Wall clock time and date at job start Tue Mar 31 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00358 * 2 1 4 4 H 1.48494 * 109.47437 * 269.99647 * 3 2 1 5 5 H 1.48500 * 109.46947 * 29.99727 * 3 2 1 6 6 H 1.48502 * 109.47203 * 149.99427 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49924 * 300.06644 * 9 7 2 11 11 C 1.53039 * 109.52269 * 60.14640 * 9 7 2 12 12 C 1.53042 * 109.53852 * 181.33260 * 11 9 7 13 13 C 1.53626 * 109.24348 * 298.50955 * 12 11 9 14 14 N 1.46926 * 108.54120 * 54.85316 * 13 12 11 15 15 C 1.34783 * 120.62758 * 126.36838 * 14 13 12 16 16 O 1.21281 * 119.99993 * 179.72375 * 15 14 13 17 17 C 1.50700 * 120.00087 * 359.72100 * 15 14 13 18 18 C 1.52997 * 109.46909 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.48173 * 305.02002 * 18 17 15 20 20 C 1.53096 * 109.47661 * 185.00102 * 18 17 15 21 21 C 1.53181 * 109.16280 * 182.39630 * 20 18 17 22 22 C 1.53178 * 109.03300 * 56.98248 * 21 20 18 23 23 C 1.53100 * 109.16395 * 303.01709 * 22 21 20 24 24 O 1.42894 * 109.48925 * 65.05545 * 18 17 15 25 25 C 1.46924 * 118.74051 * 306.09933 * 14 13 12 26 26 H 0.97003 * 119.99443 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.45974 * 301.35630 * 11 9 7 28 28 H 1.09008 * 109.46232 * 61.31144 * 11 9 7 29 29 H 1.08997 * 109.49594 * 58.58376 * 12 11 9 30 30 H 1.08999 * 109.49535 * 178.68401 * 12 11 9 31 31 H 1.08998 * 109.73883 * 295.12005 * 13 12 11 32 32 H 1.08996 * 109.66570 * 174.55012 * 13 12 11 33 33 H 1.09000 * 109.46523 * 59.99699 * 17 15 14 34 34 H 1.08997 * 109.46971 * 300.00590 * 17 15 14 35 35 H 1.08998 * 109.52300 * 302.30582 * 20 18 17 36 36 H 1.09004 * 109.51858 * 62.49309 * 20 18 17 37 37 H 1.09000 * 109.54215 * 176.84680 * 21 20 18 38 38 H 1.09003 * 109.54032 * 297.11816 * 21 20 18 39 39 H 1.08997 * 109.52451 * 183.11671 * 22 21 20 40 40 H 1.08999 * 109.52589 * 62.92239 * 22 21 20 41 41 H 1.08996 * 109.48261 * 297.62749 * 23 22 21 42 42 H 1.08996 * 109.49181 * 177.59938 * 23 22 21 43 43 H 1.09005 * 109.58663 * 173.64667 * 25 14 13 44 44 H 1.09005 * 109.58635 * 294.06506 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6229 -2.5566 0.8895 11 6 0.3739 -2.5833 -1.2508 12 6 -0.4166 -3.8937 -1.2346 13 6 0.5636 -5.0765 -1.2512 14 7 1.4999 -4.9231 -0.1294 15 6 1.6754 -5.9206 0.7599 16 8 2.4551 -5.7837 1.6788 17 6 0.9029 -7.2061 0.6125 18 6 1.2857 -8.1636 1.7427 19 1 2.3666 -8.3042 1.7495 20 6 0.5967 -9.5131 1.5238 21 6 0.9367 -10.4463 2.6900 22 6 0.5098 -9.7817 4.0024 23 6 1.2022 -8.4218 4.1256 24 8 0.8686 -7.6148 2.9943 25 6 2.2458 -3.6640 0.0011 26 1 -0.4849 0.8401 -0.0004 27 1 -0.3185 -1.7416 -1.2662 28 1 1.0046 -2.5507 -2.1393 29 1 -1.0289 -3.9380 -0.3339 30 1 -1.0584 -3.9422 -2.1142 31 1 1.1166 -5.0832 -2.1904 32 1 0.0128 -6.0108 -1.1424 33 1 1.1401 -7.6644 -0.3476 34 1 -0.1655 -6.9954 0.6604 35 1 -0.4825 -9.3677 1.4764 36 1 0.9472 -9.9539 0.5905 37 1 0.4045 -11.3898 2.5691 38 1 2.0108 -10.6315 2.7075 39 1 0.7981 -10.4145 4.8418 40 1 -0.5711 -9.6416 4.0051 41 1 2.2820 -8.5657 4.1636 42 1 0.8694 -7.9254 5.0371 43 1 2.8055 -3.6661 0.9366 44 1 2.9333 -3.5579 -0.8381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:41 Heat of formation + Delta-G solvation = -105.304094 kcal Electronic energy + Delta-G solvation = -22996.516306 eV Core-core repulsion = 19719.708679 eV Total energy + Delta-G solvation = -3276.807627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.93197 -38.86801 -36.61798 -33.65416 -33.49146 -32.75541 -31.24713 -30.23515 -28.25564 -25.11126 -24.80526 -24.02760 -22.46213 -21.60312 -20.34064 -19.69903 -18.15066 -16.77536 -16.46426 -16.15251 -15.90231 -15.22699 -14.74466 -14.62167 -14.37982 -14.33378 -13.60211 -13.41330 -13.12194 -12.82051 -12.72199 -12.48928 -12.33273 -12.12406 -11.92470 -11.67556 -11.32005 -11.19074 -10.96756 -10.87804 -10.79343 -10.68541 -10.36987 -10.21227 -9.91986 -9.74975 -9.41194 -9.37118 -9.13791 -8.77524 -8.35018 -7.80240 -5.98639 -4.05506 3.18541 3.31692 3.38489 3.42418 3.60987 3.84734 4.45151 4.57945 4.64649 4.70946 4.81255 5.06442 5.15207 5.17956 5.30425 5.36129 5.40506 5.45685 5.58828 5.61209 5.66861 5.68919 5.76276 5.79159 5.82302 5.91292 5.99637 6.16276 6.17388 6.37804 6.46129 6.53571 6.71570 6.87000 7.04959 7.22328 7.35510 7.38977 7.72711 7.97430 8.10433 8.12175 8.41904 8.78516 8.98506 9.59104 11.06934 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030368 B = 0.003747 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.800244 B = 7470.791007 C = 7887.578365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.607 5.607 15 C 0.510 3.490 16 O -0.541 6.541 17 C -0.134 4.134 18 C 0.108 3.892 19 H 0.064 0.936 20 C -0.152 4.152 21 C -0.121 4.121 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.363 6.363 25 C 0.118 3.882 26 H 0.260 0.740 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -19.582 0.302 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.340 5.340 15 C 0.298 3.702 16 O -0.418 6.418 17 C -0.174 4.174 18 C 0.049 3.951 19 H 0.082 0.918 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.281 6.281 25 C -0.003 4.003 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.237 -19.196 0.808 19.252 hybrid contribution 0.399 0.670 -0.155 0.795 sum -0.838 -18.525 0.653 18.556 Atomic orbital electron populations 1.69879 1.05889 1.26407 1.50621 1.24938 0.94856 0.99058 0.94999 0.86582 0.79945 0.83391 0.78023 1.20728 1.21259 1.19860 1.21092 0.92981 0.90345 1.50766 0.92521 1.18969 0.93007 0.91191 0.94787 0.95245 1.21622 0.99433 0.95371 0.98558 1.22078 0.97626 0.96712 1.00901 1.21814 0.91455 0.98955 0.89159 1.48307 1.42602 1.16174 1.26939 1.20343 0.82982 0.84987 0.81906 1.90664 1.37676 1.81483 1.31999 1.21754 1.02349 0.94472 0.98865 1.21752 0.98091 0.90981 0.84264 0.91836 1.22249 1.01876 0.95980 0.98835 1.21568 1.01370 0.98330 0.94598 1.22225 1.01685 0.97656 0.97940 1.22497 0.98507 0.90788 0.89646 1.88035 1.80382 1.46196 1.13496 1.21950 0.95018 0.82018 1.01294 0.93020 0.88718 0.94659 0.92325 0.92597 0.92030 0.91220 0.88095 0.88332 0.90941 0.90905 0.91633 0.91854 0.91172 0.91147 0.93337 0.89101 0.90384 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.54 4.96 -26.69 -0.13 -2.67 16 12 C -0.13 -2.43 6.10 -26.38 -0.16 -2.59 16 13 C 0.11 1.70 6.37 -3.49 -0.02 1.68 16 14 N -0.61 -11.52 2.97 -172.50 -0.51 -12.03 16 15 C 0.51 9.50 7.58 -10.98 -0.08 9.42 16 16 O -0.54 -12.11 14.83 -8.81 -0.13 -12.24 16 17 C -0.13 -1.79 3.76 -27.88 -0.10 -1.90 16 18 C 0.11 1.41 2.19 -26.68 -0.06 1.35 16 19 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 20 C -0.15 -1.44 5.42 -26.59 -0.14 -1.59 16 21 C -0.12 -1.04 6.03 -26.55 -0.16 -1.20 16 22 C -0.16 -1.45 6.14 -26.59 -0.16 -1.61 16 23 C 0.06 0.75 6.84 37.21 0.25 1.01 16 24 O -0.36 -5.66 9.64 -49.60 -0.48 -6.14 16 25 C 0.12 2.64 5.65 -3.71 -0.02 2.62 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.09 2.44 6.05 -51.93 -0.31 2.12 16 28 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 33 H 0.10 1.03 7.93 -51.93 -0.41 0.61 16 34 H 0.10 1.24 7.70 -51.93 -0.40 0.84 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.89 7.01 -51.93 -0.36 1.52 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -31.74 339.39 -9.46 -41.20 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.67 Total: -0.07 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.39 Total: -7.51 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.12 Total: -36.70 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.61 Total: -18.38 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.74 -9.46 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.108 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds