Wall clock time and date at job start Tue Mar 31 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47439 * 299.99902 * 3 2 1 6 6 H 1.48500 * 109.47127 * 60.00395 * 3 2 1 7 7 C 1.37878 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99775 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.53070 * 109.44585 * 59.78830 * 9 7 2 11 11 C 1.53195 * 109.29524 * 181.23845 * 10 9 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47009 * 180.02562 * 15 13 12 17 17 C 1.53185 * 109.54082 * 294.82074 * 16 15 13 18 18 C 1.53106 * 109.15795 * 183.24070 * 17 16 15 19 19 O 1.42903 * 109.48583 * 57.47645 * 18 17 16 20 20 C 1.42909 * 114.09538 * 298.88828 * 19 18 17 21 21 C 1.53088 * 109.41376 * 61.15950 * 20 19 18 22 22 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 23 23 C 1.53039 * 109.46083 * 179.97438 * 9 7 2 24 24 H 0.97008 * 119.99764 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.45494 * 299.96089 * 9 7 2 26 26 H 1.08997 * 109.38860 * 61.36032 * 10 9 7 27 27 H 1.09003 * 109.62046 * 301.25375 * 10 9 7 28 28 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 29 29 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 30 30 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 31 31 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 32 32 H 1.08994 * 109.54776 * 54.99957 * 16 15 13 33 33 H 1.09003 * 109.52369 * 303.06102 * 17 16 15 34 34 H 1.09002 * 109.52252 * 63.24920 * 17 16 15 35 35 H 1.08999 * 109.40457 * 297.49856 * 18 17 16 36 36 H 1.08996 * 109.48400 * 177.50365 * 18 17 16 37 37 H 1.09000 * 109.48126 * 301.17114 * 20 19 18 38 38 H 1.09005 * 109.48392 * 181.14896 * 20 19 18 39 39 H 1.08999 * 109.52014 * 182.48310 * 21 20 19 40 40 H 1.08999 * 109.57594 * 62.32694 * 21 20 19 41 41 H 1.08998 * 109.58787 * 66.18123 * 22 12 11 42 42 H 1.09007 * 109.58600 * 186.46436 * 22 12 11 43 43 H 1.09002 * 109.49876 * 58.67167 * 23 9 7 44 44 H 1.09005 * 109.52615 * 298.59417 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 0.3676 -2.5775 -1.2471 11 6 -0.4200 -3.8914 -1.2280 12 7 0.5224 -5.0089 -1.0814 13 6 0.5124 -6.0349 -1.9555 14 8 -0.2794 -6.0412 -2.8740 15 6 1.4859 -7.1736 -1.7919 16 6 1.2654 -8.1972 -2.9074 17 6 -0.1211 -8.8305 -2.7550 18 6 -0.3009 -9.9100 -3.8258 19 8 0.7396 -10.8817 -3.7025 20 6 2.0552 -10.3540 -3.8841 21 6 2.3305 -9.2940 -2.8144 22 6 1.4764 -4.9866 0.0358 23 6 2.2455 -3.6623 0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5567 0.8908 26 1 0.9952 -2.5425 -2.1376 27 1 -0.3267 -1.7373 -1.2574 28 1 -0.9729 -3.9996 -2.1612 29 1 -1.1161 -3.8880 -0.3893 30 1 2.5051 -6.7910 -1.8466 31 1 1.3282 -7.6503 -0.8245 32 1 1.3356 -7.7021 -3.8759 33 1 -0.2089 -9.2815 -1.7665 34 1 -0.8869 -8.0643 -2.8761 35 1 -0.2548 -9.4514 -4.8135 36 1 -1.2683 -10.3947 -3.6945 37 1 2.1320 -9.9014 -4.8727 38 1 2.7852 -11.1586 -3.7950 39 1 3.3165 -8.8591 -2.9779 40 1 2.2945 -9.7539 -1.8268 41 1 0.9366 -5.0711 0.9790 42 1 2.1733 -5.8191 -0.0621 43 1 2.8880 -3.5916 0.8782 44 1 2.8560 -3.6196 -0.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:55 Heat of formation + Delta-G solvation = -107.679706 kcal Electronic energy + Delta-G solvation = -22847.879456 eV Core-core repulsion = 19570.968815 eV Total energy + Delta-G solvation = -3276.910641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.15051 -39.02584 -36.90499 -34.60953 -33.57313 -31.19933 -31.14481 -30.53069 -28.70313 -26.16169 -23.93429 -23.60789 -22.86836 -22.03319 -20.25979 -19.69251 -18.23061 -16.97187 -16.29366 -16.14335 -16.01121 -15.54749 -15.30663 -14.75969 -14.58342 -14.19630 -13.82465 -13.38784 -13.03822 -12.95379 -12.69942 -12.50658 -12.36858 -12.13766 -11.86721 -11.74114 -11.39666 -11.18655 -11.01049 -10.97368 -10.66045 -10.64138 -10.45491 -10.35484 -10.10537 -9.71783 -9.60187 -9.38768 -9.10420 -8.94168 -8.40157 -8.00631 -6.04890 -4.11749 2.97739 3.25621 3.34276 3.37314 3.46136 3.76827 4.38669 4.56094 4.60529 4.70603 4.89222 4.99381 5.16393 5.24940 5.26815 5.33179 5.39552 5.44092 5.48694 5.60182 5.72579 5.73990 5.77454 5.80465 5.88259 5.98931 6.05082 6.21197 6.27747 6.30743 6.38617 6.43944 6.58705 6.82238 6.93219 7.08158 7.16763 7.31426 7.66823 7.88121 7.92594 8.03854 8.36951 8.57169 8.91906 9.53625 11.00499 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042495 B = 0.003324 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.736119 B = 8422.228254 C = 8702.237001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.601 5.601 13 C 0.509 3.491 14 O -0.555 6.555 15 C -0.134 4.134 16 C -0.073 4.073 17 C -0.155 4.155 18 C 0.062 3.938 19 O -0.388 6.388 20 C 0.062 3.938 21 C -0.152 4.152 22 C 0.106 3.894 23 C -0.124 4.124 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -17.320 -3.486 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.013 4.013 12 N -0.333 5.333 13 C 0.298 3.702 14 O -0.434 6.434 15 C -0.174 4.174 16 C -0.092 4.092 17 C -0.193 4.193 18 C -0.014 4.014 19 O -0.307 6.307 20 C -0.015 4.015 21 C -0.190 4.190 22 C -0.017 4.017 23 C -0.162 4.162 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.321 -17.372 -3.910 17.957 hybrid contribution 0.626 1.420 0.123 1.557 sum 2.947 -15.951 -3.787 16.658 Atomic orbital electron populations 1.69858 1.05869 1.26400 1.50756 1.24974 0.94870 0.99122 0.95058 0.86557 0.80120 0.83855 0.77587 1.19845 1.21041 1.21042 1.21223 0.92909 0.90580 1.50454 0.92676 1.18641 0.92582 0.91639 0.94157 1.22011 1.00025 0.94805 0.99224 1.21865 0.91528 0.86642 1.01287 1.48282 1.35967 1.21223 1.27841 1.20543 0.84664 0.83261 0.81765 1.90599 1.41256 1.78959 1.32624 1.21736 0.99847 0.95127 1.00729 1.20928 0.94837 0.94270 0.99116 1.22362 0.98489 0.98951 0.99452 1.22588 0.90725 0.90123 0.98004 1.87898 1.14754 1.35179 1.92873 1.22537 0.84708 0.96864 0.97375 1.22270 0.99247 0.96890 1.00585 1.21867 0.91440 0.99529 0.88886 1.22010 0.98955 0.94304 1.00975 0.92989 0.95512 0.94437 0.87867 0.90670 0.92463 0.88978 0.89210 0.90301 0.91807 0.88643 0.93201 0.89103 0.93272 0.89090 0.90820 0.90981 0.91883 0.91193 0.92065 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.63 11.30 55.43 0.63 -24.00 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.13 2.06 -91.72 -0.19 0.94 16 10 C -0.12 -2.80 5.16 -26.59 -0.14 -2.94 16 11 C 0.11 2.14 6.43 -3.71 -0.02 2.12 16 12 N -0.60 -10.47 2.97 -172.77 -0.51 -10.99 16 13 C 0.51 8.39 7.44 -10.98 -0.08 8.31 16 14 O -0.55 -10.65 13.40 5.56 0.07 -10.58 16 15 C -0.13 -1.62 3.53 -27.88 -0.10 -1.72 16 16 C -0.07 -0.84 1.92 -90.44 -0.17 -1.01 16 17 C -0.16 -1.85 5.13 -26.58 -0.14 -1.98 16 18 C 0.06 0.68 6.84 37.21 0.25 0.93 16 19 O -0.39 -4.52 10.77 -35.23 -0.38 -4.90 16 20 C 0.06 0.58 6.84 37.20 0.25 0.83 16 21 C -0.15 -1.40 5.42 -26.60 -0.14 -1.54 16 22 C 0.11 1.64 6.34 -3.71 -0.02 1.61 16 23 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.10 2.65 6.03 -51.93 -0.31 2.34 16 28 H 0.07 1.52 7.00 -51.93 -0.36 1.16 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 31 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 32 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.35 6.05 -51.93 -0.31 1.04 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.86 5.93 -51.92 -0.31 0.55 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -29.32 336.08 -8.74 -38.05 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.56 Total: 0.79 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.03 Total: -9.22 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.11 Total: -34.99 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.30 Total: -15.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.32 -8.74 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.625 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds