Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48508 * 109.47106 * 269.99703 * 3 2 1 5 5 H 1.48497 * 109.47498 * 29.99449 * 3 2 1 6 6 H 1.48500 * 109.47354 * 149.99983 * 3 2 1 7 7 C 1.37880 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99280 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.53036 * 109.46106 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31458 * 181.37147 * 10 9 7 12 12 N 1.46931 * 108.77307 * 305.36142 * 11 10 9 13 13 C 1.34770 * 120.63170 * 233.58302 * 12 11 10 14 14 O 1.21280 * 120.00072 * 0.02562 * 13 12 11 15 15 C 1.50710 * 120.00032 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47295 * 180.02562 * 15 13 12 17 17 O 1.42903 * 110.81196 * 303.33754 * 16 15 13 18 18 C 1.54891 * 110.75763 * 66.66768 * 16 15 13 19 19 C 1.54267 * 104.19324 * 156.25900 * 18 16 15 20 20 C 1.53876 * 106.59870 * 336.39035 * 19 18 16 21 21 C 1.54261 * 106.59990 * 0.02562 * 20 19 18 22 22 C 1.46936 * 118.73553 * 53.86126 * 12 11 10 23 23 C 1.53041 * 109.44280 * 300.05747 * 9 7 2 24 24 H 0.96999 * 119.99843 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.45956 * 60.01801 * 9 7 2 26 26 H 1.09003 * 109.49651 * 61.41840 * 10 9 7 27 27 H 1.09000 * 109.52510 * 301.34166 * 10 9 7 28 28 H 1.08994 * 109.59022 * 185.57943 * 11 10 9 29 29 H 1.08992 * 109.70706 * 65.21886 * 11 10 9 30 30 H 1.09000 * 109.46965 * 59.99914 * 15 13 12 31 31 H 1.09006 * 109.46899 * 300.00422 * 15 13 12 32 32 H 0.96700 * 114.00436 * 56.66296 * 17 16 15 33 33 H 1.09004 * 110.48613 * 37.58272 * 18 16 15 34 34 H 1.08994 * 110.48745 * 274.93690 * 18 16 15 35 35 H 1.08995 * 110.03032 * 217.10762 * 19 18 16 36 36 H 1.08998 * 110.03405 * 95.67701 * 19 18 16 37 37 H 1.08998 * 110.02768 * 119.28860 * 20 19 18 38 38 H 1.08999 * 110.02894 * 240.66545 * 20 19 18 39 39 H 1.09000 * 110.48928 * 142.28640 * 21 20 19 40 40 H 1.09001 * 110.48691 * 264.79667 * 21 20 19 41 41 H 1.08996 * 109.58156 * 65.92659 * 22 12 11 42 42 H 1.09000 * 109.58067 * 186.34831 * 22 12 11 43 43 H 1.09004 * 109.49903 * 298.56782 * 23 9 7 44 44 H 1.08994 * 109.50237 * 58.67533 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2457 -3.6622 0.0005 11 6 1.4766 -4.9866 -0.0341 12 7 0.5225 -5.0087 1.0831 13 6 0.5117 -6.0348 1.9567 14 8 1.2949 -6.9515 1.8253 15 6 -0.4735 -6.0432 3.0972 16 6 -0.2754 -7.3092 3.9331 17 8 -0.4045 -8.4786 3.1219 18 6 1.0987 -7.2859 4.6475 19 6 0.9125 -8.2258 5.8565 20 6 -0.5967 -8.2654 6.1541 21 6 -1.2750 -7.3487 5.1152 22 6 -0.4239 -3.8938 1.2259 23 6 0.3698 -2.5787 1.2493 24 1 -0.4850 0.8401 -0.0004 25 1 0.6250 -2.5571 -0.8899 26 1 2.8557 -3.6192 0.9028 27 1 2.8885 -3.5917 -0.8769 28 1 2.1751 -5.8175 0.0656 29 1 0.9372 -5.0739 -0.9771 30 1 -1.4886 -6.0245 2.7004 31 1 -0.3119 -5.1657 3.7234 32 1 0.1998 -8.5027 2.3674 33 1 1.3375 -6.2764 4.9823 34 1 1.8787 -7.6641 3.9868 35 1 1.4530 -7.8362 6.7190 36 1 1.2710 -9.2254 5.6110 37 1 -0.9705 -9.2843 6.0530 38 1 -0.7884 -7.8959 7.1615 39 1 -2.2271 -7.7727 4.7962 40 1 -1.4218 -6.3498 5.5260 41 1 -1.1153 -3.8913 0.3833 42 1 -0.9797 -4.0035 2.1571 43 1 0.9972 -2.5457 2.1400 44 1 -0.3227 -1.7371 1.2601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334329753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -112.013835 kcal Electronic energy + Delta-G solvation = -23220.549671 eV Core-core repulsion = 19943.451087 eV Total energy + Delta-G solvation = -3277.098583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31277 -38.55150 -36.74479 -34.50399 -33.60209 -31.85065 -30.60260 -29.93694 -28.76298 -26.60907 -25.43091 -22.96539 -22.33725 -20.62500 -20.23461 -19.78762 -18.36483 -17.00852 -16.48888 -16.20386 -15.60549 -15.44393 -15.04529 -14.87336 -14.55855 -13.90204 -13.33923 -13.26689 -13.11800 -12.77583 -12.68172 -12.32305 -12.27082 -11.81823 -11.67720 -11.53010 -11.37443 -11.16066 -11.07254 -10.98910 -10.76901 -10.68015 -10.45299 -10.38432 -10.15817 -9.73653 -9.71336 -9.42112 -9.23500 -8.99172 -8.43669 -8.09506 -6.08634 -4.14857 2.84432 3.24648 3.31979 3.35219 3.37335 4.23342 4.36505 4.52569 4.56195 4.76628 4.92921 5.14799 5.20891 5.29663 5.41181 5.44667 5.55304 5.63570 5.68172 5.74233 5.77690 5.86236 5.88809 5.95132 6.00128 6.03618 6.08704 6.17746 6.20740 6.24870 6.37546 6.41775 6.58670 6.81259 6.96243 7.05941 7.20270 7.59892 7.78697 7.85023 7.95100 7.97895 8.34175 8.45366 8.88568 9.50668 10.96915 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.003844 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.734328 B = 7281.903342 C = 7562.030417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.110 3.890 12 N -0.596 5.596 13 C 0.515 3.485 14 O -0.565 6.565 15 C -0.166 4.166 16 C 0.148 3.852 17 O -0.561 6.561 18 C -0.147 4.147 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.112 4.112 22 C 0.100 3.900 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.387 0.613 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -11.837 8.464 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.012 4.012 12 N -0.327 5.327 13 C 0.304 3.696 14 O -0.447 6.447 15 C -0.206 4.206 16 C 0.106 3.894 17 O -0.373 6.373 18 C -0.185 4.185 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.022 4.022 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.241 0.759 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.256 -12.299 8.805 15.473 hybrid contribution 0.830 1.365 -0.460 1.663 sum -2.426 -10.934 8.345 13.967 Atomic orbital electron populations 1.69828 1.05858 1.26526 1.50881 1.24956 0.94876 0.99080 0.95009 0.86611 0.79905 0.83455 0.78141 1.20689 1.21219 1.19969 1.21204 0.92965 0.90556 1.50380 0.92697 1.18635 0.92648 0.91772 0.93973 1.22001 0.98908 0.94188 1.01009 1.21720 0.91797 0.99791 0.87889 1.48279 1.35593 1.21122 1.27660 1.20529 0.84154 0.81805 0.83086 1.90484 1.42307 1.36532 1.75347 1.22406 1.00312 1.00865 0.97031 1.21703 0.94685 0.83587 0.89381 1.86323 1.65268 1.41546 1.44124 1.23030 0.98204 0.99911 0.97325 1.22061 0.96037 0.99933 0.97685 1.22058 0.95434 0.99949 0.98227 1.22372 0.98301 1.00362 0.93909 1.22193 0.91557 0.87586 1.00851 1.22103 1.00001 0.94489 0.99603 0.92939 0.95450 0.92983 0.92114 0.90261 0.92169 0.88373 0.87967 0.75933 0.91364 0.89997 0.92212 0.91916 0.91766 0.92044 0.90802 0.90269 0.91734 0.91349 0.94214 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 11.30 55.43 0.63 -23.31 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 11 C 0.11 1.94 6.43 -3.71 -0.02 1.91 16 12 N -0.60 -10.11 2.97 -172.50 -0.51 -10.63 16 13 C 0.52 8.27 7.30 -10.98 -0.08 8.19 16 14 O -0.56 -9.97 11.86 -13.84 -0.16 -10.13 16 15 C -0.17 -2.15 3.36 -27.88 -0.09 -2.24 16 16 C 0.15 1.90 0.79 -88.64 -0.07 1.83 16 17 O -0.56 -8.24 13.12 -54.63 -0.72 -8.96 16 18 C -0.15 -1.88 5.32 -25.07 -0.13 -2.01 16 19 C -0.12 -1.31 6.79 -25.61 -0.17 -1.48 16 20 C -0.12 -1.20 6.79 -25.61 -0.17 -1.38 16 21 C -0.11 -1.20 6.00 -25.09 -0.15 -1.35 16 22 C 0.10 1.70 6.37 -3.48 -0.02 1.67 16 23 C -0.12 -2.61 5.17 -26.39 -0.14 -2.75 16 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.38 7.00 -51.93 -0.36 1.01 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.16 7.93 -51.93 -0.41 0.75 16 31 H 0.10 1.21 7.65 -51.93 -0.40 0.81 16 32 H 0.39 5.83 6.34 45.56 0.29 6.12 16 33 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 34 H 0.08 1.20 7.07 -51.93 -0.37 0.83 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 0.97 5.93 -51.93 -0.31 0.66 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -27.60 335.28 -9.41 -37.01 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.90 Total: 6.90 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.78 Total: -11.43 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.11 Total: -33.94 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.88 Total: -19.09 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.60 -9.41 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334329753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.000 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds