Wall clock time and date at job start Tue Mar 31 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46844 * 2 1 4 4 C 1.53001 * 109.47110 * 299.99943 * 3 2 1 5 5 C 1.52992 * 109.47268 * 300.00253 * 4 3 2 6 6 C 1.52999 * 109.47025 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47017 * 174.99756 * 6 5 4 8 8 O 1.21279 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00011 * 179.97438 * 7 6 5 10 10 C 1.47584 * 134.49657 * 179.97438 * 9 7 6 11 11 C 1.53946 * 86.12025 * 155.36378 * 10 9 7 12 12 O 1.42897 * 113.74068 * 269.15867 * 11 10 9 13 13 C 1.50700 * 113.74246 * 137.95222 * 11 10 9 14 14 H 1.07998 * 119.99659 * 4.91778 * 13 11 10 15 15 C 1.37870 * 120.00275 * 184.91298 * 13 11 10 16 16 N 1.31521 * 119.99939 * 13.83955 * 15 13 11 17 17 Si 1.86793 * 120.00241 * 193.83635 * 15 13 11 18 18 H 1.48503 * 109.47305 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47166 * 299.99995 * 17 15 13 20 20 H 1.48499 * 109.46987 * 59.99962 * 17 15 13 21 21 C 1.47585 * 134.49296 * 0.02562 * 9 7 6 22 22 C 1.52996 * 109.47514 * 60.00034 * 5 4 3 23 23 C 1.52997 * 109.47010 * 240.00411 * 2 1 3 24 24 H 1.09001 * 109.47347 * 60.00080 * 1 2 3 25 25 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47301 * 299.99571 * 1 2 3 27 27 H 1.09001 * 109.47347 * 119.99920 * 2 1 3 28 28 H 1.08995 * 109.46903 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47215 * 59.99863 * 3 2 1 30 30 H 1.08998 * 109.46641 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47055 * 60.00317 * 4 3 2 32 32 H 1.09008 * 109.46837 * 299.99943 * 5 4 3 33 33 H 1.08992 * 109.47552 * 55.00039 * 6 5 4 34 34 H 1.08994 * 109.47209 * 294.99505 * 6 5 4 35 35 H 1.09003 * 113.76727 * 41.05948 * 10 9 7 36 36 H 1.09000 * 113.86995 * 269.68290 * 10 9 7 37 37 H 0.96698 * 114.00098 * 171.44601 * 12 11 10 38 38 H 0.97007 * 119.99483 * 5.87247 * 16 15 13 39 39 H 1.08994 * 113.77423 * 90.33340 * 21 9 7 40 40 H 1.09010 * 113.76672 * 318.93187 * 21 9 7 41 41 H 1.08995 * 109.46935 * 59.99858 * 22 5 4 42 42 H 1.08999 * 109.47467 * 180.02562 * 22 5 4 43 43 H 1.09004 * 109.47267 * 180.02562 * 23 2 1 44 44 H 1.09004 * 109.46816 * 299.99691 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 -1.2493 5 6 2.0398 1.4426 -2.4985 6 6 1.5303 2.1642 -3.7477 7 6 2.1313 1.5289 -4.9750 8 8 2.8918 0.5910 -4.8617 9 7 1.8228 2.0023 -6.1986 10 6 2.2102 1.6400 -7.5758 11 6 0.8804 2.2842 -8.0077 12 8 -0.2148 1.3675 -8.0535 13 6 0.9912 3.1298 -9.2502 14 1 1.9240 3.1725 -9.7928 15 6 -0.0982 3.8487 -9.6943 16 7 -1.1379 4.0204 -8.9073 17 14 -0.0976 4.5789 -11.4135 18 1 -1.3749 5.3000 -11.6456 19 1 1.0372 5.5274 -11.5481 20 1 0.0458 3.4905 -12.4135 21 6 0.9625 3.0919 -6.6993 22 6 1.5299 0.0001 -2.4985 23 6 2.0399 -0.7212 -1.2493 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 0.8900 30 1 1.8936 3.1913 -1.2494 31 1 0.4399 2.1638 -1.2492 32 1 3.1299 1.4426 -2.4984 33 1 1.8190 3.2143 -3.7039 34 1 0.4440 2.0876 -3.7938 35 1 2.2551 0.5651 -7.7512 36 1 3.0923 2.1673 -7.9390 37 1 -1.0739 1.7879 -8.1960 38 1 -1.1050 3.7157 -7.9869 39 1 1.4784 4.0463 -6.8039 40 1 0.0107 3.1766 -6.1747 41 1 0.4400 0.0001 -2.4985 42 1 1.8936 -0.5139 -3.3883 43 1 3.1300 -0.7216 -1.2491 44 1 1.6766 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334181562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:57 Heat of formation + Delta-G solvation = -85.001428 kcal Electronic energy + Delta-G solvation = -22943.051001 eV Core-core repulsion = 19667.123764 eV Total energy + Delta-G solvation = -3275.927237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00666 -39.06236 -37.41862 -34.28816 -33.29974 -32.39984 -30.73619 -29.45462 -27.77592 -25.87259 -25.49464 -24.45595 -22.62963 -21.30607 -20.11135 -18.68157 -18.41705 -17.81292 -16.38366 -15.76753 -15.52142 -15.22313 -14.68307 -14.60722 -14.32715 -13.92953 -13.84864 -13.51207 -13.12203 -12.89099 -12.63689 -12.37392 -12.14254 -11.96814 -11.84543 -11.51895 -11.44249 -11.40578 -11.14623 -10.98088 -10.93898 -10.86122 -10.56097 -10.23322 -10.17273 -10.09792 -9.95419 -9.35160 -9.27584 -8.84100 -8.41127 -7.86827 -6.70307 -4.49536 3.15526 3.29473 3.33569 3.46677 3.51619 4.31009 4.61345 4.64346 4.72337 4.78806 4.94148 5.11023 5.18610 5.27150 5.34093 5.36417 5.46521 5.57029 5.58227 5.63242 5.68740 5.73780 5.78053 5.85655 5.91142 5.96737 6.03990 6.06868 6.14591 6.15706 6.19207 6.27951 6.35726 6.36410 6.38559 6.53308 6.60200 6.64421 6.78275 7.64474 8.07594 8.38066 8.43832 8.70772 8.82988 9.20831 10.61192 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036387 B = 0.003521 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.311894 B = 7950.224745 C = 8132.361534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.117 4.117 5 C -0.067 4.067 6 C -0.131 4.131 7 C 0.528 3.472 8 O -0.559 6.559 9 N -0.635 5.635 10 C 0.122 3.878 11 C 0.216 3.784 12 O -0.566 6.566 13 C -0.618 4.618 14 H 0.065 0.935 15 C 0.037 3.963 16 N -0.898 5.898 17 Si 1.066 2.934 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.070 3.930 22 C -0.121 4.121 23 C -0.111 4.111 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.374 0.626 38 H 0.268 0.732 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -2.115 14.335 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.149 4.149 4 C -0.155 4.155 5 C -0.086 4.086 6 C -0.171 4.171 7 C 0.318 3.682 8 O -0.439 6.439 9 N -0.369 5.369 10 C 0.000 4.000 11 C 0.175 3.825 12 O -0.373 6.373 13 C -0.656 4.656 14 H 0.083 0.917 15 C -0.169 4.169 16 N -0.534 5.534 17 Si 0.893 3.107 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.053 4.053 22 C -0.159 4.159 23 C -0.148 4.148 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.223 0.777 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.577 -2.295 13.618 14.049 hybrid contribution 0.515 -0.233 1.063 1.203 sum 3.092 -2.528 14.681 15.214 Atomic orbital electron populations 1.21942 0.95494 1.01503 1.01853 1.21111 0.95874 0.96034 0.98084 1.21528 1.00494 0.95345 0.97556 1.21645 1.01036 0.98626 0.94160 1.20868 1.00857 0.94888 0.91939 1.21661 1.01956 1.00674 0.92793 1.20282 0.80940 0.83603 0.83349 1.90596 1.37727 1.29530 1.86094 1.50222 1.47160 1.34629 1.04866 1.23259 0.98108 1.00677 0.77981 1.20148 0.84399 0.86414 0.91547 1.86253 1.18388 1.37302 1.95356 1.22240 1.01594 1.30080 1.11666 0.91705 1.25975 0.91889 0.93882 1.05109 1.70950 1.31675 1.43531 1.07265 0.83587 0.76344 0.76429 0.74334 1.20554 1.21125 1.21001 1.24444 0.92898 0.91784 0.96169 1.21736 1.00046 0.95289 0.98797 1.21527 1.00508 0.98533 0.94281 0.91815 0.93031 0.93156 0.91799 0.92114 0.92276 0.92185 0.91634 0.90701 0.89534 0.89445 0.91136 0.89508 0.77664 0.92042 0.89620 0.91734 0.92477 0.89875 0.92154 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.50 37.16 0.32 -1.12 16 2 C -0.09 -0.92 3.20 -90.62 -0.29 -1.21 16 3 C -0.11 -1.09 5.45 -26.73 -0.15 -1.24 16 4 C -0.12 -1.26 4.93 -26.73 -0.13 -1.40 16 5 C -0.07 -0.90 1.84 -90.63 -0.17 -1.06 16 6 C -0.13 -1.97 4.93 -27.88 -0.14 -2.10 16 7 C 0.53 10.32 7.77 -10.98 -0.09 10.23 16 8 O -0.56 -12.24 14.69 5.56 0.08 -12.16 16 9 N -0.63 -13.14 3.61 -178.25 -0.64 -13.78 16 10 C 0.12 2.66 8.22 -2.97 -0.02 2.64 16 11 C 0.22 5.07 1.08 -90.83 -0.10 4.98 16 12 O -0.57 -13.91 13.45 -35.23 -0.47 -14.38 16 13 C -0.62 -15.62 8.56 -34.44 -0.29 -15.92 16 14 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 15 C 0.04 0.94 5.26 -17.82 -0.09 0.85 16 16 N -0.90 -23.40 12.80 55.43 0.71 -22.69 16 17 Si 1.07 22.62 29.93 -169.99 -5.09 17.54 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 C 0.07 1.46 7.05 -2.95 -0.02 1.44 16 22 C -0.12 -1.69 4.67 -26.73 -0.12 -1.81 16 23 C -0.11 -1.30 5.45 -26.73 -0.15 -1.44 16 24 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 32 H 0.07 1.10 7.96 -51.92 -0.41 0.69 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 37 H 0.37 8.96 6.95 45.56 0.32 9.28 16 38 H 0.27 6.77 5.53 -40.82 -0.23 6.54 16 39 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 40 H 0.06 1.29 7.80 -51.92 -0.41 0.88 16 41 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 42 H 0.08 1.42 5.95 -51.93 -0.31 1.11 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -28.09 338.16 -8.41 -36.50 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.65 Total: 11.05 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.44 Total: -7.17 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.07 Total: -36.47 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.39 Total: -26.54 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.09 Total: 17.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.09 -8.41 -36.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334181562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.503 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds