Wall clock time and date at job start Tue Mar 31 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47369 * 85.08447 * 3 2 1 5 5 H 1.48496 * 109.47216 * 205.08993 * 3 2 1 6 6 H 1.48502 * 109.47077 * 325.08764 * 3 2 1 7 7 C 1.37884 * 120.00169 * 180.27235 * 2 1 3 8 8 H 1.07991 * 119.99785 * 172.24600 * 7 2 1 9 9 C 1.50704 * 119.99621 * 352.24719 * 7 2 1 10 10 H 1.08998 * 109.49690 * 56.25976 * 9 7 2 11 11 C 1.53035 * 109.49613 * 296.16216 * 9 7 2 12 12 C 1.53047 * 109.53484 * 178.68643 * 11 9 7 13 13 C 1.53191 * 109.30916 * 61.36943 * 12 11 9 14 14 N 1.46925 * 108.77301 * 305.35628 * 13 12 11 15 15 C 1.34778 * 120.63323 * 233.58461 * 14 13 12 16 16 O 1.21273 * 120.00034 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99974 * 0.03536 * 15 14 13 18 18 C 1.53000 * 109.47166 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.52664 * 304.87186 * 18 17 15 20 20 C 1.53180 * 109.52380 * 184.68331 * 18 17 15 21 21 C 1.53179 * 109.03680 * 183.11706 * 20 18 17 22 22 C 1.53092 * 109.16300 * 56.97817 * 21 20 18 23 23 O 1.42901 * 109.41838 * 302.39370 * 22 21 20 24 24 C 1.42903 * 114.09692 * 61.15913 * 23 22 21 25 25 C 1.46923 * 118.73658 * 53.62203 * 14 13 12 26 26 H 0.97003 * 120.00260 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46421 * 298.70686 * 11 9 7 28 28 H 1.08993 * 109.46110 * 58.66779 * 11 9 7 29 29 H 1.08996 * 109.49881 * 301.41151 * 12 11 9 30 30 H 1.09008 * 109.49401 * 181.31523 * 12 11 9 31 31 H 1.09004 * 109.57923 * 185.57580 * 13 12 11 32 32 H 1.08994 * 109.58885 * 65.15475 * 13 12 11 33 33 H 1.09000 * 109.46980 * 299.99727 * 17 15 14 34 34 H 1.09003 * 109.47069 * 59.99280 * 17 15 14 35 35 H 1.09004 * 109.54240 * 302.98087 * 20 18 17 36 36 H 1.08999 * 109.54326 * 63.24539 * 20 18 17 37 37 H 1.09000 * 109.51832 * 297.07590 * 21 20 18 38 38 H 1.09001 * 109.57399 * 176.91811 * 21 20 18 39 39 H 1.08994 * 109.47815 * 182.40259 * 22 21 20 40 40 H 1.09007 * 109.48833 * 62.38050 * 22 21 20 41 41 H 1.09001 * 109.47862 * 178.86222 * 24 23 22 42 42 H 1.08993 * 109.49183 * 58.82765 * 24 23 22 43 43 H 1.09006 * 109.59094 * 186.60001 * 25 14 13 44 44 H 1.09003 * 109.59268 * 66.17163 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3928 2.1064 1.3949 5 1 3.5947 1.4124 -0.5937 6 1 1.5023 2.6204 -0.8013 7 6 2.0046 -1.1941 -0.0057 8 1 3.0771 -1.1977 -0.1319 9 6 1.2613 -2.4940 0.1642 10 1 0.4901 -2.5750 -0.6018 11 6 0.6124 -2.5341 1.5496 12 6 -0.1698 -3.8396 1.7108 13 6 0.7934 -5.0250 1.5936 14 7 1.5276 -4.9142 0.3258 15 6 1.5473 -5.9398 -0.5483 16 8 2.1574 -5.8361 -1.5913 17 6 0.8109 -7.2155 -0.2299 18 6 0.9923 -8.2095 -1.3787 19 1 0.6737 -7.7482 -2.3134 20 6 0.1503 -9.4608 -1.1108 21 6 0.4001 -10.4795 -2.2271 22 6 1.8974 -10.7909 -2.2974 23 8 2.6245 -9.5805 -2.5174 24 6 2.4668 -8.6087 -1.4817 25 6 2.2408 -3.6643 0.0295 26 1 -0.4851 0.8401 0.0004 27 1 1.3864 -2.4776 2.3150 28 1 -0.0666 -1.6883 1.6571 29 1 -0.9279 -3.9083 0.9306 30 1 -0.6510 -3.8571 2.6888 31 1 0.2288 -5.9574 1.6086 32 1 1.4968 -5.0080 2.4261 33 1 1.2093 -7.6452 0.6892 34 1 -0.2498 -7.0001 -0.1003 35 1 0.4351 -9.8935 -0.1518 36 1 -0.9060 -9.1923 -1.0919 37 1 0.0692 -10.0649 -3.1793 38 1 -0.1528 -11.3950 -2.0165 39 1 2.0866 -11.4830 -3.1179 40 1 2.2193 -11.2429 -1.3592 41 1 3.0662 -7.7286 -1.7148 42 1 2.7960 -9.0318 -0.5328 43 1 2.6313 -3.6986 -0.9876 44 1 3.0623 -3.5362 0.7344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:43 Heat of formation + Delta-G solvation = -107.988476 kcal Electronic energy + Delta-G solvation = -22932.526356 eV Core-core repulsion = 19655.602325 eV Total energy + Delta-G solvation = -3276.924030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.12369 -38.96277 -36.83665 -34.41865 -33.47815 -32.14556 -31.41799 -30.28294 -27.71148 -25.09239 -25.04846 -24.45934 -22.58027 -21.69952 -20.27548 -19.70798 -18.23272 -16.87735 -16.35128 -16.27956 -15.96554 -15.38564 -15.14573 -14.66601 -14.41073 -14.24579 -13.77721 -13.51753 -13.13311 -12.89344 -12.72061 -12.60174 -12.29900 -12.27829 -12.03063 -11.67603 -11.32940 -11.07609 -10.99477 -10.90547 -10.84237 -10.71609 -10.36207 -10.32083 -10.05105 -9.77801 -9.52132 -9.47737 -9.20899 -8.85103 -8.38368 -7.91428 -6.05697 -4.09018 3.02819 3.28859 3.36352 3.39508 3.50774 3.89594 4.42223 4.58098 4.61662 4.70246 4.82125 4.98922 5.05090 5.21855 5.27437 5.34764 5.35592 5.43941 5.50655 5.54614 5.58006 5.67311 5.73472 5.76461 5.88593 5.91229 6.06685 6.23197 6.28493 6.30063 6.37547 6.42481 6.62933 6.76689 6.94656 7.10548 7.20588 7.24891 7.66820 7.87441 7.97408 8.00035 8.34908 8.64092 8.94877 9.55014 11.02829 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033897 B = 0.003589 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.831105 B = 7799.837301 C = 8224.627995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.034 0.966 11 C -0.107 4.107 12 C -0.136 4.136 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.506 3.494 16 O -0.547 6.547 17 C -0.134 4.134 18 C -0.106 4.106 19 H 0.088 0.912 20 C -0.118 4.118 21 C -0.155 4.155 22 C 0.057 3.943 23 O -0.380 6.380 24 C 0.062 3.938 25 C 0.116 3.884 26 H 0.260 0.740 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.115 0.885 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -19.054 2.974 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.052 0.948 11 C -0.145 4.145 12 C -0.174 4.174 13 C -0.014 4.014 14 N -0.336 5.336 15 C 0.294 3.706 16 O -0.426 6.426 17 C -0.174 4.174 18 C -0.125 4.125 19 H 0.107 0.893 20 C -0.156 4.156 21 C -0.193 4.193 22 C -0.020 4.020 23 O -0.299 6.299 24 C -0.014 4.014 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.133 0.867 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.101 -18.833 2.266 19.001 hybrid contribution 0.011 0.984 0.505 1.106 sum -1.090 -17.849 2.771 18.096 Atomic orbital electron populations 1.69955 1.05942 1.26560 1.50111 1.24937 0.94796 0.99090 0.94878 0.86602 0.80090 0.83538 0.77939 1.20724 1.19785 1.21279 1.21065 0.93805 0.90477 1.50154 0.92444 1.18976 0.94045 0.91283 0.93726 0.94758 1.21561 0.98807 0.95028 0.99115 1.22000 0.98090 0.96621 1.00670 1.21733 0.94773 0.99082 0.85802 1.48339 1.50836 1.15454 1.18953 1.20528 0.81393 0.84956 0.83744 1.90642 1.44836 1.82165 1.24956 1.21698 1.01972 0.93889 0.99873 1.21548 0.96946 0.94673 0.99377 0.89327 1.21664 1.00231 0.95254 0.98428 1.22178 0.97438 0.99617 1.00064 1.22560 0.90913 0.87400 1.01127 1.87986 1.69337 1.25996 1.46537 1.22893 0.95882 0.92427 0.90227 1.21998 0.95159 0.82124 1.01162 0.92997 0.94365 0.90149 0.92254 0.92438 0.91077 0.91911 0.89291 0.88771 0.91855 0.91333 0.90956 0.91078 0.89270 0.93557 0.86699 0.94067 0.90166 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 11.97 55.43 0.66 -24.41 16 2 C 0.06 1.77 5.21 -17.82 -0.09 1.68 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -13.96 8.51 -34.44 -0.29 -14.25 16 8 H 0.06 1.54 7.76 -52.49 -0.41 1.13 16 9 C 0.04 0.95 2.13 -91.65 -0.20 0.75 16 10 H 0.03 0.95 8.13 -51.93 -0.42 0.53 16 11 C -0.11 -2.33 5.00 -26.69 -0.13 -2.46 16 12 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 13 C 0.11 1.60 6.34 -3.71 -0.02 1.57 16 14 N -0.60 -10.78 2.97 -172.77 -0.51 -11.29 16 15 C 0.51 8.69 7.43 -10.99 -0.08 8.60 16 16 O -0.55 -11.30 13.38 5.56 0.07 -11.22 16 17 C -0.13 -1.63 3.53 -27.88 -0.10 -1.73 16 18 C -0.11 -1.30 2.04 -90.48 -0.18 -1.49 16 19 H 0.09 1.29 7.96 -51.93 -0.41 0.88 16 20 C -0.12 -1.10 5.31 -26.55 -0.14 -1.24 16 21 C -0.16 -1.38 6.14 -26.59 -0.16 -1.54 16 22 C 0.06 0.56 6.84 37.21 0.25 0.82 16 23 O -0.38 -5.24 10.77 -35.23 -0.38 -5.62 16 24 C 0.06 0.83 5.84 37.21 0.22 1.05 16 25 C 0.12 2.49 5.66 -3.71 -0.02 2.47 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.99 6.67 -51.93 -0.35 1.64 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.07 0.80 5.93 -51.93 -0.31 0.50 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.89 7.94 -51.93 -0.41 0.47 16 34 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 1.85 6.01 -51.93 -0.31 1.54 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.86 7.01 -51.93 -0.36 1.50 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -30.39 337.12 -8.81 -39.20 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.59 Total: 0.45 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.12 Total: -8.24 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.15 Total: -35.71 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.30 Total: -16.84 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.39 -8.81 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.787 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds