Wall clock time and date at job start Tue Mar 31 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47639 * 2 1 4 4 C 1.53000 * 109.47491 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46750 * 59.99844 * 4 3 2 6 6 O 1.42906 * 109.46997 * 60.00061 * 5 4 3 7 7 C 1.42903 * 113.99788 * 149.99473 * 6 5 4 8 8 C 1.50697 * 109.46710 * 180.02562 * 7 6 5 9 9 O 1.21293 * 120.00651 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99874 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00272 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00356 * 140.25588 * 11 10 8 13 13 C 1.38951 * 119.99567 * 320.25594 * 11 10 8 14 14 N 1.31415 * 119.99837 * 161.32875 * 13 11 10 15 15 Si 1.86798 * 120.00162 * 341.32403 * 13 11 10 16 16 H 1.48502 * 109.46982 * 93.61120 * 15 13 11 17 17 H 1.48501 * 109.47266 * 213.60939 * 15 13 11 18 18 H 1.48494 * 109.47191 * 333.61165 * 15 13 11 19 19 C 1.46503 * 120.00056 * 359.97438 * 10 8 7 20 20 C 1.52998 * 117.49967 * 182.39800 * 19 10 8 21 21 C 1.52993 * 117.49754 * 113.73691 * 19 10 8 22 22 C 1.52994 * 109.47542 * 300.00493 * 5 4 3 23 23 C 1.53001 * 109.46971 * 239.99618 * 2 1 3 24 24 H 1.09007 * 109.46950 * 59.99490 * 1 2 3 25 25 H 1.08997 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46860 * 300.00320 * 1 2 3 27 27 H 1.09004 * 109.46825 * 119.99985 * 2 1 3 28 28 H 1.09003 * 109.46612 * 59.99735 * 3 2 1 29 29 H 1.08998 * 109.47303 * 300.00498 * 3 2 1 30 30 H 1.09000 * 109.46738 * 300.00297 * 4 3 2 31 31 H 1.08997 * 109.47345 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47228 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47245 * 300.00175 * 7 6 5 34 34 H 1.08996 * 109.47159 * 60.00530 * 7 6 5 35 35 H 0.97003 * 119.99550 * 179.97438 * 14 13 11 36 36 H 1.09003 * 115.54642 * 328.07019 * 19 10 8 37 37 H 1.09000 * 117.49731 * 0.02562 * 20 19 10 38 38 H 1.08998 * 117.49443 * 145.02049 * 20 19 10 39 39 H 1.08995 * 117.50136 * 214.98286 * 21 19 10 40 40 H 1.09007 * 117.49860 * 359.97438 * 21 19 10 41 41 H 1.08997 * 109.47242 * 180.02562 * 22 5 4 42 42 H 1.09004 * 109.46699 * 299.99905 * 22 5 4 43 43 H 1.08997 * 109.47594 * 300.00650 * 23 2 1 44 44 H 1.09003 * 109.46639 * 60.01157 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.7209 -1.2483 6 8 3.6047 1.3944 -2.4154 7 6 4.4773 1.2914 -3.5423 8 6 3.8801 2.0343 -4.7095 9 8 2.8121 2.5963 -4.5885 10 7 4.5324 2.0734 -5.8884 11 6 3.9894 2.7497 -6.9501 12 1 4.6242 3.3333 -7.6003 13 6 2.6223 2.6842 -7.1897 14 7 2.0440 3.5885 -7.9478 15 14 1.6064 1.3106 -6.4343 16 1 1.0294 1.7726 -5.1463 17 1 0.5091 0.9382 -7.3630 18 1 2.4730 0.1292 -6.1930 19 6 5.8221 1.3942 -6.0348 20 6 6.5393 1.5224 -7.3802 21 6 5.8858 0.1961 -6.9841 22 6 3.5704 -0.7215 -1.2484 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.9330 0.9286 0.8909 31 1 3.9335 2.4700 0.0011 32 1 5.1705 0.7212 -1.2481 33 1 5.4456 1.7253 -3.2929 34 1 4.6067 0.2420 -3.8069 35 1 1.0896 3.5425 -8.1153 36 1 6.4391 1.3583 -5.1369 37 1 6.0517 2.1124 -8.1562 38 1 7.6282 1.5704 -7.3674 39 1 6.5449 -0.6280 -6.7111 40 1 4.9678 -0.0871 -7.4994 41 1 3.9345 -1.2356 -2.1379 42 1 3.9334 -1.2352 -0.3581 43 1 1.6766 -1.7490 -1.2493 44 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331893667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:27 Heat of formation + Delta-G solvation = -56.799126 kcal Electronic energy + Delta-G solvation = -23577.806294 eV Core-core repulsion = 20303.102000 eV Total energy + Delta-G solvation = -3274.704294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 7.78 seconds Orbital eigenvalues (eV) -39.57049 -38.82229 -36.61419 -35.86265 -32.88589 -31.76737 -31.41131 -30.71020 -27.89244 -25.96424 -24.25483 -22.62305 -21.97947 -21.42776 -21.14793 -19.61166 -19.21929 -17.17949 -16.39741 -16.05048 -15.78470 -15.34350 -14.84894 -14.35100 -14.16736 -13.99844 -13.74977 -13.32291 -13.22648 -12.82057 -12.73329 -12.58349 -12.28831 -12.06346 -11.66336 -11.55288 -11.42433 -11.23813 -11.10963 -10.96518 -10.72659 -10.38931 -10.32305 -10.18103 -10.03473 -9.97486 -9.93289 -9.60720 -9.19152 -8.47076 -8.39982 -7.49427 -6.15842 -3.93437 3.28921 3.52220 3.66705 3.75680 3.84845 4.47777 4.54238 4.68041 4.73631 4.78833 4.87779 5.15980 5.18179 5.21737 5.28795 5.37874 5.45275 5.48497 5.53815 5.57859 5.61031 5.62621 5.65595 5.73228 5.81479 5.81938 5.89240 5.91072 6.05589 6.08288 6.13164 6.23964 6.28842 6.33805 6.39824 6.42370 6.63244 6.68238 6.82618 7.45828 7.85347 7.98566 8.77066 8.92216 9.43917 9.80776 10.87551 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.005954 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.021405 B = 4701.813997 C = 5451.670847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.113 4.113 4 C -0.111 4.111 5 C 0.084 3.916 6 O -0.347 6.347 7 C 0.052 3.948 8 C 0.447 3.553 9 O -0.519 6.519 10 N -0.435 5.435 11 C -0.349 4.349 12 H 0.098 0.902 13 C 0.089 3.911 14 N -0.866 5.866 15 Si 0.918 3.082 16 H -0.246 1.246 17 H -0.315 1.315 18 H -0.285 1.285 19 C 0.060 3.940 20 C -0.170 4.170 21 C -0.199 4.199 22 C -0.140 4.140 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.852 -9.729 13.960 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.151 4.151 4 C -0.149 4.149 5 C 0.026 3.974 6 O -0.265 6.265 7 C -0.029 4.029 8 C 0.237 3.763 9 O -0.400 6.400 10 N -0.157 5.157 11 C -0.474 4.474 12 H 0.115 0.885 13 C -0.120 4.120 14 N -0.501 5.501 15 Si 0.750 3.250 16 H -0.172 1.172 17 H -0.245 1.245 18 H -0.211 1.211 19 C -0.046 4.046 20 C -0.208 4.208 21 C -0.238 4.238 22 C -0.178 4.178 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.970 -9.222 13.939 17.437 hybrid contribution -0.078 -0.939 0.162 0.956 sum 4.892 -10.161 14.101 18.056 Atomic orbital electron populations 1.21828 0.95517 1.01285 1.01873 1.21093 0.95335 0.96357 0.97850 1.21525 0.94824 0.96258 1.02475 1.21578 0.96920 1.00801 0.95583 1.22106 0.96936 0.91709 0.86642 1.88098 1.45453 1.74193 1.18764 1.22299 0.93329 0.99603 0.87626 1.19910 0.87800 0.85526 0.83093 1.90546 1.21030 1.46513 1.81881 1.43063 1.17317 1.46076 1.09271 1.18756 0.92620 1.28440 1.07558 0.88466 1.25326 0.97104 0.95955 0.93620 1.69739 1.11533 1.31670 1.37188 0.86280 0.79185 0.80103 0.79414 1.17180 1.24518 1.21123 1.21829 0.89723 0.98804 0.94202 1.23130 0.98086 1.00376 0.99197 1.23291 1.03100 0.91650 1.05746 1.22020 0.97173 0.96832 1.01735 1.21512 0.94777 0.99753 0.98961 0.92350 0.93068 0.92988 0.91943 0.92520 0.90359 0.91244 0.91328 0.92537 0.91739 0.92005 0.91800 0.87325 0.87015 0.89398 0.89514 0.88526 0.91966 0.91498 0.92604 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.09 -1.06 2.72 -90.62 -0.25 -1.31 16 3 C -0.11 -1.49 5.06 -26.73 -0.14 -1.62 16 4 C -0.11 -1.36 5.66 -26.73 -0.15 -1.51 16 5 C 0.08 1.16 2.92 -26.73 -0.08 1.08 16 6 O -0.35 -6.51 8.17 -55.14 -0.45 -6.96 16 7 C 0.05 0.96 4.86 36.00 0.17 1.14 16 8 C 0.45 11.00 5.96 -10.99 -0.07 10.93 16 9 O -0.52 -15.06 11.37 -14.36 -0.16 -15.22 16 10 N -0.43 -10.55 2.56 -107.73 -0.28 -10.82 16 11 C -0.35 -9.84 8.77 -14.93 -0.13 -9.97 16 12 H 0.10 2.84 6.95 -52.49 -0.36 2.47 16 13 C 0.09 2.67 4.89 -17.47 -0.09 2.58 16 14 N -0.87 -26.90 13.96 55.50 0.77 -26.12 16 15 Si 0.92 25.37 24.58 -169.99 -4.18 21.19 16 16 H -0.25 -7.20 6.09 56.52 0.34 -6.86 16 17 H -0.31 -8.54 7.11 56.52 0.40 -8.14 16 18 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 19 C 0.06 1.12 5.85 -67.93 -0.40 0.72 16 20 C -0.17 -2.88 9.80 -26.69 -0.26 -3.14 16 21 C -0.20 -3.35 10.37 -26.70 -0.28 -3.63 16 22 C -0.14 -1.74 5.63 -26.71 -0.15 -1.89 16 23 C -0.11 -1.52 5.06 -26.71 -0.14 -1.65 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.29 7.68 -51.93 -0.40 0.90 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.67 7.78 -51.93 -0.40 0.27 16 33 H 0.06 1.02 7.51 -51.93 -0.39 0.63 16 34 H 0.06 1.04 7.84 -51.93 -0.41 0.64 16 35 H 0.27 8.00 8.31 -40.82 -0.34 7.66 16 36 H 0.11 1.65 6.99 -51.93 -0.36 1.29 16 37 H 0.11 2.18 6.48 -51.93 -0.34 1.84 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 41 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.27 7.68 -51.93 -0.40 0.87 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -34.01 340.48 -8.50 -42.50 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.74 Total: -0.08 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.60 Total: -9.63 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.50 Total: -36.94 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.61 Total: -22.18 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.18 Total: 21.19 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.01 -8.50 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331893667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.294 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.78 seconds