Wall clock time and date at job start Tue Mar 31 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99701 * 2 1 4 4 H 1.48491 * 109.47426 * 270.00054 * 3 2 1 5 5 H 1.48499 * 109.47149 * 30.01034 * 3 2 1 6 6 H 1.48509 * 109.46489 * 150.00165 * 3 2 1 7 7 C 1.37869 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00108 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.53046 * 109.45623 * 184.99501 * 10 9 7 12 12 C 1.53188 * 109.33941 * 178.59414 * 11 10 9 13 13 N 1.46999 * 108.73766 * 54.62526 * 12 11 10 14 14 C 1.34775 * 120.61464 * 126.38718 * 13 12 11 15 15 O 1.21288 * 119.99398 * 175.32291 * 14 13 12 16 16 C 1.50693 * 120.00402 * 355.32083 * 14 13 12 17 17 H 1.09005 * 109.51868 * 35.45233 * 16 14 13 18 18 C 1.53175 * 109.52297 * 275.32857 * 16 14 13 19 19 C 1.53176 * 109.03955 * 183.11032 * 18 16 14 20 20 C 1.53095 * 109.16206 * 56.97871 * 19 18 16 21 21 O 1.42903 * 109.41360 * 302.39402 * 20 19 18 22 22 C 1.42913 * 114.15521 * 61.12469 * 21 20 19 23 23 C 1.46929 * 118.75170 * 306.40910 * 13 12 11 24 24 C 1.53035 * 109.46316 * 64.92980 * 10 9 7 25 25 H 0.97006 * 119.99954 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47582 * 59.99011 * 9 7 2 27 27 H 1.09001 * 109.46226 * 299.99232 * 9 7 2 28 28 H 1.08998 * 109.44845 * 304.95866 * 10 9 7 29 29 H 1.08993 * 109.49696 * 298.56593 * 11 10 9 30 30 H 1.09001 * 109.49822 * 58.62793 * 11 10 9 31 31 H 1.08997 * 109.58797 * 174.43592 * 12 11 10 32 32 H 1.08997 * 109.59041 * 294.86639 * 12 11 10 33 33 H 1.08996 * 109.54336 * 302.98080 * 18 16 14 34 34 H 1.09010 * 109.54639 * 63.24432 * 18 16 14 35 35 H 1.08993 * 109.52557 * 176.88880 * 19 18 16 36 36 H 1.09009 * 109.51923 * 297.07572 * 19 18 16 37 37 H 1.08996 * 109.47923 * 62.37538 * 20 19 18 38 38 H 1.08992 * 109.48070 * 182.40030 * 20 19 18 39 39 H 1.08996 * 109.53378 * 178.92290 * 22 21 20 40 40 H 1.08998 * 109.42461 * 58.88908 * 22 21 20 41 41 H 1.09007 * 109.58800 * 293.81976 * 23 13 12 42 42 H 1.08996 * 109.70404 * 173.46838 * 23 13 12 43 43 H 1.09000 * 109.49815 * 301.33313 * 24 10 9 44 44 H 1.08993 * 109.50198 * 61.39832 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5467 -2.6380 0.1262 12 6 6.0514 -4.0839 0.1611 13 7 5.5427 -4.7904 -1.0233 14 6 6.3860 -5.4400 -1.8500 15 8 5.9473 -6.0896 -2.7755 16 6 7.8737 -5.3592 -1.6243 17 1 8.0787 -5.3291 -0.5542 18 6 8.4238 -4.0923 -2.2867 19 6 9.9459 -4.0608 -2.1179 20 6 10.5444 -5.3363 -2.7167 21 8 9.9677 -6.4770 -2.0778 22 6 8.5520 -6.5852 -2.2409 23 6 4.0977 -4.7747 -1.2892 24 6 3.6155 -3.3207 -1.3073 25 1 -0.4850 0.8401 0.0004 26 1 3.8746 -0.6806 0.8904 27 1 3.8751 -0.6796 -0.8896 28 1 3.5869 -3.1751 0.8420 29 1 5.9830 -2.1209 -0.7284 30 1 5.8362 -2.1293 1.0457 31 1 7.1414 -4.0909 0.1514 32 1 5.6889 -4.5759 1.0636 33 1 8.1746 -4.0980 -3.3478 34 1 7.9861 -3.2135 -1.8128 35 1 10.3517 -3.1908 -2.6340 36 1 10.1937 -4.0050 -1.0578 37 1 10.3308 -5.3713 -3.7850 38 1 11.6232 -5.3392 -2.5615 39 1 8.1957 -7.4868 -1.7427 40 1 8.3124 -6.6377 -3.3029 41 1 3.5758 -5.3230 -0.5048 42 1 3.8966 -5.2384 -2.2548 43 1 2.5304 -3.2986 -1.4079 44 1 4.0695 -2.7969 -2.1485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:11 Heat of formation + Delta-G solvation = -105.390181 kcal Electronic energy + Delta-G solvation = -23031.786433 eV Core-core repulsion = 19754.975073 eV Total energy + Delta-G solvation = -3276.811360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.67641 -38.96764 -37.39514 -34.35029 -33.79379 -32.17484 -31.69131 -30.63327 -28.63629 -25.39082 -25.16670 -24.20510 -22.80712 -21.66557 -20.80355 -19.69995 -18.67575 -17.42790 -16.74538 -16.59070 -16.03818 -15.66782 -15.21894 -14.87121 -14.40075 -14.34626 -14.01583 -13.69247 -13.38367 -13.17910 -13.03216 -12.88914 -12.68867 -12.37558 -12.21980 -11.78640 -11.52557 -11.47700 -11.23325 -11.20531 -10.91581 -10.66931 -10.63155 -10.40336 -9.95147 -9.88981 -9.71559 -9.61120 -9.47319 -9.08953 -8.56712 -8.46814 -6.07073 -4.04810 2.58566 3.00741 3.27423 3.35369 3.37590 3.62146 4.33132 4.42005 4.47712 4.52730 4.60794 4.75942 4.85867 5.03638 5.11816 5.21136 5.24188 5.30298 5.35208 5.47093 5.48307 5.49223 5.52927 5.58526 5.65104 5.71980 5.79050 5.85603 5.94026 5.98375 6.20269 6.24873 6.38429 6.51445 6.77137 6.81841 6.89653 6.96938 7.21251 7.37126 7.48040 7.76408 8.17792 8.50535 8.97567 9.55696 11.06187 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029366 B = 0.003815 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.255619 B = 7338.126335 C = 7901.388246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.072 4.072 11 C -0.133 4.133 12 C 0.104 3.896 13 N -0.603 5.603 14 C 0.521 3.479 15 O -0.548 6.548 16 C -0.144 4.144 17 H 0.101 0.899 18 C -0.112 4.112 19 C -0.153 4.153 20 C 0.057 3.943 21 O -0.381 6.381 22 C 0.080 3.920 23 C 0.108 3.892 24 C -0.119 4.119 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.010 0.990 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.104 -9.154 -2.069 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.171 4.171 12 C -0.019 4.019 13 N -0.335 5.335 14 C 0.308 3.692 15 O -0.427 6.427 16 C -0.166 4.166 17 H 0.119 0.881 18 C -0.150 4.150 19 C -0.191 4.191 20 C -0.020 4.020 21 O -0.299 6.299 22 C 0.003 3.997 23 C -0.013 4.013 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.807 -9.514 -2.449 22.109 hybrid contribution 0.061 1.384 -0.004 1.385 sum 19.868 -8.130 -2.453 21.607 Atomic orbital electron populations 1.69914 1.06280 1.26841 1.51212 1.25031 0.94697 0.99115 0.94674 0.86806 0.80327 0.83841 0.78435 1.20407 1.21459 1.19114 1.21133 0.89404 0.94363 1.50590 0.90841 1.19612 0.97256 0.91564 0.96144 1.21011 0.91939 0.99121 0.97031 1.22072 0.98378 0.94468 1.02181 1.21909 0.98876 0.93614 0.87509 1.48203 1.07978 1.51535 1.25807 1.20338 0.88135 0.78825 0.81862 1.90678 1.78655 1.41688 1.31643 1.21990 0.92624 0.98734 1.03219 0.88079 1.21543 0.95553 0.96314 1.01581 1.22190 0.95390 0.98866 1.02648 1.22621 0.98049 0.85148 0.96163 1.87941 1.20726 1.45168 1.76106 1.22378 0.79983 0.96332 1.01048 1.21791 0.78632 0.98720 1.02182 1.21903 1.02767 0.92772 0.98240 0.92772 0.96630 0.97172 0.91665 0.92027 0.91006 0.90162 0.91205 0.91019 0.90467 0.90336 0.90720 0.93017 0.88766 0.88502 0.91698 0.91656 0.89576 0.89196 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.05 8.94 -34.44 -0.31 -14.36 16 8 H 0.07 2.14 7.30 -52.48 -0.38 1.75 16 9 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 10 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 11 C -0.13 -1.86 5.36 -26.61 -0.14 -2.00 16 12 C 0.10 1.21 6.26 -3.67 -0.02 1.19 16 13 N -0.60 -8.30 2.97 -172.71 -0.51 -8.82 16 14 C 0.52 7.29 6.81 -10.99 -0.07 7.21 16 15 O -0.55 -9.47 15.48 5.55 0.09 -9.38 16 16 C -0.14 -1.54 1.88 -91.64 -0.17 -1.71 16 17 H 0.10 0.96 6.30 -51.93 -0.33 0.63 16 18 C -0.11 -1.07 5.20 -26.55 -0.14 -1.21 16 19 C -0.15 -1.16 6.14 -26.59 -0.16 -1.33 16 20 C 0.06 0.46 6.85 37.21 0.25 0.71 16 21 O -0.38 -4.06 10.76 -35.23 -0.38 -4.44 16 22 C 0.08 0.87 5.71 37.20 0.21 1.08 16 23 C 0.11 1.66 6.42 -3.71 -0.02 1.64 16 24 C -0.12 -2.08 5.19 -26.61 -0.14 -2.22 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 27 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.75 5.17 -51.93 -0.27 0.48 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.74 7.88 -51.92 -0.41 0.34 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 41 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 43 H 0.09 1.77 6.91 -51.93 -0.36 1.41 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -31.52 336.40 -8.26 -39.78 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.52 Total: -1.23 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.10 Total: -11.00 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.26 Total: -35.43 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.29 Total: -13.82 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.52 -8.26 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.612 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds