Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48501 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47043 * 300.00215 * 3 2 1 6 6 H 1.48502 * 109.47111 * 60.00358 * 3 2 1 7 7 C 1.37880 * 119.99249 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00694 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52375 * 60.07675 * 9 7 2 11 11 C 1.53042 * 109.49706 * 299.99902 * 9 7 2 12 12 C 1.53035 * 109.54021 * 178.67875 * 11 9 7 13 13 C 1.53196 * 109.30995 * 61.36728 * 12 11 9 14 14 N 1.46929 * 108.77486 * 305.36045 * 13 12 11 15 15 C 1.34766 * 120.63348 * 233.63046 * 14 13 12 16 16 O 1.21280 * 120.00139 * 179.97438 * 15 14 13 17 17 C 1.50704 * 119.99940 * 0.02562 * 15 14 13 18 18 C 1.53004 * 109.46932 * 179.97438 * 17 15 14 19 19 H 1.08995 * 109.48392 * 304.99782 * 18 17 15 20 20 C 1.53096 * 109.47801 * 184.97369 * 18 17 15 21 21 C 1.53182 * 109.15927 * 182.42292 * 20 18 17 22 22 C 1.53178 * 109.04779 * 56.96675 * 21 20 18 23 23 C 1.53085 * 109.16236 * 303.02512 * 22 21 20 24 24 O 1.42904 * 109.47917 * 65.02575 * 18 17 15 25 25 C 1.46924 * 118.73409 * 53.61317 * 14 13 12 26 26 H 0.97001 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46156 * 58.65870 * 11 9 7 28 28 H 1.09003 * 109.44815 * 298.69864 * 11 9 7 29 29 H 1.09001 * 109.49969 * 301.41757 * 12 11 9 30 30 H 1.09001 * 109.50249 * 181.31372 * 12 11 9 31 31 H 1.08998 * 109.58804 * 65.15483 * 13 12 11 32 32 H 1.09003 * 109.58394 * 185.58059 * 13 12 11 33 33 H 1.08994 * 109.47226 * 299.99850 * 17 15 14 34 34 H 1.09001 * 109.47128 * 60.00162 * 17 15 14 35 35 H 1.08995 * 109.52319 * 302.32069 * 20 18 17 36 36 H 1.09002 * 109.51931 * 62.51359 * 20 18 17 37 37 H 1.09002 * 109.53698 * 297.09677 * 21 20 18 38 38 H 1.09002 * 109.54203 * 176.84391 * 21 20 18 39 39 H 1.08990 * 109.52125 * 183.11788 * 22 21 20 40 40 H 1.09002 * 109.51888 * 62.92897 * 22 21 20 41 41 H 1.09004 * 109.48028 * 297.62454 * 23 22 21 42 42 H 1.09000 * 109.48121 * 177.58882 * 23 22 21 43 43 H 1.08999 * 109.58511 * 186.60055 * 25 14 13 44 44 H 1.09005 * 109.70744 * 66.24599 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6253 -2.5586 -0.8901 11 6 0.3704 -2.5806 1.2496 12 6 -0.4201 -3.8909 1.2341 13 6 0.5559 -5.0716 1.2528 14 7 1.4994 -4.9229 0.1364 15 6 1.6767 -5.9219 -0.7506 16 8 2.4582 -5.7866 -1.6681 17 6 0.9030 -7.2067 -0.6031 18 6 1.2874 -8.1660 -1.7314 19 1 1.1359 -7.6755 -2.6929 20 6 0.4133 -9.4205 -1.6548 21 6 0.8447 -10.4014 -2.7494 22 6 2.3335 -10.7186 -2.5781 23 6 3.1332 -9.4138 -2.6191 24 8 2.6613 -8.5350 -1.5957 25 6 2.2458 -3.6641 0.0052 26 1 -0.4850 0.8401 0.0004 27 1 -0.3221 -1.7389 1.2613 28 1 0.9988 -2.5461 2.1396 29 1 -1.0299 -3.9373 0.3318 30 1 -1.0644 -3.9376 2.1121 31 1 1.1031 -5.0785 2.1954 32 1 0.0030 -6.0044 1.1420 33 1 1.1373 -7.6636 0.3584 34 1 -0.1652 -6.9955 -0.6543 35 1 0.5334 -9.8891 -0.6780 36 1 -0.6313 -9.1462 -1.8024 37 1 0.6780 -9.9516 -3.7282 38 1 0.2641 -11.3201 -2.6653 39 1 2.6618 -11.3726 -3.3857 40 1 2.4925 -11.2133 -1.6199 41 1 3.0058 -8.9399 -3.5924 42 1 4.1889 -9.6293 -2.4548 43 1 2.8080 -3.6683 -0.9286 44 1 2.9325 -3.5548 0.8447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -105.723860 kcal Electronic energy + Delta-G solvation = -22944.016207 eV Core-core repulsion = 19667.190378 eV Total energy + Delta-G solvation = -3276.825829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94285 -38.88523 -36.63529 -33.67008 -33.50443 -32.76674 -31.26829 -30.25941 -28.26723 -25.12354 -24.81501 -24.04176 -22.47541 -21.61357 -20.34600 -19.71674 -18.15459 -16.79019 -16.45669 -16.16610 -15.91635 -15.26971 -14.73689 -14.57849 -14.49518 -14.30575 -13.62602 -13.42926 -13.13456 -12.80178 -12.74102 -12.45616 -12.30499 -12.25464 -11.94506 -11.65040 -11.32966 -11.20210 -10.99135 -10.89795 -10.79029 -10.67615 -10.38191 -10.23226 -9.93399 -9.76127 -9.42108 -9.40301 -9.13387 -8.78161 -8.36908 -7.81009 -6.00504 -4.07210 3.19012 3.29854 3.37942 3.42468 3.60808 3.81448 4.43989 4.57536 4.63886 4.70056 4.79750 5.05545 5.14315 5.18090 5.28745 5.35740 5.38318 5.46983 5.57183 5.60643 5.66282 5.68547 5.75470 5.78530 5.82705 5.89599 5.97997 6.15224 6.17174 6.36500 6.45097 6.52384 6.71392 6.85597 7.04120 7.21004 7.32276 7.37319 7.71309 7.95057 8.09317 8.11428 8.40524 8.78334 8.97111 9.57587 11.05019 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.003622 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.491547 B = 7729.673270 C = 8191.381376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.607 5.607 15 C 0.511 3.489 16 O -0.541 6.541 17 C -0.134 4.134 18 C 0.107 3.893 19 H 0.065 0.935 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.365 6.365 25 C 0.118 3.882 26 H 0.259 0.741 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 -19.459 -0.454 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.013 4.013 14 N -0.340 5.340 15 C 0.298 3.702 16 O -0.418 6.418 17 C -0.174 4.174 18 C 0.049 3.951 19 H 0.083 0.917 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.283 6.283 25 C -0.003 4.003 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.251 -19.185 -0.788 19.242 hybrid contribution 0.118 0.812 -0.063 0.823 sum -1.134 -18.374 -0.851 18.428 Atomic orbital electron populations 1.69887 1.05887 1.26304 1.50777 1.24943 0.94864 0.99088 0.94996 0.86523 0.80223 0.83676 0.77516 1.19716 1.21049 1.21063 1.21137 0.93056 0.90320 1.50574 0.92436 1.18975 0.92984 0.91245 0.94746 0.95342 1.21625 0.99453 0.95372 0.98591 1.22007 0.97652 0.96794 1.00878 1.21724 0.91339 0.98873 0.89407 1.48291 1.42272 1.16107 1.27319 1.20334 0.83076 0.84687 0.82100 1.90664 1.37275 1.81281 1.32605 1.21754 1.01090 0.93952 1.00595 1.21769 0.82183 0.92775 0.98394 0.91674 1.22244 1.00027 0.96701 0.99941 1.21572 0.96038 0.99311 0.99003 1.22217 0.95989 0.98666 1.02586 1.22491 0.98123 0.89031 0.91790 1.87998 1.25387 1.65578 1.49382 1.21945 0.95017 0.81953 1.01394 0.93081 0.88670 0.94612 0.92429 0.92528 0.92033 0.91238 0.88552 0.87879 0.91018 0.90791 0.91776 0.91616 0.91171 0.91223 0.93263 0.89194 0.90405 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 11.31 55.43 0.63 -24.46 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C 0.11 1.71 6.34 -3.71 -0.02 1.68 16 14 N -0.61 -11.52 2.97 -172.76 -0.51 -12.03 16 15 C 0.51 9.50 7.58 -10.99 -0.08 9.42 16 16 O -0.54 -12.11 14.83 -8.82 -0.13 -12.24 16 17 C -0.13 -1.79 3.76 -27.88 -0.10 -1.89 16 18 C 0.11 1.40 2.19 -26.68 -0.06 1.35 16 19 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 20 C -0.15 -1.45 5.42 -26.59 -0.14 -1.59 16 21 C -0.12 -1.05 6.03 -26.55 -0.16 -1.21 16 22 C -0.16 -1.39 6.14 -26.60 -0.16 -1.55 16 23 C 0.06 0.72 6.84 37.20 0.25 0.97 16 24 O -0.36 -5.44 9.64 -49.60 -0.48 -5.92 16 25 C 0.12 2.63 5.66 -3.71 -0.02 2.61 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 33 H 0.10 1.13 7.94 -51.93 -0.41 0.72 16 34 H 0.10 1.14 7.69 -51.93 -0.40 0.74 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.88 7.00 -51.93 -0.36 1.51 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -31.39 339.33 -9.47 -40.86 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.67 Total: -0.20 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.39 Total: -7.37 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.11 Total: -36.49 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.61 Total: -18.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.39 -9.47 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.868 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds