Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48499 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47102 * 300.00020 * 3 2 1 6 6 H 1.48503 * 109.46874 * 60.00129 * 3 2 1 7 7 C 1.37875 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00131 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.46236 * 174.99531 * 10 9 7 12 12 C 1.53188 * 109.31219 * 181.36813 * 11 10 9 13 13 N 1.46924 * 108.77896 * 305.36919 * 12 11 10 14 14 C 1.34779 * 120.63363 * 233.58866 * 13 12 11 15 15 O 1.21282 * 120.00300 * 184.61843 * 14 13 12 16 16 C 1.50707 * 119.99700 * 4.61650 * 14 13 12 17 17 H 1.08997 * 109.48007 * 47.18132 * 16 14 13 18 18 C 1.53089 * 109.47895 * 287.14833 * 16 14 13 19 19 C 1.53186 * 109.21362 * 182.44307 * 18 16 14 20 20 C 1.53175 * 109.03088 * 56.88290 * 19 18 16 21 21 C 1.53089 * 109.21984 * 303.11562 * 20 19 18 22 22 O 1.42900 * 109.47879 * 167.20830 * 16 14 13 23 23 C 1.46932 * 118.74056 * 53.85624 * 13 12 11 24 24 C 1.53037 * 109.44557 * 295.05985 * 10 9 7 25 25 H 0.97001 * 119.99760 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47525 * 59.99722 * 9 7 2 27 27 H 1.09009 * 109.46886 * 299.99465 * 9 7 2 28 28 H 1.08997 * 109.45850 * 55.02402 * 10 9 7 29 29 H 1.09008 * 109.49399 * 61.42288 * 11 10 9 30 30 H 1.09000 * 109.50099 * 301.32262 * 11 10 9 31 31 H 1.08997 * 109.58866 * 185.58272 * 12 11 10 32 32 H 1.09000 * 109.58515 * 65.15554 * 12 11 10 33 33 H 1.09004 * 109.52582 * 302.31428 * 18 16 14 34 34 H 1.09004 * 109.52597 * 62.43771 * 18 16 14 35 35 H 1.09001 * 109.49248 * 297.05153 * 19 18 16 36 36 H 1.08998 * 109.59948 * 176.78069 * 19 18 16 37 37 H 1.09004 * 109.52538 * 183.17362 * 20 19 18 38 38 H 1.09011 * 109.52284 * 63.05531 * 20 19 18 39 39 H 1.09000 * 109.48404 * 177.55690 * 21 20 19 40 40 H 1.09001 * 109.48011 * 297.59921 * 21 20 19 41 41 H 1.08996 * 109.57850 * 65.92783 * 23 13 12 42 42 H 1.09000 * 109.59022 * 186.35544 * 23 13 12 43 43 H 1.08999 * 109.49726 * 298.57456 * 24 10 9 44 44 H 1.08998 * 109.50071 * 58.66643 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4839 -4.9837 0.1277 12 6 2.4842 -6.1433 0.1630 13 7 3.3509 -6.0565 -1.0202 14 6 3.4932 -7.1119 -1.8462 15 8 4.2750 -7.0567 -2.7717 16 6 2.6807 -8.3609 -1.6196 17 1 1.6378 -8.0909 -1.4537 18 6 3.2174 -9.1036 -0.3933 19 6 2.4271 -10.4022 -0.2046 20 6 2.5290 -11.2392 -1.4835 21 6 2.0189 -10.4140 -2.6678 22 8 2.7773 -9.2069 -2.7673 23 6 4.0644 -4.7991 -1.2826 24 6 3.0419 -3.6528 -1.3048 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5566 0.8904 28 1 2.9283 -3.5549 0.8444 29 1 0.8186 -5.1031 -0.7275 30 1 0.8984 -4.9801 1.0471 31 1 1.9457 -7.0909 0.1527 32 1 3.0908 -6.0751 1.0661 33 1 4.2715 -9.3381 -0.5418 34 1 3.1050 -8.4760 0.4908 35 1 1.3817 -10.1662 -0.0057 36 1 2.8412 -10.9639 0.6327 37 1 1.9233 -12.1394 -1.3790 38 1 3.5689 -11.5178 -1.6546 39 1 2.1298 -10.9897 -3.5867 40 1 0.9673 -10.1710 -2.5154 41 1 4.7971 -4.6237 -0.4950 42 1 4.5687 -4.8595 -2.2470 43 1 2.3620 -3.7846 -2.1464 44 1 3.5653 -2.7019 -1.4050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259912697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -104.466041 kcal Electronic energy + Delta-G solvation = -22940.055726 eV Core-core repulsion = 19663.284440 eV Total energy + Delta-G solvation = -3276.771286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58524 -38.86242 -37.17847 -34.29861 -33.74074 -32.35359 -31.71146 -30.45337 -28.14941 -25.94491 -24.67901 -23.99353 -22.76529 -21.84143 -20.65545 -19.91722 -18.80461 -17.31518 -16.66790 -16.23516 -16.00581 -15.52436 -15.02967 -14.66253 -14.54070 -14.39755 -13.93728 -13.69129 -13.32505 -13.12427 -12.99907 -12.81270 -12.61791 -12.18875 -11.88819 -11.74877 -11.44830 -11.33990 -11.20378 -11.03553 -10.77457 -10.74178 -10.70217 -10.42629 -10.18386 -9.75826 -9.67038 -9.47725 -9.28043 -8.97157 -8.38739 -8.35230 -6.01570 -4.03322 2.62974 2.83469 3.29891 3.38010 3.41361 3.80253 4.32210 4.44553 4.48473 4.49967 4.65828 4.75717 4.83531 5.00947 5.12376 5.24675 5.29086 5.33800 5.38619 5.42270 5.46809 5.54966 5.58704 5.63582 5.69025 5.74097 5.79145 5.94331 5.95436 6.05041 6.31800 6.33405 6.50172 6.61793 6.90071 6.97616 7.00709 7.09588 7.52640 7.64404 7.78735 7.97986 8.27941 8.40666 9.03316 9.60840 11.09732 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.003432 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.207682 B = 8156.289527 C = 8431.284520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.132 4.132 12 C 0.102 3.898 13 N -0.603 5.603 14 C 0.521 3.479 15 O -0.528 6.528 16 C 0.076 3.924 17 H 0.083 0.917 18 C -0.150 4.150 19 C -0.121 4.121 20 C -0.158 4.158 21 C 0.059 3.941 22 O -0.355 6.355 23 C 0.110 3.890 24 C -0.118 4.118 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -21.109 0.996 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.170 4.170 12 C -0.021 4.021 13 N -0.338 5.338 14 C 0.307 3.693 15 O -0.404 6.404 16 C 0.014 3.986 17 H 0.100 0.900 18 C -0.188 4.188 19 C -0.158 4.158 20 C -0.196 4.196 21 C -0.018 4.018 22 O -0.273 6.273 23 C -0.011 4.011 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.563 -20.913 0.324 21.217 hybrid contribution 0.086 0.925 0.345 0.991 sum 3.649 -19.988 0.669 20.330 Atomic orbital electron populations 1.69971 1.06052 1.26433 1.51068 1.25020 0.94807 0.99215 0.95437 0.86589 0.80173 0.84020 0.77547 1.19718 1.21078 1.21103 1.21278 0.93013 0.90933 1.50176 0.92507 1.19131 0.93590 0.91075 0.97164 1.21196 0.97990 0.94437 0.96330 1.22055 0.97542 0.95051 1.02329 1.21987 0.92778 0.99812 0.87510 1.48082 1.46818 1.12803 1.26069 1.20057 0.83129 0.83881 0.82235 1.90687 1.36833 1.81932 1.30951 1.21896 0.99303 0.89909 0.87453 0.89981 1.22247 1.01557 0.97477 0.97525 1.21589 1.00597 0.95683 0.97940 1.22219 1.02829 0.98980 0.95574 1.22658 0.94633 0.85498 0.99042 1.88062 1.70625 1.31292 1.37324 1.21895 0.94813 0.82360 1.02059 1.21980 0.97576 0.97262 0.98763 0.93110 0.96619 0.96606 0.92271 0.91930 0.90957 0.90404 0.91166 0.90395 0.89725 0.91413 0.90926 0.90700 0.90882 0.88428 0.92973 0.91707 0.89622 0.92290 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16 8 H 0.06 1.49 7.05 -52.49 -0.37 1.12 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 10 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 11 C -0.13 -1.99 5.36 -26.61 -0.14 -2.13 16 12 C 0.10 1.25 5.32 -3.71 -0.02 1.23 16 13 N -0.60 -8.88 2.97 -172.50 -0.51 -9.39 16 14 C 0.52 8.25 7.04 -10.98 -0.08 8.17 16 15 O -0.53 -10.47 15.98 -14.02 -0.22 -10.70 16 16 C 0.08 0.93 2.20 -27.83 -0.06 0.87 16 17 H 0.08 0.90 7.21 -51.93 -0.37 0.52 16 18 C -0.15 -1.42 5.05 -26.59 -0.13 -1.56 16 19 C -0.12 -0.88 6.03 -26.54 -0.16 -1.04 16 20 C -0.16 -1.17 6.13 -26.59 -0.16 -1.33 16 21 C 0.06 0.53 6.84 37.20 0.25 0.79 16 22 O -0.36 -4.86 9.97 -54.80 -0.55 -5.41 16 23 C 0.11 1.75 6.45 -3.48 -0.02 1.72 16 24 C -0.12 -2.13 5.20 -26.39 -0.14 -2.27 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.76 4.64 -51.93 -0.24 0.51 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.70 5.98 -51.93 -0.31 0.39 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.43 7.03 -51.93 -0.37 1.07 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -32.59 338.36 -9.33 -41.92 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.50 Total: -2.64 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.36 Total: -9.47 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.22 Total: -35.11 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.77 Total: -16.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.59 -9.33 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259912697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.549 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds