Wall clock time and date at job start Tue Mar 31 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53035 * 109.46353 * 300.34777 * 9 7 2 11 11 C 1.53197 * 109.31380 * 178.61368 * 10 9 7 12 12 N 1.46924 * 108.77401 * 54.63296 * 11 10 9 13 13 C 1.34775 * 120.62644 * 126.41502 * 12 11 10 14 14 O 1.21283 * 120.00304 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.00394 * 359.97438 * 13 12 11 16 16 C 1.52991 * 109.47261 * 180.02562 * 15 13 12 17 17 H 1.08994 * 109.48287 * 54.98225 * 16 15 13 18 18 C 1.53100 * 109.47903 * 175.00422 * 16 15 13 19 19 C 1.53183 * 109.16165 * 177.59329 * 18 16 15 20 20 C 1.53179 * 109.03591 * 303.01414 * 19 18 16 21 21 C 1.53095 * 109.16092 * 56.98439 * 20 19 18 22 22 O 1.42901 * 109.48311 * 294.94007 * 16 15 13 23 23 C 1.46923 * 118.74385 * 306.39231 * 12 11 10 24 24 C 1.53044 * 109.46012 * 180.27956 * 9 7 2 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.45916 * 60.30934 * 9 7 2 27 27 H 1.08996 * 109.49683 * 298.56765 * 10 9 7 28 28 H 1.09000 * 109.49648 * 58.66667 * 10 9 7 29 29 H 1.09001 * 109.58581 * 294.84765 * 11 10 9 30 30 H 1.09000 * 109.70573 * 174.49684 * 11 10 9 31 31 H 1.08992 * 109.47065 * 300.00538 * 15 13 12 32 32 H 1.09001 * 109.46459 * 60.00072 * 15 13 12 33 33 H 1.09000 * 109.52120 * 297.49147 * 18 16 15 34 34 H 1.08997 * 109.52489 * 57.68674 * 18 16 15 35 35 H 1.09001 * 109.54521 * 62.87973 * 19 18 16 36 36 H 1.08997 * 109.54352 * 183.15088 * 19 18 16 37 37 H 1.09001 * 109.52394 * 176.88500 * 20 19 18 38 38 H 1.08996 * 109.52713 * 297.08116 * 20 19 18 39 39 H 1.09003 * 109.48367 * 62.37461 * 21 20 19 40 40 H 1.09004 * 109.48020 * 182.39534 * 21 20 19 41 41 H 1.09002 * 109.58519 * 293.82767 * 23 12 11 42 42 H 1.08992 * 109.58944 * 173.39614 * 23 12 11 43 43 H 1.09003 * 109.49537 * 301.34252 * 24 9 7 44 44 H 1.08998 * 109.49781 * 61.43755 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 0.3702 -2.5736 1.2545 11 6 -0.4201 -3.8860 1.2396 12 7 0.5226 -5.0040 1.0984 13 6 0.5118 -6.0264 1.9765 14 8 1.2947 -6.9438 1.8489 15 6 -0.4732 -6.0297 3.1171 16 6 -0.2751 -7.2921 3.9583 17 1 0.7640 -7.3545 4.2812 18 6 -1.1886 -7.2362 5.1857 19 6 -1.0289 -8.5297 5.9906 20 6 -1.3447 -9.7240 5.0849 21 6 -0.4253 -9.6838 3.8614 22 8 -0.6012 -8.4424 3.1757 23 6 1.4770 -4.9867 -0.0186 24 6 2.2459 -3.6621 0.0105 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5608 -0.8847 27 1 0.9978 -2.5369 2.1450 28 1 -0.3224 -1.7320 1.2620 29 1 -1.1142 -3.8849 0.3993 30 1 -0.9751 -3.9914 2.1718 31 1 -0.3114 -5.1497 3.7394 32 1 -1.4883 -6.0125 2.7204 33 1 -0.9122 -6.3843 5.8069 34 1 -2.2249 -7.1329 4.8642 35 1 -0.0044 -8.6088 6.3542 36 1 -1.7174 -8.5208 6.8355 37 1 -1.1800 -10.6512 5.6339 38 1 -2.3842 -9.6709 4.7612 39 1 0.6120 -9.7777 4.1829 40 1 -0.6744 -10.5074 3.1923 41 1 0.9375 -5.0754 -0.9616 42 1 2.1754 -5.8170 0.0847 43 1 2.8885 -3.5950 -0.8674 44 1 2.8558 -3.6152 0.9127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260226809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:24 Heat of formation + Delta-G solvation = -106.476437 kcal Electronic energy + Delta-G solvation = -22890.937511 eV Core-core repulsion = 19614.079047 eV Total energy + Delta-G solvation = -3276.858463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.98263 -38.92132 -36.68266 -33.68004 -33.47455 -32.90037 -31.20315 -30.07192 -28.29738 -26.08998 -24.50049 -23.25561 -22.54515 -21.90477 -20.35243 -19.73003 -18.16427 -16.86441 -16.47865 -16.19699 -15.86528 -15.37795 -14.74001 -14.61322 -14.55959 -14.39580 -13.67116 -13.16572 -13.04961 -12.90770 -12.74460 -12.45476 -12.37574 -12.29856 -11.75903 -11.55384 -11.33830 -11.25999 -11.20247 -10.93179 -10.83040 -10.66043 -10.39164 -10.34356 -10.09260 -9.63392 -9.42852 -9.25032 -9.15328 -8.90446 -8.37609 -7.92397 -6.03359 -4.09544 3.11811 3.29383 3.34062 3.37226 3.53580 3.79652 4.40479 4.57345 4.63746 4.70002 4.79018 5.05729 5.13672 5.17987 5.25918 5.35170 5.47377 5.51773 5.59284 5.66198 5.67369 5.76660 5.79904 5.85696 5.89960 5.98511 6.00933 6.12852 6.16318 6.20322 6.31663 6.49629 6.69061 6.93210 7.06229 7.17989 7.28318 7.31647 7.66544 7.92490 8.01045 8.05046 8.40324 8.69214 8.93705 9.55477 11.02017 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.003496 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.858465 B = 8006.463635 C = 8423.513601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.103 3.897 12 N -0.604 5.604 13 C 0.513 3.487 14 O -0.549 6.549 15 C -0.134 4.134 16 C 0.108 3.892 17 H 0.064 0.936 18 C -0.152 4.152 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.063 3.937 22 O -0.365 6.365 23 C 0.113 3.887 24 C -0.123 4.123 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 -14.210 9.891 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.163 4.163 11 C -0.019 4.019 12 N -0.337 5.337 13 C 0.301 3.699 14 O -0.428 6.428 15 C -0.174 4.174 16 C 0.050 3.950 17 H 0.082 0.918 18 C -0.190 4.190 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.014 4.014 22 O -0.284 6.284 23 C -0.010 4.010 24 C -0.161 4.161 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.546 -14.537 9.617 18.013 hybrid contribution 0.432 1.073 0.314 1.199 sum -4.115 -13.464 9.931 17.229 Atomic orbital electron populations 1.69822 1.05830 1.26555 1.50917 1.24954 0.94875 0.99022 0.95096 0.86679 0.79631 0.83188 0.78615 1.20314 1.21315 1.20359 1.21182 0.92919 0.90623 1.50313 0.92781 1.18625 0.92653 0.91698 0.93984 1.22021 1.00045 0.94664 0.99547 1.22029 0.91637 0.87573 1.00650 1.48238 1.36144 1.21325 1.27962 1.20374 0.84564 0.81696 0.83239 1.90639 1.41521 1.35703 1.74918 1.21747 1.00784 0.98054 0.96794 1.21766 0.97872 0.85460 0.89919 0.91784 1.22250 1.01197 0.98318 0.97237 1.21571 1.01881 0.94472 0.97975 1.22221 1.01111 0.98656 0.97500 1.22486 0.98030 0.87067 0.93809 1.87995 1.88156 1.13146 1.39115 1.21653 0.91792 0.99528 0.87984 1.22006 0.98896 0.94345 1.00871 0.92931 0.95480 0.94303 0.87778 0.92035 0.91528 0.87613 0.88342 0.90707 0.90914 0.91828 0.91572 0.91187 0.91171 0.93352 0.89233 0.92402 0.90444 0.92248 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.31 11.30 55.43 0.63 -23.68 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.64 8.56 -34.44 -0.29 -13.93 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 10 C -0.12 -2.71 5.15 -26.61 -0.14 -2.84 16 11 C 0.10 1.83 6.34 -3.71 -0.02 1.81 16 12 N -0.60 -11.09 2.97 -172.77 -0.51 -11.60 16 13 C 0.51 9.19 7.58 -10.98 -0.08 9.11 16 14 O -0.55 -11.43 14.83 -8.81 -0.13 -11.56 16 15 C -0.13 -1.82 3.76 -27.89 -0.10 -1.93 16 16 C 0.11 1.41 2.19 -26.68 -0.06 1.35 16 17 H 0.06 0.91 7.95 -51.93 -0.41 0.49 16 18 C -0.15 -1.49 5.42 -26.59 -0.14 -1.64 16 19 C -0.12 -1.05 6.03 -26.54 -0.16 -1.21 16 20 C -0.16 -1.38 6.14 -26.59 -0.16 -1.54 16 21 C 0.06 0.70 6.84 37.21 0.25 0.96 16 22 O -0.37 -5.34 9.64 -49.60 -0.48 -5.82 16 23 C 0.11 2.13 6.43 -3.71 -0.02 2.11 16 24 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 26 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.10 2.52 6.02 -51.93 -0.31 2.20 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.98 5.93 -51.93 -0.31 0.68 16 31 H 0.11 1.25 7.69 -51.93 -0.40 0.85 16 32 H 0.10 1.23 7.94 -51.93 -0.41 0.82 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -29.98 339.29 -9.44 -39.42 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.67 Total: 0.31 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.36 Total: -7.94 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.11 Total: -35.28 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.61 Total: -17.38 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.98 -9.44 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.058 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds