Wall clock time and date at job start Tue Mar 31 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99663 * 2 1 4 4 H 1.48506 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46859 * 299.99812 * 3 2 1 6 6 H 1.48493 * 109.47436 * 60.00060 * 3 2 1 7 7 C 1.37875 * 120.00661 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00800 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99584 * 359.97438 * 7 2 1 10 10 C 1.53046 * 109.46030 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31366 * 181.38683 * 10 9 7 12 12 N 1.46925 * 108.77419 * 305.36458 * 11 10 9 13 13 C 1.34777 * 120.62933 * 233.58799 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27723 * 13 12 11 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 H 1.09008 * 109.47824 * 304.97500 * 16 15 13 18 18 C 1.53085 * 109.48337 * 184.94192 * 16 15 13 19 19 C 1.53176 * 109.16635 * 182.40658 * 18 16 15 20 20 C 1.53181 * 109.03492 * 56.98140 * 19 18 16 21 21 C 1.53088 * 109.15954 * 303.01826 * 20 19 18 22 22 O 1.42899 * 109.47977 * 64.99464 * 16 15 13 23 23 C 1.46931 * 118.73924 * 53.85839 * 12 11 10 24 24 C 1.53036 * 109.46241 * 300.07060 * 9 7 2 25 25 H 0.96998 * 120.00607 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.44839 * 60.03885 * 9 7 2 27 27 H 1.08997 * 109.49431 * 61.43144 * 10 9 7 28 28 H 1.08999 * 109.52034 * 301.35663 * 10 9 7 29 29 H 1.08994 * 109.58453 * 185.57881 * 11 10 9 30 30 H 1.09003 * 109.58452 * 65.14940 * 11 10 9 31 31 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 32 32 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 33 33 H 1.08999 * 109.52287 * 302.31580 * 18 16 15 34 34 H 1.08999 * 109.52458 * 62.49781 * 18 16 15 35 35 H 1.09002 * 109.54309 * 297.11174 * 19 18 16 36 36 H 1.09001 * 109.61625 * 176.88859 * 19 18 16 37 37 H 1.08998 * 109.52277 * 183.11692 * 20 19 18 38 38 H 1.08996 * 109.57231 * 62.95624 * 20 19 18 39 39 H 1.09000 * 109.48668 * 297.62810 * 21 20 19 40 40 H 1.09003 * 109.49200 * 177.59757 * 21 20 19 41 41 H 1.09000 * 109.58052 * 65.92898 * 23 12 11 42 42 H 1.08995 * 109.58699 * 186.35097 * 23 12 11 43 43 H 1.09003 * 109.49561 * 298.56695 * 24 9 7 44 44 H 1.08996 * 109.50266 * 58.62741 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2460 -3.6621 -0.0005 11 6 1.4770 -4.9866 -0.0355 12 7 0.5226 -5.0090 1.0813 13 6 0.5117 -6.0352 1.9549 14 8 1.2945 -6.9522 1.8229 15 6 -0.4775 -6.0466 3.0917 16 6 -0.2836 -7.3158 3.9238 17 1 -0.3562 -8.1897 3.2762 18 6 -1.3664 -7.3889 5.0035 19 6 -1.1300 -8.6300 5.8696 20 6 0.2802 -8.5630 6.4641 21 6 1.2993 -8.4447 5.3280 22 8 1.0038 -7.2874 4.5433 23 6 -0.4238 -3.8942 1.2242 24 6 0.3706 -2.5795 1.2485 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5566 -0.8908 27 1 2.8558 -3.6192 0.9019 28 1 2.8890 -3.5914 -0.8778 29 1 2.1755 -5.8174 0.0641 30 1 0.9375 -5.0711 -0.9789 31 1 -0.3175 -5.1714 3.7214 32 1 -1.4911 -6.0259 2.6915 33 1 -1.3204 -6.4957 5.6265 34 1 -2.3470 -7.4551 4.5321 35 1 -1.2250 -9.5261 5.2564 36 1 -1.8641 -8.6595 6.6748 37 1 0.4772 -9.4690 7.0373 38 1 0.3602 -7.6941 7.1173 39 1 1.2474 -9.3333 4.6989 40 1 2.3017 -8.3537 5.7465 41 1 -1.1151 -3.8915 0.3814 42 1 -0.9799 -4.0040 2.1552 43 1 0.9984 -2.5470 2.1390 44 1 -0.3216 -1.7376 1.2606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260226814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:29 Heat of formation + Delta-G solvation = -106.233236 kcal Electronic energy + Delta-G solvation = -22942.998045 eV Core-core repulsion = 19666.150128 eV Total energy + Delta-G solvation = -3276.847917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.97450 -38.90790 -36.66642 -33.66868 -33.46648 -32.89263 -31.19305 -30.03953 -28.28759 -26.07575 -24.49456 -23.24469 -22.54666 -21.89570 -20.34934 -19.71345 -18.16195 -16.85551 -16.48134 -16.18632 -15.86394 -15.37566 -14.66728 -14.60077 -14.51194 -14.45608 -13.69004 -13.13251 -13.03522 -12.87144 -12.74633 -12.51003 -12.37194 -12.26038 -11.73043 -11.55102 -11.33289 -11.25696 -11.19349 -10.95703 -10.82506 -10.59081 -10.38982 -10.31451 -10.08132 -9.62442 -9.41673 -9.23994 -9.13770 -8.88684 -8.37161 -7.91674 -6.02498 -4.08295 3.11478 3.27838 3.36318 3.40819 3.53674 3.81996 4.41829 4.57491 4.64283 4.70656 4.80173 5.06358 5.14120 5.18073 5.27167 5.36074 5.46518 5.51571 5.60450 5.65930 5.68165 5.77170 5.80910 5.87277 5.90020 5.99044 6.01243 6.12728 6.17376 6.20752 6.31228 6.50083 6.70404 6.95023 7.07530 7.19812 7.30113 7.34240 7.68256 7.93874 8.01476 8.05992 8.41819 8.69294 8.95429 9.56825 11.02978 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029169 B = 0.003621 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.701693 B = 7730.889084 C = 7957.002595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.604 5.604 13 C 0.513 3.487 14 O -0.549 6.549 15 C -0.134 4.134 16 C 0.108 3.892 17 H 0.063 0.937 18 C -0.152 4.152 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.063 3.937 22 O -0.364 6.364 23 C 0.103 3.897 24 C -0.124 4.124 25 H 0.259 0.741 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -14.472 9.624 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.337 5.337 13 C 0.301 3.699 14 O -0.428 6.428 15 C -0.174 4.174 16 C 0.050 3.950 17 H 0.081 0.919 18 C -0.190 4.190 19 C -0.158 4.158 20 C -0.195 4.195 21 C -0.014 4.014 22 O -0.282 6.282 23 C -0.020 4.020 24 C -0.162 4.162 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.557 -14.662 9.517 18.064 hybrid contribution 0.163 0.902 0.104 0.923 sum -4.394 -13.759 9.621 17.355 Atomic orbital electron populations 1.69843 1.05834 1.26308 1.51175 1.24957 0.94873 0.99046 0.95121 0.86565 0.80226 0.83859 0.77530 1.19832 1.21080 1.21064 1.21261 0.93010 0.90595 1.49970 0.92664 1.18635 0.92662 0.91738 0.93968 1.22004 0.98907 0.94312 1.00921 1.21652 0.91797 0.99627 0.87865 1.48248 1.35999 1.21351 1.28089 1.20376 0.84747 0.81928 0.82828 1.90639 1.41397 1.36360 1.74384 1.21748 0.99825 0.99635 0.96218 1.21755 0.83410 0.97424 0.92401 0.91900 1.22247 0.99262 0.99129 0.98375 1.21564 0.96893 0.98055 0.99335 1.22221 0.95805 1.02547 0.98951 1.22488 0.98316 0.89009 0.91583 1.88026 1.33701 1.40780 1.65713 1.22121 0.91561 0.87735 1.00534 1.22090 0.99982 0.94576 0.99590 0.93074 0.95505 0.92972 0.92278 0.90442 0.92435 0.88079 0.87872 0.90837 0.90815 0.91896 0.91589 0.91195 0.91107 0.93402 0.89182 0.92004 0.91508 0.94197 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.42 11.31 55.43 0.63 -23.80 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 10 C -0.12 -2.60 5.30 -26.61 -0.14 -2.74 16 11 C 0.11 2.13 6.43 -3.71 -0.02 2.11 16 12 N -0.60 -11.08 2.97 -172.50 -0.51 -11.59 16 13 C 0.51 9.18 7.58 -10.98 -0.08 9.10 16 14 O -0.55 -11.42 14.83 -8.85 -0.13 -11.55 16 15 C -0.13 -1.83 3.76 -27.88 -0.10 -1.93 16 16 C 0.11 1.41 2.19 -26.69 -0.06 1.35 16 17 H 0.06 0.86 7.96 -51.92 -0.41 0.45 16 18 C -0.15 -1.49 5.42 -26.60 -0.14 -1.63 16 19 C -0.12 -1.04 6.03 -26.55 -0.16 -1.20 16 20 C -0.16 -1.42 6.14 -26.59 -0.16 -1.59 16 21 C 0.06 0.72 6.84 37.20 0.25 0.98 16 22 O -0.36 -5.50 9.64 -49.63 -0.48 -5.98 16 23 C 0.10 1.82 6.37 -3.48 -0.02 1.80 16 24 C -0.12 -2.74 5.17 -26.39 -0.14 -2.87 16 25 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.36 7.71 -51.93 -0.40 0.96 16 32 H 0.10 1.12 7.93 -51.93 -0.41 0.71 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.99 5.94 -51.93 -0.31 0.68 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -30.33 339.34 -9.43 -39.76 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.67 Total: 0.24 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.36 Total: -8.11 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.12 Total: -35.38 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.61 Total: -17.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.33 -9.43 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.472 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds