Wall clock time and date at job start Tue Mar 31 2020 07:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99939 * 2 1 4 4 N 1.46497 * 109.46740 * 124.43412 * 3 2 1 5 5 C 1.46500 * 120.00231 * 277.52648 * 4 3 2 6 6 C 1.50696 * 109.47108 * 90.00216 * 5 4 3 7 7 H 1.07994 * 120.00440 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99898 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99983 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99789 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47454 * 60.00025 * 10 8 6 12 12 H 1.48499 * 109.46962 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47406 * 299.99912 * 10 8 6 14 14 C 1.34778 * 120.00206 * 97.52899 * 4 3 2 15 15 O 1.21274 * 120.00510 * 186.30639 * 14 4 3 16 16 C 1.50709 * 119.99616 * 6.30016 * 14 4 3 17 17 C 1.52998 * 109.54314 * 301.77883 * 16 14 4 18 18 C 1.52998 * 109.47067 * 305.57704 * 17 16 14 19 19 C 1.53178 * 109.54007 * 181.59586 * 16 14 4 20 20 C 1.53274 * 109.06756 * 297.03236 * 19 16 14 21 21 O 1.42907 * 109.46310 * 302.44629 * 20 19 16 22 22 C 1.42901 * 114.09333 * 61.15620 * 21 20 19 23 23 C 1.53091 * 109.41692 * 298.84141 * 22 21 20 24 24 H 1.08001 * 120.00214 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.00060 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00214 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46944 * 244.43492 * 3 2 1 28 28 H 1.09000 * 109.46998 * 4.44020 * 3 2 1 29 29 H 1.09001 * 109.47330 * 210.00055 * 5 4 3 30 30 H 1.09002 * 109.47198 * 329.99835 * 5 4 3 31 31 H 0.97000 * 120.00290 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.47132 * 65.58441 * 17 16 14 33 33 H 1.09002 * 109.46602 * 185.57984 * 17 16 14 34 34 H 1.08994 * 109.47178 * 184.54854 * 18 17 16 35 35 H 1.08997 * 109.47418 * 304.55687 * 18 17 16 36 36 H 1.09004 * 109.46644 * 64.55340 * 18 17 16 37 37 H 1.08999 * 109.51815 * 57.02743 * 19 16 14 38 38 H 1.09006 * 109.52084 * 177.20833 * 19 16 14 39 39 H 1.08997 * 109.45951 * 182.44881 * 20 19 16 40 40 H 1.09000 * 109.46815 * 62.44803 * 20 19 16 41 41 H 1.09006 * 109.48107 * 178.86099 * 22 21 20 42 42 H 1.08994 * 109.49371 * 58.83676 * 22 21 20 43 43 H 1.08999 * 109.52275 * 297.70434 * 23 22 21 44 44 H 1.09000 * 109.57406 * 177.54870 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9840 1.3375 1.1392 5 6 2.4946 1.7210 2.4657 6 6 2.0257 0.4929 3.2025 7 1 2.0865 -0.4764 2.7302 8 6 1.5190 0.6067 4.4799 9 7 1.4455 1.7870 5.0553 10 14 0.9371 -0.9154 5.3929 11 1 2.0674 -1.8675 5.5388 12 1 0.4413 -0.5267 6.7375 13 1 -0.1593 -1.5623 4.6283 14 6 4.2811 1.0144 0.9669 15 8 5.0176 0.9297 1.9267 16 6 4.8162 0.7583 -0.4185 17 6 4.0287 -0.3808 -1.0688 18 6 4.0588 -1.6080 -0.1556 19 6 6.2966 0.3745 -0.3331 20 6 7.0867 1.5529 0.2471 21 8 6.8874 2.7082 -0.5701 22 6 5.5274 3.1397 -0.6485 23 6 4.6752 2.0273 -1.2649 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 2.6292 1.3980 -0.9270 28 1 1.3578 2.1321 0.0796 29 1 3.2996 2.1959 3.0266 30 1 1.6648 2.4196 2.3589 31 1 1.0887 1.8672 5.9537 32 1 2.9961 -0.0673 -1.2224 33 1 4.4789 -0.6316 -2.0294 34 1 3.5675 -2.4437 -0.6537 35 1 5.0932 -1.8727 0.0634 36 1 3.5371 -1.3816 0.7743 37 1 6.4104 -0.4963 0.3126 38 1 6.6706 0.1413 -1.3300 39 1 8.1473 1.3027 0.2703 40 1 6.7398 1.7596 1.2595 41 1 5.4646 4.0327 -1.2706 42 1 5.1597 3.3673 0.3520 43 1 5.0164 1.8274 -2.2806 44 1 3.6303 2.3368 -1.2859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293733687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:49 Heat of formation + Delta-G solvation = -45.021327 kcal Electronic energy + Delta-G solvation = -24591.339950 eV Core-core repulsion = 21317.146380 eV Total energy + Delta-G solvation = -3274.193570 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92449 -37.86114 -36.02304 -35.01440 -32.97498 -32.17943 -31.09810 -30.40826 -27.75910 -25.78729 -25.30215 -23.42399 -23.24247 -21.54370 -20.76840 -19.80374 -18.04757 -16.59301 -16.23884 -15.99485 -15.74304 -15.54376 -14.94877 -14.59605 -14.32732 -14.03864 -13.76617 -13.44533 -13.18964 -12.82541 -12.59384 -12.29677 -12.12471 -11.80816 -11.71731 -11.49333 -11.26362 -11.19468 -11.15323 -11.02194 -10.84267 -10.69190 -10.52734 -10.22593 -10.11637 -9.97393 -9.60217 -9.27908 -8.91205 -8.62515 -8.40145 -7.67618 -6.01899 -4.04522 2.65033 3.31886 3.36375 3.37166 3.42512 3.97294 4.08864 4.46055 4.65787 4.71498 4.92135 5.11782 5.20910 5.31024 5.33957 5.38741 5.41465 5.50210 5.54381 5.58804 5.61690 5.75271 5.84445 5.90998 5.96016 5.97931 6.06663 6.09636 6.13161 6.25757 6.29618 6.35604 6.41019 6.55218 6.99769 7.03489 7.16846 7.41045 7.41482 7.56865 7.94377 8.26086 8.40537 8.92272 9.08942 9.59361 11.06550 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.006585 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.294936 B = 4251.145910 C = 4695.361475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.164 4.164 3 C 0.118 3.882 4 N -0.590 5.590 5 C 0.249 3.751 6 C -0.513 4.513 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.520 3.480 15 O -0.535 6.535 16 C -0.082 4.082 17 C -0.133 4.133 18 C -0.162 4.162 19 C -0.125 4.125 20 C 0.047 3.953 21 O -0.388 6.388 22 C 0.060 3.940 23 C -0.153 4.153 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 -1.319 -15.383 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.005 4.005 4 N -0.321 5.321 5 C 0.130 3.870 6 C -0.551 4.551 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.306 3.694 15 O -0.412 6.412 16 C -0.086 4.086 17 C -0.170 4.170 18 C -0.219 4.219 19 C -0.162 4.162 20 C -0.029 4.029 21 O -0.307 6.307 22 C -0.017 4.017 23 C -0.191 4.191 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.132 0.868 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.006 -1.148 -14.754 15.331 hybrid contribution -0.806 -1.160 0.820 1.633 sum 3.201 -2.308 -13.934 14.482 Atomic orbital electron populations 1.23672 0.95871 1.01315 1.00938 1.23452 0.96279 0.99156 0.99415 1.21183 0.93148 0.95673 0.90517 1.48173 1.07002 1.66014 1.10901 1.19258 0.94909 0.95852 0.77008 1.21318 1.40628 0.93737 0.99464 0.92523 1.24905 0.96016 0.95957 0.97265 1.69912 1.46362 1.22574 1.14836 0.86628 0.78978 0.83347 0.78887 1.20307 1.21266 1.20336 1.20087 0.82454 0.77118 0.89713 1.90611 1.57124 1.51281 1.42194 1.20938 0.96888 0.96367 0.94397 1.22143 1.01736 0.94564 0.98533 1.21934 1.02303 0.97092 1.00570 1.22031 0.92902 0.99754 1.01562 1.22917 0.99693 0.84554 0.95770 1.87839 1.25852 1.46249 1.70731 1.22529 0.82446 0.96147 1.00572 1.22525 1.01721 0.95087 0.99741 0.88847 0.89032 0.86830 0.88692 0.90903 0.94179 0.95258 0.92801 0.88980 0.91644 0.92775 0.92444 0.91253 0.90117 0.91345 0.89612 0.89972 0.89010 0.92894 0.90329 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 14.32 29.02 0.42 -2.26 16 2 C -0.16 -2.58 7.63 -36.02 -0.27 -2.86 16 3 C 0.12 1.86 4.77 -5.19 -0.02 1.83 16 4 N -0.59 -11.89 2.46 -176.43 -0.43 -12.33 16 5 C 0.25 6.33 5.14 -5.20 -0.03 6.31 16 6 C -0.51 -14.21 9.01 -34.44 -0.31 -14.52 16 7 H 0.06 1.58 7.72 -52.49 -0.41 1.17 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 10 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.52 10.22 3.72 -10.98 -0.04 10.18 16 15 O -0.53 -12.77 13.44 5.56 0.07 -12.70 16 16 C -0.08 -1.22 0.28 -155.47 -0.04 -1.26 16 17 C -0.13 -1.70 4.31 -26.73 -0.12 -1.82 16 18 C -0.16 -2.31 7.97 37.16 0.30 -2.02 16 19 C -0.12 -1.80 4.28 -26.50 -0.11 -1.91 16 20 C 0.05 0.73 6.55 37.30 0.24 0.97 16 21 O -0.39 -6.07 10.77 -35.23 -0.38 -6.44 16 22 C 0.06 0.85 6.62 37.20 0.25 1.09 16 23 C -0.15 -1.94 4.62 -26.59 -0.12 -2.06 16 24 H 0.09 1.31 7.84 -52.49 -0.41 0.90 16 25 H 0.09 1.25 8.06 -52.49 -0.42 0.83 16 26 H 0.11 1.79 4.71 -52.49 -0.25 1.55 16 27 H 0.10 1.22 2.60 -51.93 -0.14 1.08 16 28 H 0.07 1.11 7.65 -51.93 -0.40 0.72 16 29 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 30 H 0.03 0.77 7.97 -51.93 -0.41 0.35 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.09 1.14 3.09 -51.93 -0.16 0.98 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 36 H 0.07 1.24 6.25 -51.93 -0.32 0.92 16 37 H 0.08 1.23 6.56 -51.93 -0.34 0.89 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.54 5.75 -51.93 -0.30 1.24 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.87 7.38 -51.93 -0.38 0.49 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.02 5.04 -51.93 -0.26 0.76 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -31.83 327.26 -6.66 -38.49 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.60 Total: 3.61 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 0.03 Total: -6.71 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.30 Total: -38.16 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.30 Total: -19.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.83 -6.66 -38.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293733687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.528 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds