Wall clock time and date at job start Tue Mar 31 2020 07:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46777 * 2 1 4 4 C 1.34514 * 125.78945 * 90.00286 * 3 2 1 5 5 C 1.41380 * 106.84047 * 180.02562 * 4 3 2 6 6 C 1.34514 * 106.84093 * 0.02562 * 5 4 3 7 7 C 1.50708 * 125.78867 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47010 * 340.00251 * 7 6 5 9 9 C 1.52999 * 109.46727 * 100.00104 * 7 6 5 10 10 O 1.42891 * 109.47561 * 55.71093 * 9 7 6 11 11 C 1.42900 * 114.00243 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46761 * 219.99543 * 7 6 5 13 13 C 1.46900 * 110.99619 * 86.90885 * 12 7 6 14 14 H 1.09003 * 109.47138 * 324.14532 * 13 12 7 15 15 C 1.53000 * 109.47366 * 84.14920 * 13 12 7 16 16 C 1.53003 * 109.46864 * 204.14933 * 13 12 7 17 17 C 1.50695 * 109.47419 * 65.00186 * 16 13 12 18 18 H 1.08003 * 119.99530 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00233 * 180.02562 * 17 16 13 20 20 N 1.31517 * 120.00345 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99883 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46984 * 90.00725 * 21 19 17 23 23 H 1.48502 * 109.46959 * 210.00430 * 21 19 17 24 24 H 1.48496 * 109.47410 * 330.00171 * 21 19 17 25 25 O 1.34299 * 108.41957 * 0.25804 * 6 5 4 26 26 H 1.09006 * 109.46562 * 60.00184 * 1 2 3 27 27 H 1.08996 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47175 * 300.00264 * 1 2 3 29 29 H 1.08995 * 109.46854 * 240.00358 * 2 1 3 30 30 H 1.08993 * 109.46836 * 119.99851 * 2 1 3 31 31 H 1.07996 * 126.58059 * 0.02562 * 4 3 2 32 32 H 1.08002 * 126.58067 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47158 * 295.70690 * 9 7 6 34 34 H 1.09002 * 109.46838 * 175.71295 * 9 7 6 35 35 H 1.09000 * 109.47728 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47045 * 299.99583 * 11 10 9 37 37 H 1.09006 * 109.47135 * 59.99796 * 11 10 9 38 38 H 1.00901 * 111.00069 * 210.85631 * 12 7 6 39 39 H 1.09005 * 109.47130 * 295.14366 * 15 13 12 40 40 H 1.09006 * 109.47050 * 55.13750 * 15 13 12 41 41 H 1.08996 * 109.47241 * 175.14041 * 15 13 12 42 42 H 1.09002 * 109.46986 * 184.99864 * 16 13 12 43 43 H 1.09003 * 109.47108 * 304.99448 * 16 13 12 44 44 H 0.96996 * 120.00163 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7396 3.4235 0.6320 6 6 2.7222 3.3771 -0.7122 7 6 3.1171 4.4989 -1.6379 8 1 3.0788 5.4454 -1.0988 9 6 4.5391 4.2608 -2.1498 10 8 4.6134 2.9753 -2.7694 11 6 5.9064 2.6525 -3.2851 12 7 2.1886 4.5450 -2.7752 13 6 1.0097 5.3627 -2.4594 14 1 0.7434 5.2266 -1.4113 15 6 1.3274 6.8368 -2.7178 16 6 -0.1620 4.9309 -3.3435 17 6 -0.5547 3.5167 -3.0019 18 1 -0.0215 2.9794 -2.2316 19 6 -1.5938 2.9084 -3.6735 20 7 -1.9369 1.6743 -3.3751 21 14 -2.5155 3.8375 -5.0064 22 1 -1.8592 3.6027 -6.3176 23 1 -3.9199 3.3583 -5.0630 24 1 -2.5002 5.2901 -4.6982 25 8 2.2872 2.1638 -1.0894 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1859 1.8540 2.1204 32 1 3.0366 4.2629 1.2433 33 1 5.2379 4.3024 -1.3143 34 1 4.7969 5.0303 -2.8775 35 1 5.8799 1.6616 -3.7385 36 1 6.1921 3.3886 -4.0365 37 1 6.6339 2.6608 -2.4733 38 1 2.6509 4.8829 -3.6060 39 1 2.1037 7.1676 -2.0277 40 1 1.6767 6.9590 -3.7431 41 1 0.4283 7.4342 -2.5666 42 1 -1.0097 5.5946 -3.1729 43 1 0.1348 4.9827 -4.3911 44 1 -2.6682 1.2465 -3.8473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299147501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:51 Heat of formation + Delta-G solvation = -35.524521 kcal Electronic energy + Delta-G solvation = -23531.287592 eV Core-core repulsion = 20257.505834 eV Total energy + Delta-G solvation = -3273.781757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84040 -38.17122 -36.55349 -33.67162 -32.99188 -32.08238 -31.40818 -28.25515 -27.53352 -27.40706 -25.72301 -23.45687 -22.67310 -21.46901 -20.81630 -19.70141 -19.23331 -16.60748 -16.44728 -16.17428 -15.75669 -15.33809 -14.84296 -14.50154 -14.22831 -13.95709 -13.58475 -13.51100 -12.99725 -12.59728 -12.48709 -12.44015 -12.07635 -12.03540 -12.02074 -11.69943 -11.64542 -11.33810 -11.21929 -10.88634 -10.82557 -10.68213 -10.39587 -10.08955 -9.74533 -9.52767 -9.50315 -9.16857 -8.89316 -8.29446 -7.67065 -7.59652 -5.77640 -3.69336 2.47228 3.20268 3.43362 3.50209 3.52363 3.63935 3.90388 4.59186 4.65190 4.98283 5.10388 5.31649 5.39888 5.42484 5.45245 5.50818 5.55231 5.60644 5.62632 5.64744 5.74509 5.76793 5.80011 5.85749 5.90907 6.00243 6.30457 6.34014 6.38237 6.45214 6.49451 6.61152 6.79516 6.85465 7.10339 7.15712 7.22552 7.27932 7.38672 7.77647 7.98475 8.06502 8.12355 8.86890 9.39445 9.85946 11.36425 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.007462 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.285763 B = 3751.529003 C = 4962.830729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C -0.002 4.002 4 C -0.227 4.227 5 C -0.235 4.235 6 C 0.032 3.968 7 C 0.166 3.834 8 H 0.079 0.921 9 C 0.062 3.938 10 O -0.359 6.359 11 C 0.031 3.969 12 N -0.645 5.645 13 C 0.096 3.904 14 H 0.071 0.929 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.481 4.481 18 H 0.082 0.918 19 C 0.061 3.939 20 N -0.906 5.906 21 Si 0.870 3.130 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.271 1.271 25 O -0.119 6.119 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.338 0.662 39 H 0.040 0.960 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.010 0.990 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.805 3.977 5.531 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 C -0.054 4.054 4 C -0.246 4.246 5 C -0.255 4.255 6 C -0.021 4.021 7 C 0.055 3.945 8 H 0.097 0.903 9 C -0.015 4.015 10 O -0.277 6.277 11 C -0.066 4.066 12 N -0.276 5.276 13 C -0.013 4.013 14 H 0.089 0.911 15 C -0.243 4.243 16 C -0.040 4.040 17 C -0.520 4.520 18 H 0.101 0.899 19 C -0.137 4.137 20 N -0.547 5.547 21 Si 0.699 3.301 22 H -0.208 1.208 23 H -0.219 1.219 24 H -0.196 1.196 25 O -0.011 6.011 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.157 0.843 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.168 3.021 5.306 14.515 hybrid contribution 0.070 1.632 -0.559 1.727 sum 13.238 4.653 4.748 14.814 Atomic orbital electron populations 1.21805 0.93205 1.01734 1.04192 1.20000 0.97064 0.87803 1.02707 1.22438 1.03010 0.95285 0.84649 1.21272 1.09866 0.94762 0.98694 1.21323 1.11011 0.99406 0.93755 1.21950 1.01458 0.86164 0.92562 1.20074 0.90414 0.92223 0.91793 0.90344 1.22742 0.96015 0.86410 0.96347 1.88185 1.29602 1.33601 1.76313 1.22720 0.85412 1.01183 0.97298 1.60325 1.06846 1.57445 1.03015 1.21670 0.91558 0.87206 1.00894 0.91072 1.22636 1.01191 0.99840 1.00659 1.19591 0.91860 0.98056 0.94498 1.21078 1.14347 0.96117 1.20432 0.89950 1.24966 0.97207 0.94753 0.96820 1.69894 1.29737 1.12450 1.42638 0.86949 0.79181 0.80706 0.83291 1.20787 1.21882 1.19570 1.84205 1.62352 1.21322 1.33247 0.89441 0.92644 0.93115 0.90481 0.90239 0.84677 0.84762 0.92933 0.92935 0.89697 0.94490 0.94726 0.84277 0.94088 0.92986 0.92242 0.96700 0.97149 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.89 37.16 0.37 -2.39 16 2 C -0.04 -0.64 6.47 -27.88 -0.18 -0.82 16 3 C 0.00 -0.03 6.57 -35.62 -0.23 -0.27 16 4 C -0.23 -4.00 10.81 -39.70 -0.43 -4.43 16 5 C -0.24 -4.09 10.80 -39.70 -0.43 -4.52 16 6 C 0.03 0.61 5.48 -35.62 -0.20 0.41 16 7 C 0.17 2.68 2.68 -68.86 -0.18 2.49 16 8 H 0.08 1.10 7.08 -51.93 -0.37 0.73 16 9 C 0.06 0.84 5.45 37.16 0.20 1.05 16 10 O -0.36 -5.83 10.05 -35.23 -0.35 -6.18 16 11 C 0.03 0.36 11.01 101.05 1.11 1.47 16 12 N -0.64 -12.19 5.69 -100.95 -0.57 -12.77 16 13 C 0.10 1.89 2.34 -67.71 -0.16 1.73 16 14 H 0.07 1.51 7.71 -51.93 -0.40 1.11 16 15 C -0.18 -2.82 9.16 37.16 0.34 -2.48 16 16 C 0.00 -0.06 3.72 -27.88 -0.10 -0.16 16 17 C -0.48 -13.97 9.39 -34.45 -0.32 -14.30 16 18 H 0.08 2.64 7.91 -52.48 -0.42 2.23 16 19 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 20 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 21 Si 0.87 22.45 27.47 -169.99 -4.67 17.78 16 22 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 25 O -0.12 -2.64 10.46 5.73 0.06 -2.58 16 26 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 32 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.34 5.78 7.96 -39.29 -0.31 5.46 16 39 H 0.04 0.53 7.46 -51.93 -0.39 0.14 16 40 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 43 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -33.77 362.46 -7.34 -41.11 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.73 Total: 5.21 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -0.31 Total: -20.48 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.20 Total: -40.33 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.29 Total: -8.76 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.77 -7.34 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299147501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds