Wall clock time and date at job start Tue Mar 31 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48501 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47043 * 300.00215 * 3 2 1 6 6 H 1.48502 * 109.47111 * 60.00358 * 3 2 1 7 7 C 1.37880 * 119.99249 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00694 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52375 * 60.07675 * 9 7 2 11 11 C 1.53042 * 109.49706 * 299.99902 * 9 7 2 12 12 C 1.53035 * 109.54021 * 178.67875 * 11 9 7 13 13 C 1.53196 * 109.30995 * 61.36728 * 12 11 9 14 14 N 1.46929 * 108.77486 * 305.36045 * 13 12 11 15 15 C 1.34766 * 120.63348 * 233.63046 * 14 13 12 16 16 O 1.21280 * 120.00139 * 179.97438 * 15 14 13 17 17 C 1.50704 * 119.99940 * 0.02562 * 15 14 13 18 18 C 1.53004 * 109.46932 * 179.97438 * 17 15 14 19 19 H 1.08995 * 109.48392 * 304.99782 * 18 17 15 20 20 C 1.53096 * 109.47801 * 184.97369 * 18 17 15 21 21 C 1.53182 * 109.15927 * 182.42292 * 20 18 17 22 22 C 1.53178 * 109.04779 * 56.96675 * 21 20 18 23 23 C 1.53085 * 109.16236 * 303.02512 * 22 21 20 24 24 O 1.42904 * 109.47917 * 65.02575 * 18 17 15 25 25 C 1.46924 * 118.73409 * 53.61317 * 14 13 12 26 26 H 0.97001 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46156 * 58.65870 * 11 9 7 28 28 H 1.09003 * 109.44815 * 298.69864 * 11 9 7 29 29 H 1.09001 * 109.49969 * 301.41757 * 12 11 9 30 30 H 1.09001 * 109.50249 * 181.31372 * 12 11 9 31 31 H 1.08998 * 109.58804 * 65.15483 * 13 12 11 32 32 H 1.09003 * 109.58394 * 185.58059 * 13 12 11 33 33 H 1.08994 * 109.47226 * 299.99850 * 17 15 14 34 34 H 1.09001 * 109.47128 * 60.00162 * 17 15 14 35 35 H 1.08995 * 109.52319 * 302.32069 * 20 18 17 36 36 H 1.09002 * 109.51931 * 62.51359 * 20 18 17 37 37 H 1.09002 * 109.53698 * 297.09677 * 21 20 18 38 38 H 1.09002 * 109.54203 * 176.84391 * 21 20 18 39 39 H 1.08990 * 109.52125 * 183.11788 * 22 21 20 40 40 H 1.09002 * 109.51888 * 62.92897 * 22 21 20 41 41 H 1.09004 * 109.48028 * 297.62454 * 23 22 21 42 42 H 1.09000 * 109.48121 * 177.58882 * 23 22 21 43 43 H 1.08999 * 109.58511 * 186.60055 * 25 14 13 44 44 H 1.09005 * 109.70744 * 66.24599 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6253 -2.5586 -0.8901 11 6 0.3704 -2.5806 1.2496 12 6 -0.4201 -3.8909 1.2341 13 6 0.5559 -5.0716 1.2528 14 7 1.4994 -4.9229 0.1364 15 6 1.6767 -5.9219 -0.7506 16 8 2.4582 -5.7866 -1.6681 17 6 0.9030 -7.2067 -0.6031 18 6 1.2874 -8.1660 -1.7314 19 1 1.1359 -7.6755 -2.6929 20 6 0.4133 -9.4205 -1.6548 21 6 0.8447 -10.4014 -2.7494 22 6 2.3335 -10.7186 -2.5781 23 6 3.1332 -9.4138 -2.6191 24 8 2.6613 -8.5350 -1.5957 25 6 2.2458 -3.6641 0.0052 26 1 -0.4850 0.8401 0.0004 27 1 -0.3221 -1.7389 1.2613 28 1 0.9988 -2.5461 2.1396 29 1 -1.0299 -3.9373 0.3318 30 1 -1.0644 -3.9376 2.1121 31 1 1.1031 -5.0785 2.1954 32 1 0.0030 -6.0044 1.1420 33 1 1.1373 -7.6636 0.3584 34 1 -0.1652 -6.9955 -0.6543 35 1 0.5334 -9.8891 -0.6780 36 1 -0.6313 -9.1462 -1.8024 37 1 0.6780 -9.9516 -3.7282 38 1 0.2641 -11.3201 -2.6653 39 1 2.6618 -11.3726 -3.3857 40 1 2.4925 -11.2133 -1.6199 41 1 3.0058 -8.9399 -3.5924 42 1 4.1889 -9.6293 -2.4548 43 1 2.8080 -3.6683 -0.9286 44 1 2.9325 -3.5548 0.8447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:54 Heat of formation + Delta-G solvation = -124.201478 kcal Electronic energy + Delta-G solvation = -22944.817457 eV Core-core repulsion = 19667.190378 eV Total energy + Delta-G solvation = -3277.627079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.24343 -40.02498 -38.25854 -35.37221 -34.47373 -33.88676 -32.94563 -31.95303 -29.35076 -27.01672 -26.15991 -25.08733 -23.61899 -23.18831 -21.38064 -21.13658 -19.68470 -18.51802 -17.83865 -17.46729 -17.02678 -16.61075 -16.47896 -15.93178 -15.46288 -15.30713 -15.07058 -14.89628 -14.65124 -14.38882 -13.85943 -13.77717 -13.58163 -13.50319 -13.21146 -12.92204 -12.81723 -12.69975 -12.55299 -12.13682 -11.95841 -11.91534 -11.84285 -11.61652 -11.55391 -11.26466 -11.19461 -10.84534 -10.63473 -10.42889 -10.26310 -9.43375 -8.11600 -6.26720 1.38690 1.40784 1.52422 1.76915 2.16966 2.43580 2.88562 3.14521 3.57115 3.77510 3.97665 3.99730 4.10454 4.15470 4.24794 4.28722 4.31297 4.42130 4.50776 4.54872 4.61585 4.63685 4.73609 4.78898 4.85149 4.89973 4.93410 5.00489 5.00842 5.11684 5.14436 5.16351 5.21120 5.31559 5.42905 5.50237 5.60236 5.61540 5.93576 6.14265 6.34980 6.39019 6.64826 6.82849 7.32955 7.41314 8.92114 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.003622 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.491547 B = 7729.673270 C = 8191.381376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.042 3.958 10 H -0.014 1.014 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.109 3.891 14 N -0.612 5.612 15 C 0.501 3.499 16 O -0.590 6.590 17 C -0.124 4.124 18 C 0.102 3.898 19 H 0.038 0.962 20 C -0.143 4.143 21 C -0.124 4.124 22 C -0.149 4.149 23 C 0.054 3.946 24 O -0.396 6.396 25 C 0.131 3.869 26 H 0.262 0.738 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 -21.683 1.004 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.023 3.977 10 H 0.004 0.996 11 C -0.145 4.145 12 C -0.165 4.165 13 C -0.012 4.012 14 N -0.344 5.344 15 C 0.291 3.709 16 O -0.471 6.471 17 C -0.163 4.163 18 C 0.044 3.956 19 H 0.056 0.944 20 C -0.180 4.180 21 C -0.161 4.161 22 C -0.187 4.187 23 C -0.023 4.023 24 O -0.316 6.316 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.433 -21.432 0.690 21.581 hybrid contribution 0.512 1.537 -0.571 1.718 sum -1.921 -19.895 0.119 19.988 Atomic orbital electron populations 1.70013 1.07020 1.27147 1.50950 1.25689 0.95742 1.02246 0.94552 0.85544 0.78966 0.79619 0.77756 1.19484 1.20776 1.19988 1.21480 0.93001 0.92080 1.51202 0.93248 1.18870 0.93135 0.91523 0.94200 0.99592 1.21426 0.98751 0.97337 0.96949 1.21919 0.97806 0.94824 1.01997 1.22004 0.90586 0.99893 0.88736 1.48399 1.42585 1.14821 1.28625 1.21404 0.82683 0.86018 0.80837 1.90641 1.39528 1.82368 1.34537 1.21858 1.01764 0.90648 1.02066 1.21871 0.82378 0.94370 0.97025 0.94398 1.22193 1.00018 0.94913 1.00904 1.21625 0.95985 1.00027 0.98497 1.22160 0.95872 0.97119 1.03532 1.22668 0.99038 0.90010 0.90577 1.87941 1.26637 1.66590 1.50385 1.21475 0.94532 0.83296 0.99925 0.92903 0.91914 0.94597 0.93479 0.89068 0.90347 0.86371 0.85843 0.84730 0.89805 0.88988 0.92307 0.89383 0.89465 0.90727 0.94473 0.88773 0.93444 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 11.31 21.45 0.24 -52.47 16 2 C 0.02 0.94 5.30 84.65 0.45 1.39 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.54 -30.72 8.56 25.60 0.22 -30.50 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.17 2.25 -11.46 -0.03 2.15 16 10 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 11 C -0.11 -4.84 4.96 30.62 0.15 -4.68 16 12 C -0.13 -4.24 6.08 30.67 0.19 -4.05 16 13 C 0.11 3.03 6.34 86.36 0.55 3.58 16 14 N -0.61 -22.83 2.97 -818.90 -2.43 -25.26 16 15 C 0.50 18.43 7.58 87.66 0.66 19.09 16 16 O -0.59 -27.47 14.83 10.71 0.16 -27.31 16 17 C -0.12 -2.96 3.76 29.85 0.11 -2.85 16 18 C 0.10 2.52 2.19 30.63 0.07 2.59 16 19 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 20 C -0.14 -2.26 5.42 30.69 0.17 -2.09 16 21 C -0.12 -1.79 6.03 30.71 0.19 -1.61 16 22 C -0.15 -2.33 6.14 30.68 0.19 -2.14 16 23 C 0.05 1.22 6.84 72.01 0.49 1.71 16 24 O -0.40 -11.63 9.64 -135.24 -1.30 -12.94 16 25 C 0.13 6.04 5.66 86.36 0.49 6.53 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.06 3.27 6.04 -2.38 -0.01 3.25 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.12 2.19 5.93 -2.39 -0.01 2.18 16 33 H 0.12 2.33 7.94 -2.39 -0.02 2.32 16 34 H 0.13 2.37 7.69 -2.39 -0.02 2.35 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 2.44 7.00 -2.39 -0.02 2.42 16 44 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -73.22 339.33 3.54 -69.68 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.95 Total: 12.78 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 3.89 Total: -10.88 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.19 Total: -77.73 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.14 Total: -40.25 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -73.22 3.54 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.522 kcal (2) G-P(sol) polarization free energy of solvation -73.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds