Wall clock time and date at job start Tue Mar 31 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00358 * 2 1 4 4 H 1.48494 * 109.47437 * 269.99647 * 3 2 1 5 5 H 1.48500 * 109.46947 * 29.99727 * 3 2 1 6 6 H 1.48502 * 109.47203 * 149.99427 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49924 * 300.06644 * 9 7 2 11 11 C 1.53039 * 109.52269 * 60.14640 * 9 7 2 12 12 C 1.53042 * 109.53852 * 181.33260 * 11 9 7 13 13 C 1.53626 * 109.24348 * 298.50955 * 12 11 9 14 14 N 1.46926 * 108.54120 * 54.85316 * 13 12 11 15 15 C 1.34783 * 120.62758 * 126.36838 * 14 13 12 16 16 O 1.21281 * 119.99993 * 179.72375 * 15 14 13 17 17 C 1.50700 * 120.00087 * 359.72100 * 15 14 13 18 18 C 1.52997 * 109.46909 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.48173 * 305.02002 * 18 17 15 20 20 C 1.53096 * 109.47661 * 185.00102 * 18 17 15 21 21 C 1.53181 * 109.16280 * 182.39630 * 20 18 17 22 22 C 1.53178 * 109.03300 * 56.98248 * 21 20 18 23 23 C 1.53100 * 109.16395 * 303.01709 * 22 21 20 24 24 O 1.42894 * 109.48925 * 65.05545 * 18 17 15 25 25 C 1.46924 * 118.74051 * 306.09933 * 14 13 12 26 26 H 0.97003 * 119.99443 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.45974 * 301.35630 * 11 9 7 28 28 H 1.09008 * 109.46232 * 61.31144 * 11 9 7 29 29 H 1.08997 * 109.49594 * 58.58376 * 12 11 9 30 30 H 1.08999 * 109.49535 * 178.68401 * 12 11 9 31 31 H 1.08998 * 109.73883 * 295.12005 * 13 12 11 32 32 H 1.08996 * 109.66570 * 174.55012 * 13 12 11 33 33 H 1.09000 * 109.46523 * 59.99699 * 17 15 14 34 34 H 1.08997 * 109.46971 * 300.00590 * 17 15 14 35 35 H 1.08998 * 109.52300 * 302.30582 * 20 18 17 36 36 H 1.09004 * 109.51858 * 62.49309 * 20 18 17 37 37 H 1.09000 * 109.54215 * 176.84680 * 21 20 18 38 38 H 1.09003 * 109.54032 * 297.11816 * 21 20 18 39 39 H 1.08997 * 109.52451 * 183.11671 * 22 21 20 40 40 H 1.08999 * 109.52589 * 62.92239 * 22 21 20 41 41 H 1.08996 * 109.48261 * 297.62749 * 23 22 21 42 42 H 1.08996 * 109.49181 * 177.59938 * 23 22 21 43 43 H 1.09005 * 109.58663 * 173.64667 * 25 14 13 44 44 H 1.09005 * 109.58635 * 294.06506 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6229 -2.5566 0.8895 11 6 0.3739 -2.5833 -1.2508 12 6 -0.4166 -3.8937 -1.2346 13 6 0.5636 -5.0765 -1.2512 14 7 1.4999 -4.9231 -0.1294 15 6 1.6754 -5.9206 0.7599 16 8 2.4551 -5.7837 1.6788 17 6 0.9029 -7.2061 0.6125 18 6 1.2857 -8.1636 1.7427 19 1 2.3666 -8.3042 1.7495 20 6 0.5967 -9.5131 1.5238 21 6 0.9367 -10.4463 2.6900 22 6 0.5098 -9.7817 4.0024 23 6 1.2022 -8.4218 4.1256 24 8 0.8686 -7.6148 2.9943 25 6 2.2458 -3.6640 0.0011 26 1 -0.4849 0.8401 -0.0004 27 1 -0.3185 -1.7416 -1.2662 28 1 1.0046 -2.5507 -2.1393 29 1 -1.0289 -3.9380 -0.3339 30 1 -1.0584 -3.9422 -2.1142 31 1 1.1166 -5.0832 -2.1904 32 1 0.0128 -6.0108 -1.1424 33 1 1.1401 -7.6644 -0.3476 34 1 -0.1655 -6.9954 0.6604 35 1 -0.4825 -9.3677 1.4764 36 1 0.9472 -9.9539 0.5905 37 1 0.4045 -11.3898 2.5691 38 1 2.0108 -10.6315 2.7075 39 1 0.7981 -10.4145 4.8418 40 1 -0.5711 -9.6416 4.0051 41 1 2.2820 -8.5657 4.1636 42 1 0.8694 -7.9254 5.0371 43 1 2.8055 -3.6661 0.9366 44 1 2.9333 -3.5579 -0.8381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:40 Heat of formation + Delta-G solvation = -124.257407 kcal Electronic energy + Delta-G solvation = -22997.338183 eV Core-core repulsion = 19719.708679 eV Total energy + Delta-G solvation = -3277.629504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23582 -40.02247 -38.24969 -35.36765 -34.47676 -33.88497 -32.94083 -31.93603 -29.35029 -27.01487 -26.15463 -25.08796 -23.61968 -23.18875 -21.38385 -21.12964 -19.68556 -18.51324 -17.83611 -17.48797 -17.01538 -16.58403 -16.51466 -15.88223 -15.46369 -15.33360 -15.07124 -14.87858 -14.64677 -14.39559 -13.88444 -13.77135 -13.56743 -13.48502 -13.17937 -12.89046 -12.85334 -12.69678 -12.56840 -12.13856 -11.97699 -11.89937 -11.84080 -11.61503 -11.55173 -11.26172 -11.19797 -10.85145 -10.63401 -10.42320 -10.26236 -9.42613 -8.11197 -6.26774 1.39714 1.40998 1.51352 1.76449 2.18253 2.43693 2.90393 3.14902 3.57685 3.77684 3.97932 3.99674 4.09952 4.15299 4.24722 4.28838 4.31670 4.43099 4.50183 4.56445 4.58701 4.64173 4.73576 4.78669 4.84978 4.89919 4.93232 5.00188 5.01326 5.11831 5.14078 5.16286 5.21477 5.31020 5.43407 5.49822 5.60294 5.61481 5.93641 6.14333 6.34427 6.41135 6.65219 6.83072 7.33398 7.41370 8.92506 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030368 B = 0.003747 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.800244 B = 7470.791007 C = 7887.578365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.041 3.959 10 H -0.019 1.019 11 C -0.105 4.105 12 C -0.129 4.129 13 C 0.110 3.890 14 N -0.613 5.613 15 C 0.500 3.500 16 O -0.590 6.590 17 C -0.125 4.125 18 C 0.101 3.899 19 H 0.045 0.955 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.150 4.150 23 C 0.054 3.946 24 O -0.401 6.401 25 C 0.131 3.869 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -21.961 -1.469 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.022 3.978 10 H -0.001 1.001 11 C -0.143 4.143 12 C -0.167 4.167 13 C -0.012 4.012 14 N -0.345 5.345 15 C 0.290 3.710 16 O -0.471 6.471 17 C -0.164 4.164 18 C 0.043 3.957 19 H 0.063 0.937 20 C -0.180 4.180 21 C -0.160 4.160 22 C -0.188 4.188 23 C -0.023 4.023 24 O -0.321 6.321 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.961 -21.600 -0.987 21.711 hybrid contribution 0.634 1.452 0.461 1.650 sum -1.327 -20.148 -0.526 20.198 Atomic orbital electron populations 1.70019 1.07123 1.27208 1.50897 1.25713 0.95726 1.02345 0.94535 0.85580 0.78540 0.79190 0.78494 1.19460 1.20869 1.19760 1.21456 0.93037 0.92021 1.51297 0.93071 1.18871 0.93187 0.91724 0.94055 1.00059 1.21415 0.98729 0.97184 0.97013 1.21994 0.97872 0.95075 1.01724 1.22097 0.90683 0.99704 0.88703 1.48415 1.42909 1.14884 1.28274 1.21416 0.82551 0.86377 0.80632 1.90639 1.39945 1.82582 1.33896 1.21874 1.01901 0.91442 1.01172 1.21917 0.97584 0.92836 0.83390 0.93676 1.22200 1.01758 0.93750 1.00323 1.21617 1.01720 0.98935 0.93695 1.22169 1.01237 0.96019 0.99367 1.22659 0.98518 0.92293 0.88812 1.87975 1.80760 1.48263 1.15092 1.21480 0.94492 0.83215 0.99999 0.92928 0.92105 0.94297 0.94027 0.89089 0.89755 0.86488 0.83732 0.86903 0.90347 0.88428 0.89386 0.91877 0.89396 0.91140 0.94056 0.89328 0.93510 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.52 11.32 21.45 0.24 -53.27 16 2 C 0.02 0.90 5.30 84.66 0.45 1.35 16 3 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -30.92 8.56 25.60 0.22 -30.70 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 9 C 0.04 2.15 2.25 -11.46 -0.03 2.12 16 10 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 11 C -0.11 -4.84 4.96 30.62 0.15 -4.68 16 12 C -0.13 -4.40 6.10 30.82 0.19 -4.21 16 13 C 0.11 3.03 6.37 86.51 0.55 3.58 16 14 N -0.61 -22.80 2.97 -818.05 -2.43 -25.23 16 15 C 0.50 18.39 7.58 87.66 0.66 19.05 16 16 O -0.59 -27.43 14.83 10.70 0.16 -27.27 16 17 C -0.12 -2.97 3.76 29.85 0.11 -2.85 16 18 C 0.10 2.48 2.19 30.63 0.07 2.55 16 19 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 20 C -0.14 -2.22 5.42 30.69 0.17 -2.06 16 21 C -0.12 -1.74 6.03 30.71 0.19 -1.56 16 22 C -0.15 -2.49 6.14 30.69 0.19 -2.30 16 23 C 0.05 1.30 6.84 72.02 0.49 1.79 16 24 O -0.40 -12.56 9.64 -135.24 -1.30 -13.87 16 25 C 0.13 6.04 5.65 86.36 0.49 6.53 16 26 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.06 3.21 6.05 -2.39 -0.01 3.20 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.12 2.19 5.93 -2.39 -0.01 2.18 16 33 H 0.14 2.17 7.93 -2.39 -0.02 2.15 16 34 H 0.11 2.43 7.70 -2.39 -0.02 2.41 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 2.41 7.01 -2.38 -0.02 2.39 16 44 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -74.71 339.39 3.55 -71.16 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.95 Total: 13.25 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 3.90 Total: -11.39 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -2.18 Total: -78.50 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.15 Total: -41.14 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.71 3.55 -71.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.098 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds