Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47256 * 270.00118 * 3 2 1 5 5 H 1.48501 * 109.47202 * 30.00528 * 3 2 1 6 6 H 1.48506 * 109.46997 * 150.00140 * 3 2 1 7 7 C 1.37882 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99757 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50172 * 59.93556 * 9 7 2 11 11 C 1.53037 * 109.52450 * 299.85016 * 9 7 2 12 12 C 1.53042 * 109.53795 * 178.67116 * 11 9 7 13 13 C 1.52758 * 109.38334 * 61.24207 * 12 11 9 14 14 N 1.46924 * 109.00770 * 305.58484 * 13 12 11 15 15 C 1.34778 * 120.63322 * 233.58376 * 14 13 12 16 16 O 1.21281 * 120.00009 * 179.72379 * 15 14 13 17 17 C 1.50704 * 119.99740 * 359.72420 * 15 14 13 18 18 C 1.53000 * 109.46726 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.52286 * 55.00021 * 18 17 15 20 20 C 1.53177 * 109.51896 * 175.12699 * 18 17 15 21 21 C 1.53181 * 109.03787 * 176.94962 * 20 18 17 22 22 C 1.53093 * 109.16218 * 303.01964 * 21 20 18 23 23 O 1.42905 * 109.41329 * 57.60476 * 22 21 20 24 24 C 1.43030 * 114.13728 * 298.83738 * 23 22 21 25 25 C 1.46927 * 118.73526 * 53.31712 * 14 13 12 26 26 H 0.97004 * 119.99885 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46310 * 298.69257 * 11 9 7 28 28 H 1.08994 * 109.46021 * 58.66449 * 11 9 7 29 29 H 1.09007 * 109.49762 * 181.31995 * 12 11 9 30 30 H 1.09006 * 109.49639 * 301.38140 * 12 11 9 31 31 H 1.09004 * 109.50577 * 185.70649 * 13 12 11 32 32 H 1.08994 * 109.43358 * 65.42301 * 13 12 11 33 33 H 1.09002 * 109.47029 * 59.99677 * 17 15 14 34 34 H 1.08999 * 109.47065 * 299.99585 * 17 15 14 35 35 H 1.09001 * 109.54414 * 296.81428 * 20 18 17 36 36 H 1.09002 * 109.54680 * 57.08371 * 20 18 17 37 37 H 1.09005 * 109.52357 * 62.91938 * 21 20 18 38 38 H 1.08991 * 109.52488 * 183.11066 * 21 20 18 39 39 H 1.09000 * 109.48150 * 177.58678 * 22 21 20 40 40 H 1.09002 * 109.47839 * 297.61302 * 22 21 20 41 41 H 1.08999 * 109.46933 * 301.19433 * 24 23 22 42 42 H 1.09000 * 109.57180 * 181.11227 * 24 23 22 43 43 H 1.08991 * 109.59292 * 66.42830 * 25 14 13 44 44 H 1.09004 * 109.58427 * 186.85304 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6237 -2.5563 -0.8912 11 6 0.3731 -2.5839 1.2489 12 6 -0.4173 -3.8943 1.2315 13 6 0.5546 -5.0728 1.2419 14 7 1.5000 -4.9232 0.1272 15 6 1.6755 -5.9199 -0.7629 16 8 2.4553 -5.7821 -1.6815 17 6 0.9029 -7.2055 -0.6166 18 6 1.2849 -8.1616 -1.7483 19 1 2.3657 -8.3031 -1.7564 20 6 0.5935 -9.5114 -1.5333 21 6 0.9219 -10.4343 -2.7109 22 6 0.4867 -9.7597 -4.0145 23 8 1.1427 -8.4961 -4.1375 24 6 0.8359 -7.5733 -3.0886 25 6 2.2460 -3.6640 -0.0021 26 1 -0.4850 0.8401 0.0004 27 1 1.0031 -2.5516 2.1378 28 1 -0.3196 -1.7425 1.2641 29 1 -1.0599 -3.9433 2.1107 30 1 -1.0295 -3.9380 0.3306 31 1 -0.0009 -6.0037 1.1274 32 1 1.1006 -5.0843 2.1851 33 1 -0.1655 -6.9947 -0.6644 34 1 1.1400 -7.6647 0.3431 35 1 0.9513 -9.9609 -0.6070 36 1 -0.4849 -9.3636 -1.4756 37 1 1.9954 -10.6217 -2.7385 38 1 0.3894 -11.3780 -2.5937 39 1 0.7569 -10.3932 -4.8594 40 1 -0.5928 -9.6095 -4.0033 41 1 -0.2390 -7.3944 -3.0651 42 1 1.3574 -6.6327 -3.2656 43 1 2.9328 -3.5582 0.8376 44 1 2.8063 -3.6657 -0.9371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = -106.978827 kcal Electronic energy + Delta-G solvation = -23000.498295 eV Core-core repulsion = 19723.618047 eV Total energy + Delta-G solvation = -3276.880249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -40.11064 -38.93882 -36.83386 -34.40152 -33.50298 -32.13246 -31.37442 -30.28771 -27.68833 -25.10180 -25.03220 -24.42417 -22.56297 -21.68483 -20.28296 -19.65472 -18.22627 -16.88593 -16.36592 -16.19313 -15.95101 -15.35995 -15.14061 -14.67352 -14.37933 -14.27604 -13.78100 -13.48801 -13.11336 -12.83074 -12.72911 -12.62253 -12.39216 -12.11039 -12.02675 -11.71535 -11.32032 -11.05494 -10.98080 -10.87238 -10.83963 -10.71288 -10.32717 -10.30391 -9.97450 -9.78816 -9.48284 -9.45214 -9.22602 -8.83332 -8.40047 -7.90768 -6.03329 -4.10338 3.02842 3.29564 3.36109 3.38824 3.51278 3.92235 4.41641 4.58459 4.62685 4.70225 4.83778 4.99502 5.07088 5.22878 5.28297 5.36094 5.38755 5.47009 5.50163 5.58153 5.61167 5.68111 5.76651 5.77758 5.88676 5.90746 6.08870 6.27646 6.29446 6.31028 6.39522 6.46205 6.64859 6.79014 6.95698 7.14339 7.23778 7.31326 7.67551 7.89897 8.00550 8.05790 8.36062 8.64117 8.93379 9.54705 11.02237 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.003728 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.203548 B = 7508.736705 C = 7920.980074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.109 3.891 14 N -0.603 5.603 15 C 0.506 3.494 16 O -0.548 6.548 17 C -0.134 4.134 18 C -0.105 4.105 19 H 0.087 0.913 20 C -0.118 4.118 21 C -0.155 4.155 22 C 0.057 3.943 23 O -0.380 6.380 24 C 0.061 3.939 25 C 0.116 3.884 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.116 0.884 43 H 0.054 0.946 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -18.437 0.675 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.014 4.014 14 N -0.335 5.335 15 C 0.294 3.706 16 O -0.427 6.427 17 C -0.175 4.175 18 C -0.124 4.124 19 H 0.105 0.895 20 C -0.156 4.156 21 C -0.192 4.192 22 C -0.020 4.020 23 O -0.299 6.299 24 C -0.015 4.015 25 C -0.005 4.005 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.468 -18.180 0.055 18.347 hybrid contribution 0.080 0.870 0.496 1.005 sum -2.388 -17.310 0.552 17.483 Atomic orbital electron populations 1.69872 1.05901 1.26479 1.50547 1.24938 0.94861 0.99097 0.94917 0.86577 0.79844 0.83302 0.78182 1.20637 1.21261 1.19876 1.21081 0.93005 0.90294 1.50906 0.92480 1.18969 0.92960 0.91217 0.94761 0.95294 1.21628 0.99453 0.95351 0.98607 1.21935 0.97705 0.96787 1.00977 1.21654 0.91357 0.99029 0.89354 1.48335 1.41897 1.16193 1.27098 1.20532 0.83031 0.85101 0.81972 1.90643 1.37987 1.81632 1.32426 1.21702 1.01254 0.94104 1.00395 1.21539 1.02086 0.93899 0.94915 0.89477 1.21668 1.00506 0.95068 0.98349 1.22176 1.02521 0.98820 0.95727 1.22560 0.96259 0.85787 0.97444 1.88005 1.70189 1.24071 1.47611 1.22927 0.99373 0.93426 0.85798 1.21999 0.95086 0.81915 1.01485 0.92980 0.94589 0.88655 0.92439 0.92418 0.91158 0.91974 0.89077 0.88980 0.91440 0.91777 0.91036 0.91101 0.89282 0.93499 0.93883 0.86597 0.92782 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C -0.14 -2.34 6.06 -26.83 -0.16 -2.50 16 13 C 0.11 1.62 6.31 -3.94 -0.02 1.59 16 14 N -0.60 -10.83 2.98 -173.03 -0.52 -11.35 16 15 C 0.51 8.70 7.43 -10.98 -0.08 8.62 16 16 O -0.55 -11.31 13.39 5.56 0.07 -11.23 16 17 C -0.13 -1.64 3.53 -27.88 -0.10 -1.74 16 18 C -0.11 -1.29 2.03 -90.48 -0.18 -1.48 16 19 H 0.09 1.23 7.96 -51.93 -0.41 0.81 16 20 C -0.12 -1.10 5.31 -26.55 -0.14 -1.24 16 21 C -0.15 -1.37 6.14 -26.59 -0.16 -1.54 16 22 C 0.06 0.58 6.84 37.21 0.25 0.83 16 23 O -0.38 -5.43 10.77 -35.23 -0.38 -5.81 16 24 C 0.06 0.86 5.85 37.21 0.22 1.08 16 25 C 0.12 2.49 5.66 -3.71 -0.02 2.47 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 2.40 6.05 -51.93 -0.31 2.08 16 29 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.81 5.94 -51.93 -0.31 0.50 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 34 H 0.09 0.93 7.95 -51.93 -0.41 0.51 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.12 1.99 6.02 -51.93 -0.31 1.68 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.84 7.01 -51.93 -0.36 1.47 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -30.08 336.07 -8.84 -38.92 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.56 Total: 0.86 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.13 Total: -8.29 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.11 Total: -35.57 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.30 Total: -17.05 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.08 -8.84 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.058 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.51 seconds