Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00100 * 2 1 4 4 H 1.48502 * 109.47059 * 269.91115 * 3 2 1 5 5 H 1.48499 * 109.47508 * 29.90841 * 3 2 1 6 6 H 1.48501 * 109.47471 * 149.91242 * 3 2 1 7 7 C 1.38949 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00397 * 25.68366 * 7 2 1 9 9 N 1.37101 * 119.99996 * 205.68265 * 7 2 1 10 10 C 1.34772 * 119.99839 * 52.56793 * 9 7 2 11 11 O 1.21294 * 120.00289 * 176.00330 * 10 9 7 12 12 C 1.50698 * 120.00353 * 356.00344 * 10 9 7 13 13 O 1.42895 * 109.47414 * 174.31761 * 12 10 9 14 14 C 1.42910 * 114.00046 * 175.40760 * 13 12 10 15 15 C 1.54259 * 110.02842 * 270.73880 * 14 13 12 16 16 C 1.54971 * 104.15851 * 217.13466 * 15 14 13 17 17 C 1.54888 * 102.77443 * 37.89078 * 16 15 14 18 18 C 1.53875 * 110.02904 * 153.52172 * 14 13 12 19 19 C 1.46504 * 120.00191 * 232.56603 * 9 7 2 20 20 C 1.54266 * 110.03263 * 302.09415 * 19 9 7 21 21 C 1.54967 * 104.16189 * 95.75307 * 20 19 9 22 22 C 1.54890 * 102.77596 * 37.88765 * 21 20 19 23 23 C 1.53871 * 110.02914 * 59.31204 * 19 9 7 24 24 H 0.97002 * 119.99915 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47541 * 294.32512 * 12 10 9 26 26 H 1.09007 * 109.46732 * 54.31744 * 12 10 9 27 27 H 1.08997 * 110.01161 * 32.12989 * 14 13 12 28 28 H 1.09001 * 110.49211 * 335.78342 * 15 14 13 29 29 H 1.09007 * 110.48695 * 98.43329 * 15 14 13 30 30 H 1.09000 * 110.72106 * 279.57859 * 16 15 14 31 31 H 1.08995 * 110.92408 * 156.29927 * 16 15 14 32 32 H 1.09000 * 110.48766 * 203.40593 * 17 16 15 33 33 H 1.08998 * 110.59986 * 80.81598 * 17 16 15 34 34 H 1.09008 * 110.02968 * 238.56623 * 18 14 13 35 35 H 1.08995 * 110.03900 * 359.95394 * 18 14 13 36 36 H 1.08997 * 110.01672 * 180.69858 * 19 9 7 37 37 H 1.09000 * 110.48681 * 214.39932 * 20 19 9 38 38 H 1.08999 * 110.48603 * 337.04174 * 20 19 9 39 39 H 1.09007 * 110.71828 * 279.57814 * 21 20 19 40 40 H 1.08994 * 110.92257 * 156.29350 * 21 20 19 41 41 H 1.09003 * 110.48754 * 203.41030 * 22 21 20 42 42 H 1.09002 * 110.60040 * 80.81646 * 22 21 20 43 43 H 1.08996 * 110.03769 * 359.95028 * 23 19 9 44 44 H 1.08994 * 110.03561 * 121.38396 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4975 2.0453 -1.4001 5 1 1.4447 2.6532 0.6981 6 1 3.5448 1.4407 0.7019 7 6 2.0088 -1.2034 0.0005 8 1 1.5489 -2.0927 -0.4044 9 7 3.2782 -1.2618 0.5151 10 6 3.5239 -0.7990 1.7568 11 8 4.6303 -0.9164 2.2400 12 6 2.4242 -0.1357 2.5451 13 8 2.8888 0.1466 3.8666 14 6 1.9546 0.8718 4.6688 15 6 2.1657 2.3888 4.4844 16 6 1.9157 2.9804 5.8948 17 6 2.5436 1.9163 6.8288 18 6 2.1944 0.5713 6.1587 19 6 4.3676 -1.8274 -0.2847 20 6 4.0294 -3.2775 -0.6879 21 6 3.4214 -3.1445 -2.1071 22 6 4.2837 -2.0275 -2.7458 23 6 4.5288 -1.0327 -1.5924 24 1 -0.4850 0.8401 0.0004 25 1 2.1358 0.7942 2.0550 26 1 1.5624 -0.8012 2.5974 27 1 0.9358 0.6002 4.3923 28 1 3.1854 2.5954 4.1595 29 1 1.4475 2.7897 3.7690 30 1 0.8475 3.0811 6.0870 31 1 2.4194 3.9402 6.0091 32 1 2.1014 1.9731 7.8234 33 1 3.6245 2.0452 6.8849 34 1 1.2917 0.1548 6.6056 35 1 3.0228 -0.1282 6.2700 36 1 5.2978 -1.8049 0.2830 37 1 4.9331 -3.8864 -0.7157 38 1 3.3013 -3.7052 0.0014 39 1 2.3758 -2.8414 -2.0518 40 1 3.5231 -4.0765 -2.6630 41 1 3.7408 -1.5438 -3.5578 42 1 5.2288 -2.4323 -3.1078 43 1 3.7961 -0.2268 -1.6324 44 1 5.5373 -0.6246 -1.6594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330870227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -88.354103 kcal Electronic energy + Delta-G solvation = -23671.015303 eV Core-core repulsion = 20394.942683 eV Total energy + Delta-G solvation = -3276.072620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.43799 -38.46180 -36.83638 -35.19911 -34.09010 -31.82804 -28.77844 -28.44165 -28.07921 -27.36431 -25.86510 -24.42508 -20.64182 -20.26560 -20.03758 -19.91734 -19.19140 -17.14858 -16.62225 -15.98604 -15.64172 -15.26604 -14.84501 -14.57055 -14.23398 -14.00251 -13.68032 -13.38729 -13.19409 -12.92231 -12.57143 -12.17903 -12.06222 -11.58027 -11.13278 -11.09665 -11.02085 -10.96036 -10.86164 -10.78737 -10.67647 -10.53555 -10.51187 -10.42473 -10.28153 -10.07472 -10.05097 -9.85348 -9.07505 -8.90269 -8.53425 -7.54264 -6.59238 -4.26822 3.00762 3.13364 3.24570 3.72364 3.80784 4.05890 4.69974 4.75253 4.75922 4.82132 5.10971 5.26307 5.32882 5.47923 5.54778 5.59870 5.64579 5.73867 5.84084 5.94009 5.96822 6.01124 6.02130 6.08560 6.14542 6.20080 6.23295 6.24475 6.29000 6.31291 6.37797 6.39335 6.44898 6.45413 6.52855 6.59860 6.86704 6.95389 7.05044 7.58985 7.72860 7.86009 8.43631 8.91815 9.27182 9.71156 10.49847 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.005684 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.533762 B = 4925.258044 C = 5442.056206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.075 3.925 3 Si 0.842 3.158 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.343 4.343 8 H 0.104 0.896 9 N -0.466 5.466 10 C 0.501 3.499 11 O -0.577 6.577 12 C 0.062 3.938 13 O -0.363 6.363 14 C 0.081 3.919 15 C -0.154 4.154 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.121 4.121 19 C 0.130 3.870 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.129 4.129 24 H 0.275 0.725 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 1.637 4.139 4.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.133 4.133 3 Si 0.667 3.333 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.290 3.710 11 O -0.459 6.459 12 C -0.017 4.017 13 O -0.282 6.282 14 C 0.023 3.977 15 C -0.191 4.191 16 C -0.159 4.159 17 C -0.159 4.159 18 C -0.158 4.158 19 C 0.027 3.973 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.168 4.168 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.365 1.599 4.442 5.281 hybrid contribution -0.119 1.253 -0.472 1.344 sum 2.246 2.852 3.971 5.380 Atomic orbital electron populations 1.69794 1.06127 1.28179 1.44195 1.25630 0.95006 0.98011 0.94630 0.87431 0.82103 0.84616 0.79125 1.20095 1.20558 1.18144 1.18897 0.87540 0.96632 1.43957 0.87865 1.43713 1.08345 1.56179 1.10711 1.20102 0.88403 0.80582 0.81952 1.90539 1.24928 1.60498 1.69957 1.22354 0.96970 0.99454 0.82937 1.87985 1.41699 1.75100 1.23386 1.22767 0.92959 0.90703 0.91298 1.22987 1.02739 0.96111 0.97307 1.22423 1.00583 0.98147 0.94732 1.22322 1.00901 0.94560 0.98116 1.22182 1.02402 0.98074 0.93160 1.21644 0.91640 0.92430 0.91620 1.22553 0.99931 0.96315 0.97190 1.22525 1.00918 0.97057 0.95199 1.22235 0.98881 0.96744 0.97461 1.22455 1.00643 0.99161 0.94497 0.91404 0.92495 0.89462 0.91817 0.90503 0.91702 0.91520 0.91624 0.91746 0.91447 0.91170 0.90197 0.89945 0.92350 0.91171 0.90003 0.93016 0.92293 0.92701 0.90725 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.07 13.96 55.50 0.77 -21.29 16 2 C 0.08 1.90 4.11 -17.47 -0.07 1.83 16 3 Si 0.84 20.05 22.97 -169.99 -3.90 16.14 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.46 5.95 56.52 0.34 -6.12 16 7 C -0.34 -8.50 7.11 -14.93 -0.11 -8.61 16 8 H 0.10 2.68 6.57 -52.49 -0.34 2.33 16 9 N -0.47 -11.15 1.79 -106.55 -0.19 -11.35 16 10 C 0.50 12.75 5.89 -10.99 -0.06 12.69 16 11 O -0.58 -15.88 15.86 -14.30 -0.23 -16.11 16 12 C 0.06 1.45 4.26 36.00 0.15 1.60 16 13 O -0.36 -8.04 9.44 -55.08 -0.52 -8.56 16 14 C 0.08 1.42 3.36 -25.62 -0.09 1.33 16 15 C -0.15 -2.47 6.54 -25.03 -0.16 -2.64 16 16 C -0.12 -1.51 6.91 -24.69 -0.17 -1.68 16 17 C -0.12 -1.47 6.83 -25.07 -0.17 -1.65 16 18 C -0.12 -1.72 6.61 -25.61 -0.17 -1.89 16 19 C 0.13 2.74 3.35 -66.81 -0.22 2.52 16 20 C -0.12 -2.21 6.00 -25.03 -0.15 -2.36 16 21 C -0.12 -2.00 6.53 -24.70 -0.16 -2.17 16 22 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 23 C -0.13 -2.49 6.28 -25.61 -0.16 -2.65 16 24 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.06 1.36 3.39 -51.93 -0.18 1.18 16 26 H 0.09 2.05 7.79 -51.93 -0.40 1.64 16 27 H 0.06 1.08 7.88 -51.93 -0.41 0.68 16 28 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 29 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 36 H 0.08 1.81 6.95 -51.93 -0.36 1.45 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.36 7.97 -51.93 -0.41 0.95 16 39 H 0.08 1.54 6.50 -51.92 -0.34 1.20 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.61 5.49 -51.93 -0.29 1.33 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -28.52 331.23 -8.21 -36.73 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.42 Total: 5.15 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.72 Total: -5.71 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.58 Total: -32.64 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.75 Total: -24.66 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -3.90 Total: 16.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.52 -8.21 -36.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330870227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.628 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds