Wall clock time and date at job start Tue Mar 31 2020 07:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47565 * 2 1 4 4 C 1.34516 * 125.78454 * 90.00028 * 3 2 1 5 5 C 1.41383 * 106.83591 * 180.02562 * 4 3 2 6 6 C 1.34511 * 106.84136 * 359.97438 * 5 4 3 7 7 C 1.50702 * 125.78761 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46931 * 339.99685 * 7 6 5 9 9 C 1.52992 * 109.47498 * 100.00168 * 7 6 5 10 10 O 1.42906 * 109.46948 * 54.99530 * 9 7 6 11 11 C 1.42901 * 113.99922 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46955 * 220.00118 * 7 6 5 13 13 C 1.46906 * 110.99716 * 154.99747 * 12 7 6 14 14 H 1.08996 * 109.46825 * 35.00670 * 13 12 7 15 15 C 1.52997 * 109.47302 * 274.99847 * 13 12 7 16 16 C 1.52999 * 109.46507 * 154.99875 * 13 12 7 17 17 C 1.50700 * 109.47526 * 294.99912 * 16 13 12 18 18 H 1.07999 * 119.99543 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00082 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99897 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99903 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47005 * 60.00168 * 21 19 17 23 23 H 1.48506 * 109.46816 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47146 * 299.99801 * 21 19 17 25 25 O 1.34294 * 125.79076 * 270.35282 * 3 2 1 26 26 H 1.09005 * 109.47290 * 59.99275 * 1 2 3 27 27 H 1.08996 * 109.47525 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46820 * 300.00191 * 1 2 3 29 29 H 1.09005 * 109.46821 * 240.00363 * 2 1 3 30 30 H 1.08998 * 109.47416 * 120.00399 * 2 1 3 31 31 H 1.07994 * 126.58096 * 0.02562 * 4 3 2 32 32 H 1.07999 * 126.57802 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47887 * 175.00021 * 9 7 6 34 34 H 1.09002 * 109.47031 * 295.00163 * 9 7 6 35 35 H 1.09006 * 109.46987 * 300.00570 * 11 10 9 36 36 H 1.09001 * 109.47264 * 59.99876 * 11 10 9 37 37 H 1.08994 * 109.47223 * 180.02562 * 11 10 9 38 38 H 1.00897 * 111.00222 * 278.95089 * 12 7 6 39 39 H 1.09002 * 109.47153 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.46832 * 60.00356 * 15 13 12 41 41 H 1.09004 * 109.47261 * 300.00337 * 15 13 12 42 42 H 1.09001 * 109.47317 * 55.00601 * 16 13 12 43 43 H 1.09006 * 109.47194 * 175.00237 * 16 13 12 44 44 H 0.97003 * 119.99498 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1624 1.0912 5 6 2.7399 3.4233 0.6321 6 6 2.7236 3.3766 -0.7121 7 6 3.1202 4.4978 -1.6377 8 1 3.0820 5.4445 -1.0989 9 6 4.5424 4.2586 -2.1484 10 8 4.6204 2.9661 -2.7529 11 6 5.9142 2.6411 -3.2652 12 7 2.1926 4.5444 -2.7759 13 6 2.1422 5.8918 -3.3591 14 1 3.1287 6.3512 -3.2980 15 6 1.1337 6.7445 -2.5866 16 6 1.7135 5.7973 -4.8247 17 6 2.7685 5.0620 -5.6104 18 1 3.6559 4.6981 -5.1139 19 6 2.6004 4.8529 -6.9628 20 7 1.5196 5.2957 -7.5673 21 14 3.9079 3.9409 -7.9365 22 1 4.0759 2.5743 -7.3804 23 1 3.4917 3.8493 -9.3591 24 1 5.1957 4.6747 -7.8443 25 8 2.2879 2.1635 -1.0893 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.1859 1.8538 2.1204 32 1 3.0362 4.2629 1.2434 33 1 4.7968 5.0203 -2.8855 34 1 5.2419 4.3124 -1.3142 35 1 6.1974 3.3694 -4.0253 36 1 6.6419 2.6613 -2.4539 37 1 5.8903 1.6453 -3.7076 38 1 2.4402 3.8579 -3.4726 39 1 1.0960 7.7441 -3.0196 40 1 1.4392 6.8117 -1.5425 41 1 0.1471 6.2850 -2.6477 42 1 0.7683 5.2586 -4.8928 43 1 1.5901 6.8006 -5.2326 44 1 1.4015 5.1489 -8.5188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299147491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:46 Heat of formation + Delta-G solvation = -49.232915 kcal Electronic energy + Delta-G solvation = -23131.003660 eV Core-core repulsion = 19856.627462 eV Total energy + Delta-G solvation = -3274.376198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.20819 -38.20631 -36.27560 -34.11797 -33.19770 -32.41082 -31.42769 -28.06785 -27.43969 -27.34971 -25.68268 -23.83328 -23.05955 -21.71001 -21.15132 -19.58804 -19.37388 -16.68028 -16.29425 -16.11642 -15.97609 -15.42007 -15.03898 -14.70179 -14.52929 -14.35223 -14.16513 -13.10618 -13.02392 -12.89516 -12.52432 -12.41106 -12.22749 -12.14105 -11.75602 -11.70497 -11.55661 -11.43320 -11.24676 -11.03431 -10.99703 -10.85181 -10.66953 -10.48519 -10.26052 -9.52248 -9.41617 -9.25655 -9.05357 -8.36825 -7.96144 -7.67772 -5.99766 -4.02125 2.11124 2.90597 3.28105 3.31935 3.37067 3.39100 3.98142 4.45667 4.71799 4.87221 5.02400 5.17539 5.25405 5.29586 5.33021 5.36874 5.48074 5.52837 5.57489 5.60709 5.66794 5.76887 5.78393 5.86400 5.89798 5.94897 6.11126 6.16598 6.18111 6.22569 6.34836 6.45989 6.50868 6.83656 6.92172 6.93136 7.35284 7.48794 7.64491 7.67022 7.98627 8.03303 8.29811 8.39352 9.03291 9.61709 11.11255 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.005206 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.238306 B = 5377.168741 C = 5636.942820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.041 4.041 3 C -0.022 4.022 4 C -0.213 4.213 5 C -0.232 4.232 6 C 0.042 3.958 7 C 0.166 3.834 8 H 0.111 0.889 9 C 0.031 3.969 10 O -0.373 6.373 11 C 0.034 3.966 12 N -0.671 5.671 13 C 0.085 3.915 14 H 0.030 0.970 15 C -0.137 4.137 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.887 3.113 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.279 1.279 25 O -0.144 6.144 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.371 0.629 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.022 0.978 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 -5.934 15.762 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C -0.073 4.073 4 C -0.233 4.233 5 C -0.252 4.252 6 C -0.010 4.010 7 C 0.054 3.946 8 H 0.129 0.871 9 C -0.047 4.047 10 O -0.291 6.291 11 C -0.062 4.062 12 N -0.306 5.306 13 C -0.024 4.024 14 H 0.048 0.952 15 C -0.195 4.195 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.071 0.929 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.715 3.285 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.205 1.205 25 O -0.038 6.038 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.105 -6.058 15.622 17.040 hybrid contribution 1.944 -0.154 -0.825 2.117 sum 5.049 -6.212 14.796 16.823 Atomic orbital electron populations 1.21783 0.94183 1.01875 1.02843 1.19996 0.96231 0.88034 1.03519 1.22342 1.05104 0.95197 0.84678 1.21356 1.08475 0.94661 0.98774 1.21380 1.10605 0.99497 0.93696 1.22240 1.00216 0.85205 0.93348 1.20238 0.88959 0.92820 0.92539 0.87138 1.23318 0.97982 0.86433 0.97001 1.87951 1.30592 1.33348 1.77191 1.22692 0.84864 1.01311 0.97378 1.60614 1.49580 1.08336 1.12044 1.21688 0.96357 0.87321 0.97013 0.95153 1.21829 1.00413 0.98930 0.98312 1.19269 0.97341 0.97530 0.87468 1.21125 1.05060 1.36266 0.93410 0.92908 1.24956 0.95409 0.95704 0.97908 1.69952 1.26574 1.46195 1.10350 0.86737 0.82030 0.80614 0.79127 1.20064 1.21333 1.20497 1.84075 1.63693 1.22060 1.33989 0.91887 0.92040 0.92429 0.90245 0.89548 0.84359 0.84223 0.91825 0.93539 0.93934 0.94757 0.89847 0.80552 0.93142 0.94511 0.92495 0.95533 0.95948 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 37.15 0.37 -1.19 16 2 C -0.04 -0.46 6.47 -27.88 -0.18 -0.64 16 3 C -0.02 -0.33 6.58 -35.62 -0.23 -0.57 16 4 C -0.21 -2.99 10.81 -39.70 -0.43 -3.42 16 5 C -0.23 -3.45 10.80 -39.70 -0.43 -3.88 16 6 C 0.04 0.71 5.71 -35.62 -0.20 0.51 16 7 C 0.17 2.77 2.68 -68.87 -0.18 2.59 16 8 H 0.11 1.63 7.10 -51.93 -0.37 1.27 16 9 C 0.03 0.50 5.57 37.15 0.21 0.71 16 10 O -0.37 -6.67 9.45 -35.23 -0.33 -7.01 16 11 C 0.03 0.50 11.01 101.05 1.11 1.61 16 12 N -0.67 -13.42 6.03 -100.95 -0.61 -14.03 16 13 C 0.09 1.75 2.39 -67.71 -0.16 1.58 16 14 H 0.03 0.61 7.10 -51.93 -0.37 0.24 16 15 C -0.14 -2.43 9.40 37.16 0.35 -2.08 16 16 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 17 C -0.52 -14.23 8.12 -34.44 -0.28 -14.51 16 18 H 0.05 1.41 7.49 -52.49 -0.39 1.01 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 21 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 O -0.14 -2.62 10.53 5.74 0.06 -2.56 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.06 1.07 7.38 -51.93 -0.38 0.68 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.37 8.44 6.42 -39.29 -0.25 8.19 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -30.90 362.80 -7.62 -38.52 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.63 Total: 6.13 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -0.29 Total: -17.22 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.13 Total: -39.88 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.27 Total: -9.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.90 -7.62 -38.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299147491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.714 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds