Wall clock time and date at job start Tue Mar 31 2020 07:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.49099 * 2 1 4 4 O 1.21283 * 120.00185 * 101.36937 * 3 2 1 5 5 N 1.34773 * 120.00047 * 281.36944 * 3 2 1 6 6 C 1.46935 * 120.62957 * 5.44348 * 5 3 2 7 7 C 1.53620 * 108.54235 * 126.36742 * 6 5 3 8 8 C 1.53042 * 109.24046 * 54.85939 * 7 6 5 9 9 C 1.50706 * 109.45956 * 178.49158 * 8 7 6 10 10 H 1.08000 * 120.00409 * 120.07028 * 9 8 7 11 11 C 1.37878 * 119.99499 * 300.06211 * 9 8 7 12 12 N 1.31516 * 120.00260 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99868 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47063 * 59.99942 * 13 11 9 15 15 H 1.48498 * 109.47332 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46902 * 300.00432 * 13 11 9 17 17 C 1.53045 * 109.53809 * 298.50609 * 8 7 6 18 18 C 1.46923 * 120.63345 * 185.72267 * 5 3 2 19 19 C 1.53090 * 109.48095 * 120.02498 * 2 1 3 20 20 C 1.53174 * 109.16882 * 177.59115 * 19 2 1 21 21 C 1.53185 * 109.03488 * 303.02725 * 20 19 2 22 22 C 1.53089 * 109.16687 * 56.97208 * 21 20 19 23 23 O 1.42900 * 109.41448 * 302.39568 * 22 21 20 24 24 H 1.08993 * 109.47038 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47075 * 300.03065 * 1 2 3 26 26 H 1.08997 * 109.46879 * 60.02925 * 1 2 3 27 27 H 1.08993 * 109.58541 * 246.20123 * 6 5 3 28 28 H 1.08996 * 109.58523 * 6.62576 * 6 5 3 29 29 H 1.08991 * 109.63884 * 294.86766 * 7 6 5 30 30 H 1.08998 * 109.45710 * 174.73940 * 7 6 5 31 31 H 1.08998 * 109.45581 * 58.52160 * 8 7 6 32 32 H 0.97005 * 119.99721 * 179.97438 * 12 11 9 33 33 H 1.08995 * 109.50000 * 301.41741 * 17 8 7 34 34 H 1.09001 * 109.52713 * 181.33286 * 17 8 7 35 35 H 1.09001 * 109.58860 * 353.37260 * 18 5 3 36 36 H 1.09004 * 109.58966 * 113.79858 * 18 5 3 37 37 H 1.09000 * 109.52455 * 297.50256 * 19 2 1 38 38 H 1.09008 * 109.52211 * 57.62262 * 19 2 1 39 39 H 1.08994 * 109.55119 * 183.15489 * 20 19 2 40 40 H 1.09004 * 109.54192 * 62.88159 * 20 19 2 41 41 H 1.09001 * 109.51842 * 297.06712 * 21 20 19 42 42 H 1.09003 * 109.51942 * 176.88457 * 21 20 19 43 43 H 1.09004 * 109.47880 * 62.37937 * 22 21 20 44 44 H 1.09000 * 109.48301 * 182.41043 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0328 1.4206 0.0000 4 8 2.4304 1.9233 1.0297 5 7 2.0408 2.1327 -1.1443 6 6 1.4537 1.5813 -2.3732 7 6 0.4322 2.5891 -2.9215 8 6 1.1127 3.9476 -3.1051 9 6 0.1245 4.9308 -3.6779 10 1 -0.1224 5.8289 -3.1312 11 6 -0.4642 4.6838 -4.9000 12 7 -0.1637 3.5900 -5.5656 13 14 -1.6885 5.9028 -5.6103 14 1 -1.0276 7.2204 -5.7902 15 1 -2.1739 5.4085 -6.9238 16 1 -2.8378 6.0484 -4.6812 17 6 1.6122 4.4570 -1.7512 18 6 2.6420 3.4725 -1.1881 19 6 2.0405 -0.7222 1.2496 20 6 3.5711 -0.7709 1.2123 21 6 4.0176 -1.4600 -0.0808 22 6 3.4307 -0.7094 -1.2790 23 8 2.0066 -0.6742 -1.1663 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5143 0.8897 26 1 -0.3633 0.5134 -0.8902 27 1 2.2389 1.4149 -3.1105 28 1 0.9547 0.6386 -2.1487 29 1 -0.3963 2.6891 -2.2205 30 1 0.0556 2.2381 -3.8823 31 1 1.9564 3.8418 -3.7870 32 1 -0.5782 3.4162 -6.4252 33 1 0.7725 4.5393 -1.0611 34 1 2.0758 5.4353 -1.8784 35 1 2.9273 3.7782 -0.1815 36 1 3.5223 3.4572 -1.8308 37 1 1.7148 -0.1842 2.1399 38 1 1.6433 -1.7371 1.2716 39 1 3.9391 -1.3326 2.0708 40 1 3.9689 0.2436 1.2408 41 1 3.6613 -2.4902 -0.0863 42 1 5.1059 -1.4498 -0.1419 43 1 3.8193 0.3089 -1.2958 44 1 3.7100 -1.2204 -2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334771837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:21 Heat of formation + Delta-G solvation = -93.087975 kcal Electronic energy + Delta-G solvation = -24267.823055 eV Core-core repulsion = 20991.545159 eV Total energy + Delta-G solvation = -3276.277896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -40.92137 -38.16185 -36.76691 -33.94423 -33.18692 -32.94005 -31.08276 -29.96822 -27.78129 -26.35293 -24.43306 -23.78113 -22.38946 -22.11660 -21.01618 -19.47769 -18.06606 -17.34927 -16.25078 -16.16529 -15.64985 -14.98945 -14.69081 -14.51110 -14.23739 -14.12979 -13.72213 -13.14229 -12.92226 -12.79669 -12.61599 -12.51170 -12.25791 -12.08315 -11.86425 -11.75987 -11.54775 -11.15996 -11.03195 -10.91261 -10.79912 -10.65540 -10.53237 -10.36189 -10.05604 -9.78738 -9.60986 -9.15399 -9.08816 -8.71182 -8.35860 -7.95110 -6.01421 -4.07823 2.85809 3.30323 3.35145 3.38014 3.40907 3.75128 4.41754 4.58994 4.77925 4.80248 4.87398 4.93511 5.23086 5.28288 5.44764 5.51511 5.64074 5.66461 5.72483 5.78547 5.84028 5.86881 5.91258 5.97448 5.99290 6.05876 6.14294 6.16881 6.26430 6.31403 6.44679 6.52274 6.69776 6.88210 7.01879 7.13464 7.20020 7.32668 7.68298 7.93762 7.95742 8.06709 8.41850 8.52455 8.95226 9.57083 11.03839 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.004797 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.992161 B = 5836.050641 C = 6035.413421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.104 3.896 3 C 0.494 3.506 4 O -0.555 6.555 5 N -0.589 5.589 6 C 0.095 3.905 7 C -0.124 4.124 8 C 0.049 3.951 9 C -0.513 4.513 10 H 0.053 0.947 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.122 4.122 18 C 0.108 3.892 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.154 4.154 22 C 0.054 3.946 23 O -0.358 6.358 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.037 0.963 30 H 0.104 0.896 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -10.721 9.183 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.061 3.939 3 C 0.280 3.720 4 O -0.435 6.435 5 N -0.320 5.320 6 C -0.026 4.026 7 C -0.163 4.163 8 C 0.030 3.970 9 C -0.551 4.551 10 H 0.072 0.928 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.160 4.160 18 C -0.014 4.014 19 C -0.163 4.163 20 C -0.164 4.164 21 C -0.192 4.192 22 C -0.023 4.023 23 O -0.277 6.277 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.486 -10.618 9.381 15.194 hybrid contribution -0.477 0.811 -0.417 1.029 sum 5.009 -9.807 8.964 14.199 Atomic orbital electron populations 1.21912 0.90566 1.03654 1.03982 1.21691 0.96406 0.88493 0.87278 1.21086 0.78816 0.88505 0.83568 1.90617 1.49148 1.71941 1.31781 1.48309 1.56539 1.16843 1.10320 1.22472 0.97292 0.98441 0.84391 1.22114 0.96015 0.96391 1.01740 1.18633 0.95591 0.92525 0.90214 1.21169 1.24536 1.05901 1.03497 0.92835 1.24950 0.96711 0.95373 0.96847 1.69834 1.43653 1.25078 1.14430 0.86690 0.81658 0.81589 0.78243 1.20346 1.21301 1.20356 1.21988 0.97214 0.96985 0.99798 1.21722 0.96149 0.82282 1.01274 1.21926 0.96369 1.00549 0.97408 1.21654 0.95611 1.01930 0.97253 1.22192 1.00906 1.00335 0.95789 1.22656 0.81037 1.00131 0.98448 1.88021 1.21218 1.76785 1.41704 0.90733 0.90638 0.90266 0.92471 0.88809 0.94440 0.87827 0.95591 0.92933 0.93007 0.92290 0.90526 0.92333 0.90008 0.90710 0.91624 0.90659 0.91146 0.91092 0.92827 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.55 37.16 0.32 -1.59 16 2 C 0.10 1.50 0.67 -91.73 -0.06 1.44 16 3 C 0.49 8.64 4.70 -10.99 -0.05 8.59 16 4 O -0.56 -10.90 14.14 5.56 0.08 -10.82 16 5 N -0.59 -10.73 2.53 -172.50 -0.44 -11.17 16 6 C 0.10 1.77 4.82 -3.48 -0.02 1.76 16 7 C -0.12 -2.77 5.17 -26.39 -0.14 -2.91 16 8 C 0.05 1.17 2.06 -91.72 -0.19 0.98 16 9 C -0.51 -13.73 8.56 -34.44 -0.29 -14.03 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 11 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 12 N -0.89 -24.50 11.30 55.43 0.63 -23.88 16 13 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 18 C 0.11 2.01 6.44 -3.71 -0.02 1.98 16 19 C -0.12 -1.57 4.56 -26.59 -0.12 -1.69 16 20 C -0.13 -1.53 5.74 -26.55 -0.15 -1.68 16 21 C -0.15 -1.67 6.14 -26.59 -0.16 -1.83 16 22 C 0.05 0.68 6.20 37.20 0.23 0.91 16 23 O -0.36 -5.13 7.51 -35.23 -0.26 -5.39 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.16 6.32 -51.93 -0.33 0.83 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.62 3.63 -51.93 -0.19 1.43 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 2.58 6.03 -51.93 -0.31 2.27 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 38 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.09 6.48 -51.93 -0.34 0.75 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.77 6.75 -51.93 -0.35 0.42 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -28.66 326.49 -8.32 -36.98 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.32 Total: 2.64 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.90 Total: -9.16 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.19 Total: -35.05 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.19 Total: -16.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.66 -8.32 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334771837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.110 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds