 10.0907 -2.7086 -2.4196 21 6 10.8195 -2.6321 -3.7646 22 6 10.5005 -1.2892 -4.4313 23 8 9.0861 -1.1605 -4.5895 24 6 8.3575 -1.1786 -3.3603 25 6 4.0728 -2.3705 -0.7057 26 1 -0.4850 0.8401 0.0004 27 1 3.5018 -0.5205 2.1455 28 1 3.5513 -2.2893 1.9556 29 1 5.8234 -0.3735 1.2587 30 1 5.7433 -1.3902 2.7179 31 1 5.7322 -3.4305 1.3474 32 1 7.1234 -2.4221 0.8730 33 1 8.1014 -3.4266 -0.7612 34 1 8.1747 -1.6486 -0.7231 35 1 10.4613 -1.9249 -1.7589 36 1 10.2670 -3.6830 -1.9641 37 1 11.8942 -2.7141 -3.6018 38 1 10.4844 -3.4462 -4.4073 39 1 10.9811 -1.2459 -5.4087 40 1 10.8720 -0.4765 -3.8072 41 1 7.2942 -1.0556 -3.5662 42 1 8.7010 -0.3646 -2.7220 43 1 3.8650 -2.2205 -1.7651 44 1 3.6129 -3.3004 -0.3712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:18 Heat of formation + Delta-G solvation = -106.341298 kcal Electronic energy + Delta-G solvation = -23102.485299 eV Core-core repulsion = 19825.632696 eV Total energy + Delta-G solvation = -3276.852603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21076 -39.03778 -37.00573 -34.47385 -33.43485 -32.18110 -31.78670 -30.57368 -27.88301 -25.18217 -25.08967 -24.66445 -22.60578 -21.74701 -20.32016 -19.63001 -18.48897 -17.06225 -16.68726 -16.40126 -16.04687 -15.45949 -15.24214 -14.70736 -14.44685 -14.12085 -13.92321 -13.83583 -13.28090 -12.89338 -12.73976 -12.63770 -12.53058 -12.46089 -12.28985 -11.81780 -11.37694 -11.31192 -11.18687 -11.03854 -10.90708 -10.72734 -10.41692 -10.38362 -10.05492 -9.83053 -9.64939 -9.51860 -9.34249 -9.02384 -8.57244 -8.08615 -6.11732 -4.11870 2.92698 3.27675 3.35871 3.37113 3.38403 3.87105 4.39359 4.49957 4.56935 4.64299 4.77420 4.90785 4.99731 5.09328 5.19845 5.27705 5.30361 5.33709 5.40528 5.43679 5.50099 5.54907 5.62988 5.71474 5.82685 5.84754 5.87547 5.98358 6.12739 6.19693 6.23864 6.25297 6.36401 6.57450 6.68107 6.81334 6.88957 7.18669 7.23920 7.38253 7.71592 7.84932 8.45099 8.54012 8.92694 9.51149 11.01318 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.004313 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.881333 B = 6490.314229 C = 6971.242380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.007 3.993 10 H 0.033 0.967 11 C -0.113 4.113 12 C -0.139 4.139 13 C 0.109 3.891 14 N -0.609 5.609 15 C 0.505 3.495 16 O -0.543 6.543 17 C -0.135 4.135 18 C -0.106 4.106 19 H 0.088 0.912 20 C -0.118 4.118 21 C -0.155 4.155 22 C 0.056 3.944 23 O -0.379 6.379 24 C 0.061 3.939 25 C 0.122 3.878 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.115 0.885 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.267 -4.520 -0.047 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.093 0.907 9 C -0.013 4.013 10 H 0.051 0.949 11 C -0.151 4.151 12 C -0.178 4.178 13 C -0.014 4.014 14 N -0.341 5.341 15 C 0.293 3.707 16 O -0.421 6.421 17 C -0.175 4.175 18 C -0.125 4.125 19 H 0.106 0.894 20 C -0.156 4.156 21 C -0.192 4.192 22 C -0.021 4.021 23 O -0.298 6.298 24 C -0.015 4.015 25 C 0.001 3.999 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.133 0.867 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.756 -4.362 -0.822 22.204 hybrid contribution 0.505 0.879 0.577 1.167 sum 22.261 -3.483 -0.245 22.533 Atomic orbital electron populations 1.69903 1.06306 1.27072 1.50234 1.25027 0.94668 0.98956 0.94136 0.86868 0.80108 0.83669 0.78906 1.20118 1.21598 1.19014 1.20869 0.88540 0.94733 1.51012 0.90722 1.19445 0.96771 0.93993 0.91108 0.94881 1.21852 0.91396 1.01457 1.00365 1.22109 0.99138 0.97652 0.98858 1.21793 0.98046 0.99203 0.82338 1.48431 1.08375 1.71722 1.05598 1.20564 0.88556 0.76658 0.84896 1.90664 1.78828 1.50438 1.22217 1.21711 0.92720 1.04123 0.98940 1.21547 0.94465 1.00624 0.95860 0.89367 1.21663 0.94600 1.02189 0.97132 1.22209 1.00446 0.99208 0.97384 1.22598 0.82840 0.95721 1.00924 1.87992 1.17501 1.93863 1.30398 1.22898 0.98510 0.94622 0.85513 1.21956 0.75803 0.99714 1.02377 0.92563 0.92581 0.92614 0.92329 0.91896 0.91537 0.90783 0.88878 0.89112 0.91823 0.91420 0.91045 0.90990 0.89233 0.93511 0.86668 0.93958 0.89550 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.55 26.86 -169.99 -4.57 16.99 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.17 6.87 56.52 0.39 -5.78 16 7 C -0.51 -14.03 8.87 -34.44 -0.31 -14.33 16 8 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 9 C 0.01 0.15 1.86 -91.65 -0.17 -0.02 16 10 H 0.03 0.79 5.41 -51.93 -0.28 0.51 16 11 C -0.11 -2.18 5.14 -26.69 -0.14 -2.32 16 12 C -0.14 -2.08 6.10 -26.38 -0.16 -2.24 16 13 C 0.11 1.44 6.37 -3.48 -0.02 1.42 16 14 N -0.61 -10.21 2.97 -172.51 -0.51 -10.72 16 15 C 0.51 8.25 7.43 -10.99 -0.08 8.17 16 16 O -0.54 -10.88 13.40 5.56 0.07 -10.81 16 17 C -0.13 -1.53 3.52 -27.88 -0.10 -1.63 16 18 C -0.11 -1.24 2.03 -90.48 -0.18 -1.42 16 19 H 0.09 1.20 7.95 -51.93 -0.41 0.79 16 20 C -0.12 -1.04 5.31 -26.55 -0.14 -1.18 16 21 C -0.15 -1.31 6.15 -26.49 -0.16 -1.48 16 22 C 0.06 0.55 6.85 37.30 0.26 0.81 16 23 O -0.38 -5.29 10.77 -35.23 -0.38 -5.67 16 24 C 0.06 0.83 5.84 37.21 0.22 1.05 16 25 C 0.12 2.51 5.70 -3.71 -0.02 2.49 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.06 1.16 8.03 -51.93 -0.42 0.74 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.73 5.93 -51.93 -0.31 0.43 16 33 H 0.09 0.85 7.93 -51.93 -0.41 0.44 16 34 H 0.09 0.90 7.70 -51.93 -0.40 0.50 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.12 1.92 6.04 -51.93 -0.31 1.61 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.96 7.01 -51.93 -0.36 1.60 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -31.80 335.74 -8.21 -40.02 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.55 Total: 0.19 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.11 Total: -8.67 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.26 Total: -37.11 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.30 Total: -16.47 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.57 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.80 -8.21 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.325 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds