Wall clock time and date at job start Tue Mar 31 2020 07:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47301 * 2 1 4 4 C 1.34511 * 125.78903 * 90.00134 * 3 2 1 5 5 C 1.41389 * 106.84100 * 179.75229 * 4 3 2 6 6 C 1.34511 * 106.83779 * 0.37115 * 5 4 3 7 7 C 1.50698 * 125.79092 * 179.88969 * 6 5 4 8 8 H 1.09004 * 109.46784 * 19.71196 * 7 6 5 9 9 C 1.53005 * 109.47177 * 259.72044 * 7 6 5 10 10 O 1.42900 * 109.46824 * 304.99389 * 9 7 6 11 11 C 1.42897 * 113.99866 * 180.02562 * 10 9 7 12 12 N 1.46892 * 109.47493 * 139.71265 * 7 6 5 13 13 C 1.46902 * 111.00363 * 204.99948 * 12 7 6 14 14 H 1.09000 * 109.47263 * 325.00495 * 13 12 7 15 15 C 1.53006 * 109.46626 * 85.00189 * 13 12 7 16 16 C 1.52997 * 109.47489 * 205.00162 * 13 12 7 17 17 C 1.50695 * 109.47112 * 65.00091 * 16 13 12 18 18 H 1.07998 * 120.00102 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00385 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99790 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00403 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 89.99713 * 21 19 17 23 23 H 1.48502 * 109.47175 * 210.00032 * 21 19 17 24 24 H 1.48501 * 109.47008 * 329.99680 * 21 19 17 25 25 O 1.34304 * 125.78641 * 269.97787 * 3 2 1 26 26 H 1.09006 * 109.47005 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47299 * 299.99969 * 1 2 3 28 28 H 1.08997 * 109.47583 * 60.00069 * 1 2 3 29 29 H 1.09000 * 109.47299 * 240.00030 * 2 1 3 30 30 H 1.09005 * 109.47264 * 120.00108 * 2 1 3 31 31 H 1.08006 * 126.58152 * 0.02562 * 4 3 2 32 32 H 1.07997 * 126.57835 * 180.23258 * 5 4 3 33 33 H 1.08992 * 109.47113 * 64.99631 * 9 7 6 34 34 H 1.08999 * 109.46972 * 184.99929 * 9 7 6 35 35 H 1.08999 * 109.46903 * 299.99824 * 11 10 9 36 36 H 1.09002 * 109.47386 * 60.00141 * 11 10 9 37 37 H 1.09001 * 109.46946 * 180.02562 * 11 10 9 38 38 H 1.00902 * 110.99869 * 81.05042 * 12 7 6 39 39 H 1.09001 * 109.47002 * 179.97438 * 15 13 12 40 40 H 1.08993 * 109.46955 * 300.00347 * 15 13 12 41 41 H 1.09000 * 109.47050 * 60.00176 * 15 13 12 42 42 H 1.08994 * 109.47510 * 185.00428 * 16 13 12 43 43 H 1.09001 * 109.47096 * 305.00290 * 16 13 12 44 44 H 0.96992 * 120.00329 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1624 1.0911 5 6 2.7459 3.4212 0.6320 6 6 2.7245 3.3763 -0.7122 7 6 3.1218 4.4971 -1.6379 8 1 3.7469 5.2092 -1.0989 9 6 1.8659 5.2059 -2.1491 10 8 0.9924 4.2501 -2.7537 11 6 -0.2170 4.8115 -3.2675 12 7 3.8726 3.9497 -2.7756 13 6 4.7595 4.9653 -3.3588 14 1 4.2817 5.9431 -3.2980 15 6 6.0797 4.9938 -2.5858 16 6 5.0339 4.6220 -4.8242 17 6 3.7515 4.7139 -5.6103 18 1 2.8328 4.9900 -5.1144 19 6 3.7511 4.4455 -6.9628 20 7 4.8700 4.1098 -7.5669 21 14 2.1616 4.5602 -7.9373 22 1 2.0019 5.9397 -8.4633 23 1 2.2049 3.6005 -9.0697 24 1 1.0144 4.2315 -7.0535 25 8 2.2945 2.1611 -1.0895 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.1859 1.8539 2.1205 32 1 3.0475 4.2589 1.2433 33 1 1.3558 5.6878 -1.3151 34 1 2.1477 5.9578 -2.8861 35 1 -0.7706 5.2855 -2.4569 36 1 0.0218 5.5551 -4.0278 37 1 -0.8251 4.0221 -3.7092 38 1 3.2485 3.5717 -3.4725 39 1 6.7380 5.7470 -3.0187 40 1 5.8842 5.2383 -1.5418 41 1 6.5575 4.0160 -2.6466 42 1 5.7611 5.3241 -5.2319 43 1 5.4298 3.6086 -4.8921 44 1 4.8698 3.9213 -8.5183 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299147481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:40 Heat of formation + Delta-G solvation = -49.284058 kcal Electronic energy + Delta-G solvation = -23151.276834 eV Core-core repulsion = 19876.898418 eV Total energy + Delta-G solvation = -3274.378416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.20603 -38.20470 -36.27482 -34.13035 -33.19878 -32.41164 -31.43049 -28.07770 -27.43819 -27.34965 -25.67960 -23.85358 -23.06004 -21.71003 -21.14690 -19.59177 -19.37357 -16.72635 -16.31327 -16.09295 -15.83805 -15.49230 -15.12494 -14.62529 -14.56166 -14.34538 -14.18774 -13.10566 -12.98315 -12.90837 -12.51614 -12.38807 -12.36667 -12.12522 -11.75454 -11.67906 -11.55985 -11.44834 -11.24968 -11.04763 -11.00760 -10.85810 -10.64175 -10.49366 -10.25961 -9.52202 -9.41147 -9.25561 -9.04668 -8.37267 -7.96309 -7.67741 -5.99964 -4.02253 2.11079 2.90595 3.28112 3.30328 3.37557 3.40481 3.98457 4.45634 4.71514 4.86638 5.01588 5.17168 5.23014 5.29136 5.32859 5.36809 5.48046 5.51960 5.57628 5.60638 5.67080 5.74922 5.78340 5.84158 5.90327 5.94932 6.10812 6.12079 6.17632 6.22455 6.34836 6.45927 6.50900 6.83654 6.92259 6.93160 7.35624 7.48838 7.64581 7.67119 7.98595 8.03305 8.29838 8.39305 9.03407 9.61638 11.11114 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.005367 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.352119 B = 5216.239869 C = 5841.963817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.022 4.022 4 C -0.213 4.213 5 C -0.232 4.232 6 C 0.042 3.958 7 C 0.166 3.834 8 H 0.111 0.889 9 C 0.031 3.969 10 O -0.372 6.372 11 C 0.035 3.965 12 N -0.671 5.671 13 C 0.085 3.915 14 H 0.030 0.970 15 C -0.137 4.137 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.887 3.113 22 H -0.283 1.283 23 H -0.286 1.286 24 H -0.273 1.273 25 O -0.144 6.144 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.371 0.629 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.026 0.974 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 -1.816 15.781 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.073 4.073 4 C -0.233 4.233 5 C -0.252 4.252 6 C -0.010 4.010 7 C 0.055 3.945 8 H 0.129 0.871 9 C -0.047 4.047 10 O -0.290 6.290 11 C -0.062 4.062 12 N -0.306 5.306 13 C -0.024 4.024 14 H 0.048 0.952 15 C -0.195 4.195 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.212 1.212 24 H -0.198 1.198 25 O -0.038 6.038 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.045 0.955 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.088 -2.452 15.647 17.352 hybrid contribution -1.575 1.099 -0.841 2.097 sum -8.663 -1.353 14.806 17.207 Atomic orbital electron populations 1.21772 0.94343 1.01836 1.02601 1.20000 0.96067 0.88092 1.03701 1.22335 1.05089 0.95210 0.84676 1.21358 1.08388 0.94737 0.98775 1.21382 1.10548 0.99545 0.93694 1.22241 0.99997 0.85419 0.93348 1.20237 0.91775 0.89999 0.92538 0.87135 1.23316 0.92012 0.92416 0.96984 1.87949 1.30465 1.33501 1.77133 1.22685 0.86705 0.99466 0.97328 1.60612 1.23898 1.34013 1.12066 1.21689 0.91624 0.92053 0.97010 0.95156 1.21829 0.97815 1.01530 0.98310 1.19272 0.97121 0.97776 0.87478 1.21163 0.94550 1.46669 0.93410 0.92849 1.24961 0.95912 0.95216 0.97926 1.69957 1.25964 1.46867 1.10283 0.86674 0.84278 0.77669 0.79903 1.20897 1.21231 1.19757 1.84081 1.63771 1.21995 1.33979 0.92034 0.92523 0.92095 0.90109 0.89463 0.84356 0.84220 0.93555 0.91842 0.94792 0.93936 0.89883 0.80544 0.93144 0.94509 0.92492 0.95944 0.95521 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.15 0.37 -1.11 16 2 C -0.04 -0.46 6.47 -27.89 -0.18 -0.65 16 3 C -0.02 -0.33 6.57 -35.63 -0.23 -0.57 16 4 C -0.21 -2.99 10.81 -39.70 -0.43 -3.42 16 5 C -0.23 -3.45 10.80 -39.70 -0.43 -3.88 16 6 C 0.04 0.72 5.72 -35.63 -0.20 0.51 16 7 C 0.17 2.78 2.68 -68.87 -0.18 2.59 16 8 H 0.11 1.64 7.10 -51.93 -0.37 1.27 16 9 C 0.03 0.51 5.58 37.16 0.21 0.71 16 10 O -0.37 -6.69 9.44 -35.23 -0.33 -7.02 16 11 C 0.03 0.51 11.01 101.05 1.11 1.63 16 12 N -0.67 -13.44 6.03 -100.95 -0.61 -14.05 16 13 C 0.09 1.75 2.39 -67.71 -0.16 1.59 16 14 H 0.03 0.61 7.10 -51.93 -0.37 0.24 16 15 C -0.14 -2.43 9.40 37.16 0.35 -2.08 16 16 C 0.02 0.53 4.57 -27.89 -0.13 0.40 16 17 C -0.52 -14.21 8.12 -34.44 -0.28 -14.49 16 18 H 0.05 1.43 7.49 -52.49 -0.39 1.03 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 O -0.14 -2.62 10.52 5.69 0.06 -2.56 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.06 7.38 -51.93 -0.38 0.68 16 35 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.37 8.45 6.42 -39.29 -0.25 8.20 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -30.93 362.79 -7.62 -38.55 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.63 Total: 6.07 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.29 Total: -17.12 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.13 Total: -39.90 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.27 Total: -9.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.93 -7.62 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299147481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.738 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds